Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7B4T
DownloadVisualize
BU of 7b4t by Molmil
Broadly neutralizing DARPin bnD.1 in complex with the HIV-1 envelope variable loop 3 crown mimetic peptide V3-IF (BG505)
Descriptor: Broadly neutralizing DARPin bnD.1, HIV-1 envelope variable loop 3 crown mimetic peptide V3-IF (BG505), SULFATE ION
Authors:Friedrich, N, Stiegeler, E, Glogl, M, Lemmin, T, Hansen, S, Kadelka, C, Wu, Y, Ernst, P, Maliqi, L, Foulkes, C, Morin, M, Eroglu, M, Liechti, T, Ivan, B, Reinberg, T, Schaefer, J, Karakus, U, Ursprung, S, Mann, A, Rusert, P, Kouyos, R.D, Robinson, J.A, Gunthard, H.F, Pluckthun, A, Trkola, A.
Deposit date:2020-12-02
Release date:2021-11-24
Last modified:2022-06-15
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Distinct conformations of the HIV-1 V3 loop crown are targetable for broad neutralization.
Nat Commun, 12, 2021
7B4W
DownloadVisualize
BU of 7b4w by Molmil
Broadly neutralizing DARPin bnD.3 in complex with the HIV-1 envelope variable loop 3 crown mimetic peptide V3-IF (BG505)
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Broadly neutralizing DARPin bnD.3, ...
Authors:Friedrich, N, Stiegeler, E, Glogl, M, Lemmin, T, Hansen, S, Kadelka, C, Wu, Y, Ernst, P, Maliqi, L, Foulkes, C, Morin, M, Eroglu, M, Liechti, T, Ivan, B, Reinberg, T, Schaefer, J, Karakus, U, Ursprung, S, Mann, A, Rusert, P, Kouyos, R.D, Robinson, J.A, Gunthard, H.F, Pluckthun, A, Trkola, A.
Deposit date:2020-12-02
Release date:2021-11-24
Last modified:2022-06-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Distinct conformations of the HIV-1 V3 loop crown are targetable for broad neutralization.
Nat Commun, 12, 2021
7B4U
DownloadVisualize
BU of 7b4u by Molmil
Broadly neutralizing DARPin bnD.2 in complex with the HIV-1 envelope variable loop 3 crown mimetic peptide V3-IF (BG505)
Descriptor: Broadly neutralizing DARPin bnD.2, CALCIUM ION, HIV-1 envelope variable loop 3 crown mimetic peptide V3-IF (BG505)
Authors:Friedrich, N, Stiegeler, E, Glogl, M, Lemmin, T, Hansen, S, Kadelka, C, Wu, Y, Ernst, P, Maliqi, L, Foulkes, C, Morin, M, Eroglu, M, Liechti, T, Ivan, B, Reinberg, T, Schaefer, J, Karakus, U, Ursprung, S, Mann, A, Rusert, P, Kouyos, R.D, Robinson, J.A, Gunthard, H.F, Pluckthun, A, Trkola, A.
Deposit date:2020-12-02
Release date:2021-11-24
Last modified:2022-06-15
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Distinct conformations of the HIV-1 V3 loop crown are targetable for broad neutralization.
Nat Commun, 12, 2021
7B4V
DownloadVisualize
BU of 7b4v by Molmil
Broadly neutralizing DARPin bnD.2 in complex with the HIV-1 envelope variable loop 3 crown mimetic peptide V3-IF (BG505)
Descriptor: Broadly neutralizing DARPin bnD.2, CHLORIDE ION, HIV-1 envelope variable loop 3 crown mimetic peptide V3-IF (BG505), ...
Authors:Friedrich, N, Stiegeler, E, Glogl, M, Lemmin, T, Hansen, S, Kadelka, C, Wu, Y, Ernst, P, Maliqi, L, Foulkes, C, Morin, M, Eroglu, M, Liechti, T, Ivan, B, Reinberg, T, Schaefer, J, Karakus, U, Ursprung, S, Mann, A, Rusert, P, Kouyos, R.D, Robinson, J.A, Gunthard, H.F, Pluckthun, A, Trkola, A.
Deposit date:2020-12-02
Release date:2021-11-24
Last modified:2022-06-15
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Distinct conformations of the HIV-1 V3 loop crown are targetable for broad neutralization.
Nat Commun, 12, 2021
4A5V
DownloadVisualize
BU of 4a5v by Molmil
Solution structure ensemble of the two N-terminal apple domains (residues 58-231) of Toxoplasma gondii microneme protein 4
Descriptor: MICRONEMAL PROTEIN 4
Authors:Marchant, J, Cowper, B, Liu, Y, Lai, L, Pinzan, C, Marq, J.B, Friedrich, N, Sawmynaden, K, Chai, W, Childs, R.A, Saouros, S, Simpson, P, Barreira, M.C.R, Feizi, T, Soldati-Favre, D, Matthews, S.
Deposit date:2011-10-28
Release date:2012-04-04
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Galactose Recognition by the Apicomplexan Parasite Toxoplasma Gondii.
J.Biol.Chem., 287, 2012
2GFU
DownloadVisualize
BU of 2gfu by Molmil
NMR solution structure of the PWWP domain of Mismatch repair protein hMSH6
Descriptor: DNA mismatch repair protein MSH6
Authors:Laguri, C, Friedrich, N, Axt, M, Gilquin, B, Zinn-Justin, S, Couprie, J.
Deposit date:2006-03-23
Release date:2007-04-10
Last modified:2021-11-10
Method:SOLUTION NMR
Cite:The PWWP domain of Mismatch Repair protein hMSH6 is involved in double stranded and single stranded DNA binding
To be Published
2JHD
DownloadVisualize
BU of 2jhd by Molmil
Crystal structure of Toxoplasma gondii micronemal protein 1 bound to 3'-sialyl-N-acetyllactosamine
Descriptor: ACETATE ION, CHLORIDE ION, GLYCEROL, ...
Authors:Blumenschein, T.M.A, Friedrich, N, Childs, R.A, Saouros, S, Carpenter, E.P, Campanero-Rhodes, M.A, Simpson, P, Koutroukides, T, Blackman, M.J, Feizi, T, Soldati-Favre, D, Matthews, S.
Deposit date:2007-02-21
Release date:2007-05-22
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Atomic Resolution Insight Into Host Cell Recognition by Toxoplasma Gondii.
Embo J., 26, 2007
2JH7
DownloadVisualize
BU of 2jh7 by Molmil
Crystal structure of Toxoplasma gondii micronemal protein 1 bound to 6'-sialyl-N-acetyllactosamine
Descriptor: ACETATE ION, CHLORIDE ION, GLYCEROL, ...
Authors:Blumenschein, T.M.A, Friedrich, N, Childs, R.A, Saouros, S, Carpenter, E.P, Campanero-Rhodes, M.A, Simpson, P, Koutroukides, T, Blackman, M.J, Feizi, T, Soldati-Favre, D, Matthews, S.
Deposit date:2007-02-20
Release date:2007-05-22
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Atomic Resolution Insight Into Host Cell Recognition by Toxoplasma Gondii.
Embo J., 26, 2007
2JH1
DownloadVisualize
BU of 2jh1 by Molmil
Crystal structure of Toxoplasma gondii micronemal protein 1
Descriptor: ACETATE ION, CHLORIDE ION, GLYCEROL, ...
Authors:Blumenschein, T.M.A, Friedrich, N, Childs, R.A, Saouros, S, Carpenter, E.P, Campanero-Rhodes, M.A, Simpson, P, Koutroukides, T, Blackman, M.J, Feizi, T, Soldati-Favre, D, Matthews, S.
Deposit date:2007-02-19
Release date:2007-05-22
Last modified:2019-01-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Atomic Resolution Insight Into Host Cell Recognition by Toxoplasma Gondii.
Embo J., 26, 2007
7DNG
DownloadVisualize
BU of 7dng by Molmil
DARPin 63_B7 in complex with linear V3-crown (MN) peptide
Descriptor: DARPin 63_B7, linear V3-crown (MN) peptide
Authors:Wu, Y, Plueckthun, A.
Deposit date:2020-12-09
Release date:2021-12-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Distinct conformations of the HIV-1 V3 loop crown are targetable for broad neutralization.
Nat Commun, 12, 2021
7DNF
DownloadVisualize
BU of 7dnf by Molmil
DARPin 63_B7 in complex with V3-IY (MN) crown mimetic
Descriptor: DARPin 63_B7, SULFATE ION, V3-IY (MN) crown mimetic peptide
Authors:Wu, Y, Plueckthun, A.
Deposit date:2020-12-09
Release date:2021-12-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Distinct conformations of the HIV-1 V3 loop crown are targetable for broad neutralization.
Nat Commun, 12, 2021
7DNE
DownloadVisualize
BU of 7dne by Molmil
DARPin 5m3_D12 in complex with V3-IY (MN) crown mimetic
Descriptor: DARPin 5m3_D12, V3-IY (MN) crown mimetic peptide
Authors:Wu, Y, Plueckthun, A.
Deposit date:2020-12-09
Release date:2021-12-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Distinct conformations of the HIV-1 V3 loop crown are targetable for broad neutralization.
Nat Commun, 12, 2021
7Z7C
DownloadVisualize
BU of 7z7c by Molmil
Broadly neutralizing DARPin bnD.8 in complex with the HIV-1 envelope variable loop 3 peptide V3 (BF520)
Descriptor: 1,2-ETHANEDIOL, Broadly neutralizing DARPin bnD.8, Envelope glycoprotein gp160, ...
Authors:Mittl, P.R, Gloegl, M.
Deposit date:2022-03-15
Release date:2023-03-29
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Trapping the HIV-1 V3 loop in a helical conformation enables broad neutralization.
Nat.Struct.Mol.Biol., 30, 2023
7TXD
DownloadVisualize
BU of 7txd by Molmil
Cryo-EM structure of BG505 SOSIP HIV-1 Env trimer in complex with CD4 receptor (D1D2) and broadly neutralizing darpin bnD.9
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Broadly neutralizing darpin bnd.9, ...
Authors:Cerutti, G, Gorman, J, Kwong, P.D, Shapiro, L.
Deposit date:2022-02-08
Release date:2023-04-12
Last modified:2023-09-27
Method:ELECTRON MICROSCOPY (3.87 Å)
Cite:Trapping the HIV-1 V3 loop in a helical conformation enables broad neutralization.
Nat.Struct.Mol.Biol., 30, 2023
8AED
DownloadVisualize
BU of 8aed by Molmil
Broadly neutralizing DARPin bnD.9 in complex with the HIV-1 envelope variable loop 3 peptide V3 (BG505)
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Broadly neutralizing DARPin bnD.9, ...
Authors:Mittl, P, Gloegl, M.
Deposit date:2022-07-13
Release date:2023-08-16
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Trapping the HIV-1 V3 loop in a helical conformation enables broad neutralization.
Nat.Struct.Mol.Biol., 30, 2023
3F5E
DownloadVisualize
BU of 3f5e by Molmil
Crystal structure of Toxoplasma gondii micronemal protein 1 bound to 2'F-3'SiaLacNAc1-3
Descriptor: ACETATE ION, CHLORIDE ION, GLYCEROL, ...
Authors:Garnett, J.A, Liu, Y, Feizi, T, Matthews, S.J.
Deposit date:2008-11-03
Release date:2009-07-28
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Detailed insights from microarray and crystallographic studies into carbohydrate recognition by microneme protein 1 (MIC1) of Toxoplasma gondii.
Protein Sci., 18, 2009
3F5A
DownloadVisualize
BU of 3f5a by Molmil
Crystal structure of Toxoplasma gondii micronemal protein 1 bound to 3'SiaLacNAc1-3
Descriptor: ACETATE ION, CHLORIDE ION, GLYCEROL, ...
Authors:Garnett, J.A, Liu, Y, Feizi, T, Matthews, S.J.
Deposit date:2008-11-03
Release date:2009-07-28
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Detailed insights from microarray and crystallographic studies into carbohydrate recognition by microneme protein 1 (MIC1) of Toxoplasma gondii.
Protein Sci., 18, 2009
3F53
DownloadVisualize
BU of 3f53 by Molmil
Crystal structure of Toxoplasma gondii micronemal protein 1 bound to 2F-3'SiaLacNAc
Descriptor: ACETATE ION, CHLORIDE ION, GLYCEROL, ...
Authors:Garnett, J.A.
Deposit date:2008-11-03
Release date:2009-07-28
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Detailed insights from microarray and crystallographic studies into carbohydrate recognition by microneme protein 1 (MIC1) of Toxoplasma gondii.
Protein Sci., 18, 2009
7AEJ
DownloadVisualize
BU of 7aej by Molmil
Crystal structure of asymmetric HIV-1 gp41 containing all membrane anchors
Descriptor: 2H10, Envelope glycoprotein gp160,Envelope glycoprotein gp160
Authors:Caillat, C, Guilligay, D, Weissenhorn, W.
Deposit date:2020-09-17
Release date:2021-05-26
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Structure of HIV-1 gp41 with its membrane anchors targeted by neutralizing antibodies.
Elife, 10, 2021
2K2S
DownloadVisualize
BU of 2k2s by Molmil
structure of the MIC1-GLD/MIC6-EGF complex from Toxoplasma gondii
Descriptor: Micronemal protein 1, Micronemal protein 6
Authors:Matthews, S.
Deposit date:2008-04-11
Release date:2009-02-24
Last modified:2011-07-27
Method:SOLUTION NMR
Cite:Structural insights into microneme protein assembly reveal a new mode of EGF domain recognition
Embo Rep., 9, 2008
2K2T
DownloadVisualize
BU of 2k2t by Molmil
Epidermal growth Factor-like domain 2 from Toxoplasma gondii Microneme protein 6
Descriptor: Micronemal protein 6
Authors:Sawmynaden, K, Saouros, S, Marchant, J, Simpson, P, Matthews, S.
Deposit date:2008-04-11
Release date:2009-02-24
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Structural insights into microneme protein assembly reveal a new mode of EGF domain recognition.
Embo Rep., 9, 2008
2LL4
DownloadVisualize
BU of 2ll4 by Molmil
HADDOCK structure of TgMIC4-A5/lacto-N-biose complex, based on NOE-derived distance restraints
Descriptor: Micronemal protein 4, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Cowper, B, Matthews, S.
Deposit date:2011-10-26
Release date:2012-04-04
Last modified:2020-07-29
Method:SOLUTION NMR
Cite:Galactose Recognition by the Apicomplexan Parasite Toxoplasma gondii.
J.Biol.Chem., 287, 2012
2LL3
DownloadVisualize
BU of 2ll3 by Molmil
The solution structure of TgMIC4 apple-5 domain
Descriptor: Micronemal protein 4
Authors:Cowper, B, Matthews, S.
Deposit date:2011-10-26
Release date:2012-04-04
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Galactose Recognition by the Apicomplexan Parasite Toxoplasma gondii.
J.Biol.Chem., 287, 2012

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon