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1VRL
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BU of 1vrl by Molmil
MutY adenine glycosylase in complex with DNA and soaked adenine free base
Descriptor: 5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3', 5'-D(*TP*GP*TP*CP*CP*AP*(HPD)P*GP*TP*CP*T)-3', ADENINE, ...
Authors:Fromme, J.C, Banerjee, A, Huang, S.J, Verdine, G.L.
Deposit date:2005-03-08
Release date:2005-03-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for removal of adenine mispaired with 8-oxoguanine by MutY adenine DNA glycosylase
Nature, 427, 2004
1R2Y
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BU of 1r2y by Molmil
MutM (Fpg) bound to 8-oxoguanine (oxoG) containing DNA
Descriptor: 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*CP*GP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', MutM, ...
Authors:Fromme, J.C, Verdine, G.L.
Deposit date:2003-09-30
Release date:2003-10-14
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:DNA Lesion Recognition by the Bacterial Repair Enzyme MutM.
J.Biol.Chem., 278, 2003
1R2Z
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BU of 1r2z by Molmil
MutM (Fpg) bound to 5,6-dihydrouracil (DHU) containing DNA
Descriptor: 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*CP*GP*TP*CP*CP*AP*(DHU)P*GP*TP*CP*TP*AP*CP*C)-3', MutM, ...
Authors:Fromme, J.C, Verdine, G.L.
Deposit date:2003-09-30
Release date:2003-10-14
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:DNA Lesion Recognition by the Bacterial Repair Enzyme MutM.
J.Biol.Chem., 278, 2003
1ORN
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BU of 1orn by Molmil
Structure of a Trapped Endonuclease III-DNA Covalent Intermediate: Estranged-Guanine Complex
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-D(*AP*AP*GP*AP*CP*GP*TP*GP*GP*AP*C)-3', 5'-D(*T*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*T)-3', ...
Authors:Fromme, J.C, Verdine, G.L.
Deposit date:2003-03-14
Release date:2003-07-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of a Trapped Endonuclease III-DNA Covalent Intermediate
Embo J., 22, 2003
1ORP
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BU of 1orp by Molmil
Structure of a Trapped Endonuclease III-DNA Covalent Intermediate: Estranged-Adenine Complex
Descriptor: 5'-D(*AP*AP*GP*AP*CP*AP*TP*GP*GP*AP*C)-3', 5'-D(*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*T)-3', Endonuclease III, ...
Authors:Fromme, J.C, Verdine, G.L.
Deposit date:2003-03-14
Release date:2003-07-15
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of a Trapped Endonuclease III-DNA Covalent Intermediate
Embo J., 22, 2003
1P59
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BU of 1p59 by Molmil
Structure of a non-covalent Endonuclease III-DNA Complex
Descriptor: 5'-D(*AP*AP*GP*AP*CP*GP*(5IU)P*GP*GP*AP*C)-3', 5'-D(TP*GP*(5IU)P*CP*CP*AP*(3DR)P*GP*(5IU)P*CP*T)-3', Endonuclease III, ...
Authors:Fromme, J.C, Verdine, G.L.
Deposit date:2003-04-25
Release date:2003-07-15
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of a Trapped Endonuclease III-DNA Covalent Intermediate
Embo J., 22, 2003
1RRQ
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BU of 1rrq by Molmil
MutY adenine glycosylase in complex with DNA containing an A:oxoG pair
Descriptor: 5'-D(*TP*GP*TP*CP*CP*AP*AP*GP*TP*CP*T)-3', 5'-D(AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3', CALCIUM ION, ...
Authors:Fromme, J.C, Banerjee, A, Huang, S.J, Verdine, G.L.
Deposit date:2003-12-08
Release date:2004-02-17
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Structural basis for removal of adenine mispaired with 8-oxoguanine by MutY adenine DNA glycosylase
Nature, 427, 2004
1RRS
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BU of 1rrs by Molmil
MutY adenine glycosylase in complex with DNA containing an abasic site
Descriptor: 5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3', 5'-D(*TP*GP*TP*CP*CP*AP*(HPD)P*GP*TP*CP*T)-3', CALCIUM ION, ...
Authors:Fromme, J.C, Banerjee, A, Huang, S.J, Verdine, G.L.
Deposit date:2003-12-08
Release date:2004-02-17
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for removal of adenine mispaired with 8-oxoguanine by MutY adenine DNA glycosylase
Nature, 427, 2004
1HU0
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BU of 1hu0 by Molmil
CRYSTAL STRUCTURE OF AN HOGG1-DNA BOROHYDRIDE TRAPPED INTERMEDIATE COMPLEX
Descriptor: 5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 8-OXOGUANINE, ...
Authors:Fromme, J.C, Bruner, S.D, Yang, W, Karplus, M, Verdine, G.L.
Deposit date:2001-01-03
Release date:2003-02-25
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Product-Assisted Catalysis in base-excision DNA Repair
Nat.Struct.Biol., 10, 2003
1L2D
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BU of 1l2d by Molmil
MutM (Fpg)-DNA Estranged Guanine Mismatch Recognition Complex
Descriptor: 5'-D(*AP*G*GP*TP*AP*GP*AP*CP*GP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*(HPD)P*GP*TP*CP*TP*AP*CP*C)-3', MutM, ...
Authors:Fromme, J.C, Verdine, G.L.
Deposit date:2002-02-20
Release date:2002-06-14
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural insights into lesion recognition and repair by the bacterial 8-oxoguanine DNA glycosylase MutM.
Nat.Struct.Biol., 9, 2002
1L1Z
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BU of 1l1z by Molmil
MutM (Fpg) Covalent-DNA Intermediate
Descriptor: 5'-D(*AP*G*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3', MutM, ...
Authors:Fromme, J.C, Verdine, G.L.
Deposit date:2002-02-20
Release date:2002-06-14
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural insights into lesion recognition and repair by the bacterial 8-oxoguanine DNA glycosylase MutM.
Nat.Struct.Biol., 9, 2002
1L2B
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BU of 1l2b by Molmil
MutM (Fpg) DNA End-Product Structure
Descriptor: 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*CP*GP*TP*CP*C*(AD2))-3', 5'-D(P*GP*TP*CP*TP*AP*CP*C)-3', ...
Authors:Fromme, J.C, Verdine, G.L.
Deposit date:2002-02-20
Release date:2002-06-14
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural insights into lesion recognition and repair by the bacterial 8-oxoguanine DNA glycosylase MutM.
Nat.Struct.Biol., 9, 2002
1L2C
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BU of 1l2c by Molmil
MutM (Fpg)-DNA Estranged Thymine Mismatch Recognition Complex
Descriptor: 5'-D(*AP*G*GP*TP*AP*GP*AP*CP*TP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*(HPD)P*GP*TP*CP*TP*AP*CP*C)-3', MutM, ...
Authors:Fromme, J.C, Verdine, G.L.
Deposit date:2002-02-20
Release date:2002-06-14
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural insights into lesion recognition and repair by the bacterial 8-oxoguanine DNA glycosylase MutM.
Nat.Struct.Biol., 9, 2002
1L1T
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BU of 1l1t by Molmil
MutM (Fpg) Bound to Abasic-Site Containing DNA
Descriptor: 5'-D(*AP*G*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*(HPD)P*GP*TP*CP*TP*AP*CP*C)-3', MutM, ...
Authors:Fromme, J.C, Verdine, G.L.
Deposit date:2002-02-19
Release date:2002-06-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insights into lesion recognition and repair by the bacterial 8-oxoguanine DNA glycosylase MutM.
Nat.Struct.Biol., 9, 2002
1LWW
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BU of 1lww by Molmil
Borohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-bromoguanine
Descriptor: 5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 8-BROMOGUANINE, ...
Authors:Fromme, J.C, Bruner, S.D, Yang, W, Karplus, M, Verdine, G.L.
Deposit date:2002-06-03
Release date:2003-02-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Product-Assisted Catalysis in Base Excision DNA Repair
Nat.Struct.Biol., 10, 2003
1LWV
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BU of 1lwv by Molmil
Borohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-aminoguanine
Descriptor: 5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 8-AMINOGUANINE, ...
Authors:Fromme, J.C, Bruner, S.D, Yang, W, Karplus, M, Verdine, G.L.
Deposit date:2002-06-03
Release date:2003-02-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Product-Assisted Catalysis in Base Excision DNA Repair
Nat.Struct.Biol., 10, 2003
1LWY
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BU of 1lwy by Molmil
hOgg1 Borohydride-Trapped Intermediate without 8-oxoguanine
Descriptor: 5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 8-OXOGUANINE DNA GLYCOSYLASE
Authors:Fromme, J.C, Bruner, S.D, Yang, W, Karplus, M, Verdine, G.L.
Deposit date:2002-06-03
Release date:2003-02-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Product-Assisted Catalysis in Base Excision DNA Repair
Nat.Struct.Biol., 10, 2003
8UCQ
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BU of 8ucq by Molmil
CryoEM structure of Sec7 autoinhibited conformation
Descriptor: SEC7 domain-containing protein
Authors:Brownfield, B.A, Fromme, J.C.
Deposit date:2023-09-27
Release date:2024-03-13
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Sec7 regulatory domains scaffold autoinhibited and active conformations.
Proc.Natl.Acad.Sci.USA, 121, 2024
7URO
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BU of 7uro by Molmil
Gea2-Arf1 activation intermediate complex (composite structure)
Descriptor: ARF1 isoform 1, GEA2 isoform 1
Authors:Muccini, A, Fromme, J.C.
Deposit date:2022-04-22
Release date:2022-08-24
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structural basis for activation of Arf1 at the Golgi complex
Cell Rep, 40, 2022
7UTH
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BU of 7uth by Molmil
Gea2 open/open conformation (composite structure)
Descriptor: GEA2 isoform 1
Authors:Muccini, A, Fromme, J.C.
Deposit date:2022-04-26
Release date:2022-08-24
Last modified:2022-09-14
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural basis for activation of Arf1 at the Golgi complex.
Cell Rep, 40, 2022
7URR
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BU of 7urr by Molmil
Gea2 closed/open conformation (composite structure)
Descriptor: GEA2 isoform 1
Authors:Muccini, A, Fromme, J.C.
Deposit date:2022-04-22
Release date:2022-08-24
Last modified:2022-09-14
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Structural basis for activation of Arf1 at the Golgi complex.
Cell Rep, 40, 2022
7UT4
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BU of 7ut4 by Molmil
Gea2 closed/closed conformation (composite structure)
Descriptor: GEA2 isoform 1
Authors:Muccini, A, Fromme, J.C.
Deposit date:2022-04-26
Release date:2022-08-24
Last modified:2022-09-14
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural basis for activation of Arf1 at the Golgi complex.
Cell Rep, 40, 2022
8CTP
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BU of 8ctp by Molmil
Crystal structure of engineered phospholipase D mutant superPLD 2-23
Descriptor: PHOSPHATE ION, Phospholipase D
Authors:Tei, R, Bagde, S.R, Fromme, J.C, Baskin, J.M.
Deposit date:2022-05-16
Release date:2023-04-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Activity-based directed evolution of a membrane editor in mammalian cells.
Nat.Chem., 15, 2023
8CTQ
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BU of 8ctq by Molmil
Crystal structure of engineered phospholipase D mutant superPLD 2-48
Descriptor: PHOSPHATE ION, Phospholipase D
Authors:Tei, R, Bagde, S.R, Fromme, J.C, Baskin, J.M.
Deposit date:2022-05-16
Release date:2023-04-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Activity-based directed evolution of a membrane editor in mammalian cells.
Nat.Chem., 15, 2023
8GIA
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BU of 8gia by Molmil
Crystal structure of SARS-CoV-2 (Covid-19) Nsp3 macrodomain in complex with TFMU-ADPr
Descriptor: Non-structural protein 3, [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl [(2R,3S,4R,5R)-3,4-dihydroxy-5-{[2-oxo-4-(trifluoromethyl)-2H-1-benzopyran-7-yl]oxy}oxolan-2-yl]methyl dihydrogen diphosphate
Authors:Wallace, S.D, Bagde, S.R, Fromme, J.C.
Deposit date:2023-03-13
Release date:2023-05-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:A Fluorescence Polarization Assay for Macrodomains Facilitates the Identification of Potent Inhibitors of the SARS-CoV-2 Macrodomain.
Acs Chem.Biol., 18, 2023

 

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