Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8T9R
DownloadVisualize
BU of 8t9r by Molmil
T4 highly immunogenic outer capsid protein C-terminal domain bound to a vertex-proximal gp23* capsomer of the prolate capsid in two preferred orientations.
Descriptor: Highly immunogenic outer capsid protein, Mature major capsid protein
Authors:Fokine, A, Rao, V.B.
Deposit date:2023-06-24
Release date:2023-07-19
Last modified:2023-08-09
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure and Function of Hoc-A Novel Environment Sensing Device Encoded by T4 and Other Bacteriophages.
Viruses, 15, 2023
8T1X
DownloadVisualize
BU of 8t1x by Molmil
T4 highly immunogenic outer capsid protein C-terminal domain bound to the vertex-proximal gp23* capsomer of the isometric head in two preferred orientations
Descriptor: Highly immunogenic outer capsid protein, Mature major capsid protein gp23*
Authors:Fokine, A, Rao, V.B.
Deposit date:2023-06-04
Release date:2023-07-19
Last modified:2023-08-09
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure and Function of Hoc-A Novel Environment Sensing Device Encoded by T4 and Other Bacteriophages.
Viruses, 15, 2023
1YUE
DownloadVisualize
BU of 1yue by Molmil
Bacteriophage T4 capsid vertex protein gp24
Descriptor: Head vertex protein Gp24
Authors:Fokine, A, Leiman, P.G, Shneider, M.M, Ahvazi, B, Boeshans, K.M, Steven, A.C, Black, L.W, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2005-02-14
Release date:2005-04-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural and functional similarities between the capsid proteins of bacteriophages T4 and HK97 point to a common ancestry.
Proc.Natl.Acad.Sci.Usa, 102, 2005
3SHS
DownloadVisualize
BU of 3shs by Molmil
Three N-terminal domains of the bacteriophage RB49 Highly Immunogenic Outer Capsid protein (Hoc)
Descriptor: Hoc head outer capsid protein, MAGNESIUM ION
Authors:Fokine, A, Islam, M.Z, Zhang, Z, Bowman, V.D, Rao, V.B, Rossmann, M.G.
Deposit date:2011-06-16
Release date:2011-06-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.951 Å)
Cite:Structure of the three N-terminal immunoglobulin domains of the highly immunogenic outer capsid protein from a T4-like bacteriophage.
J.Virol., 85, 2011
5JBL
DownloadVisualize
BU of 5jbl by Molmil
Structure of the bacteriophage T4 capsid assembly protease, gp21.
Descriptor: Prohead core protein protease
Authors:Fokine, A, Rossmann, M.G.
Deposit date:2016-04-13
Release date:2016-12-07
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.943 Å)
Cite:Common Evolutionary Origin of Procapsid Proteases, Phage Tail Tubes, and Tubes of Bacterial Type VI Secretion Systems.
Structure, 24, 2016
3J2M
DownloadVisualize
BU of 3j2m by Molmil
The X-ray structure of the gp15 hexamer and the model of the gp18 protein fitted into the cryo-EM reconstruction of the extended T4 tail
Descriptor: Tail connector protein Gp15, Tail sheath protein Gp18
Authors:Fokine, A, Zhang, Z, Kanamaru, S, Bowman, V.D, Aksyuk, A, Arisaka, F, Rao, V.B, Rossmann, M.G.
Deposit date:2012-11-09
Release date:2013-03-06
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (15 Å)
Cite:The molecular architecture of the bacteriophage t4 neck.
J.Mol.Biol., 425, 2013
3J2N
DownloadVisualize
BU of 3j2n by Molmil
The X-ray structure of the gp15 hexamer and the model of the gp18 protein fitted into the cryo-EM reconstruction of the contracted T4 tail
Descriptor: Tail connector protein Gp15, Tail sheath protein Gp18
Authors:Fokine, A, Zhang, Z, Kanamaru, S, Bowman, V.D, Aksyuk, A, Arisaka, F, Rao, V.B, Rossmann, M.G.
Deposit date:2012-11-10
Release date:2013-03-06
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (16 Å)
Cite:The molecular architecture of the bacteriophage t4 neck.
J.Mol.Biol., 425, 2013
4HUD
DownloadVisualize
BU of 4hud by Molmil
Structure of the bacteriophage T4 tail terminator protein, gp15.
Descriptor: Tail connector protein Gp15
Authors:Fokine, A, Zhang, Z, Kanamaru, S, Bowman, V.D, Aksyuk, A, Arisaka, F, Rao, V.B, Rossmann, M.G.
Deposit date:2012-11-02
Release date:2013-02-27
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.7001 Å)
Cite:The molecular architecture of the bacteriophage t4 neck.
J.Mol.Biol., 425, 2013
4HUH
DownloadVisualize
BU of 4huh by Molmil
Structure of the bacteriophage T4 tail terminator protein, gp15 (C-terminal truncation mutant 1-261).
Descriptor: Tail connector protein Gp15
Authors:Fokine, A, Zhang, Z, Kanamaru, S, Bowman, V.D, Aksyuk, A, Arisaka, F, Rao, V.B, Rossmann, M.G.
Deposit date:2012-11-02
Release date:2013-02-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The molecular architecture of the bacteriophage t4 neck.
J.Mol.Biol., 425, 2013
3BKV
DownloadVisualize
BU of 3bkv by Molmil
X-ray structure of the bacteriophage phiKZ lytic transglycosylase, gp144, in complex with chitotetraose, (NAG)4
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, NICKEL (II) ION, SULFATE ION, ...
Authors:Fokine, A, Miroshnikov, K.A, Shneider, M.M, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2007-12-07
Release date:2008-01-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of the bacteriophage phi KZ lytic transglycosylase gp144.
J.Biol.Chem., 283, 2008
3BKH
DownloadVisualize
BU of 3bkh by Molmil
Crystal structure of the bacteriophage phiKZ lytic transglycosylase, gp144
Descriptor: NICKEL (II) ION, SULFATE ION, lytic transglycosylase
Authors:Fokine, A, Miroshnikov, K.A, Shneider, M.M, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2007-12-06
Release date:2008-01-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of the bacteriophage phi KZ lytic transglycosylase gp144.
J.Biol.Chem., 283, 2008
3J2O
DownloadVisualize
BU of 3j2o by Molmil
Model of the bacteriophage T4 fibritin based on the cryo-EM reconstruction of the contracted T4 tail containing the phage collar and whiskers
Descriptor: Fibritin
Authors:Fokine, A, Zhang, Z, Kanamaru, S, Bowman, V.D, Aksyuk, A.A, Arisaka, F, Rao, V.B, Rossmann, M.G.
Deposit date:2012-11-12
Release date:2013-03-06
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (25 Å)
Cite:The molecular architecture of the bacteriophage t4 neck.
J.Mol.Biol., 425, 2013
8GMO
DownloadVisualize
BU of 8gmo by Molmil
Bacteriophage T4 capsid shell containing 9DE insertions into the gp23* major capsid protein subunits
Descriptor: Mature capsid vertex protein, Mature major capsid protein
Authors:Fokine, A, Rao, V.B.
Deposit date:2023-03-26
Release date:2023-05-10
Last modified:2023-06-14
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Design of bacteriophage T4-based artificial viral vectors for human genome remodeling.
Nat Commun, 14, 2023
4WM7
DownloadVisualize
BU of 4wm7 by Molmil
Crystal Structure of Human Enterovirus D68 in Complex with Pleconaril
Descriptor: 3-{3,5-DIMETHYL-4-[3-(3-METHYL-ISOXAZOL-5-YL)-PROPOXY]-PHENYL}-5-TRIFLUOROMETHYL-[1,2,4]OXADIAZOLE, VP1, VP2, ...
Authors:Liu, Y, Sheng, J, Fokine, A, Meng, G, Long, F, Kuhn, R.J, Rossmann, M.G.
Deposit date:2014-10-08
Release date:2015-01-14
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Virus structure. Structure and inhibition of EV-D68, a virus that causes respiratory illness in children.
Science, 347, 2015
6UZC
DownloadVisualize
BU of 6uzc by Molmil
Portal vertex structure of bacteriophage T4
Descriptor: Major capsid protein, Portal protein
Authors:Fang, Q, Fokine, A, Rao, V.B.
Deposit date:2019-11-14
Release date:2020-04-29
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Structural morphing in a symmetry-mismatched viral vertex.
Nat Commun, 11, 2020
4WM8
DownloadVisualize
BU of 4wm8 by Molmil
Crystal Structure of Human Enterovirus D68
Descriptor: DECANOIC ACID, VP1, VP2, ...
Authors:Liu, Y, Sheng, J, Fokine, A, Meng, G, Long, F, Kuhn, R.J, Rossmann, M.G.
Deposit date:2014-10-08
Release date:2015-01-14
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Virus structure. Structure and inhibition of EV-D68, a virus that causes respiratory illness in children.
Science, 347, 2015
3SPE
DownloadVisualize
BU of 3spe by Molmil
Crystal structure of the tail sheath protein protease resistant fragment from bacteriophage phiKZ
Descriptor: GLYCEROL, PHIKZ029, PHOSPHATE ION
Authors:Aksyuk, A.A, Kurochkina, L.P, Fokine, A, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2011-07-01
Release date:2011-12-14
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.3996 Å)
Cite:Structural conservation of the myoviridae phage tail sheath protein fold.
Structure, 19, 2011
5UHY
DownloadVisualize
BU of 5uhy by Molmil
A Human Antibody Against Zika Virus Crosslinks the E Protein to Prevent Infection
Descriptor: ZV67 Fab chain 1, ZV67 Fab chain 2, envelope protein
Authors:Hasan, S.S, Miller, A, Sapparapu, G, Fernandez, E, Klose, T, Long, F, Fokine, A, Porta, J.C, Jiang, W, Diamond, M.S, Crowe Jr, J.E, Kuhn, R.J, Rossmann, M.G.
Deposit date:2017-01-12
Release date:2017-03-29
Last modified:2019-11-27
Method:ELECTRON MICROSCOPY (6.2 Å)
Cite:A human antibody against Zika virus crosslinks the E protein to prevent infection.
Nat Commun, 8, 2017
5HX2
DownloadVisualize
BU of 5hx2 by Molmil
In vitro assembled star-shaped hubless T4 baseplate
Descriptor: Baseplate wedge protein gp10, Baseplate wedge protein gp53, Baseplate wedge protein gp6, ...
Authors:Yap, M.L, Klose, T, Fokine, A, Rossmann, M.G.
Deposit date:2016-01-29
Release date:2016-03-02
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Role of bacteriophage T4 baseplate in regulating assembly and infection.
Proc.Natl.Acad.Sci.USA, 113, 2016
7VRT
DownloadVisualize
BU of 7vrt by Molmil
The unexpanded head structure of phage T4
Descriptor: Capsid vertex protein, Major capsid protein
Authors:Fang, Q, Tang, W, Fokine, A, Mahalingam, M, Shao, Q, Rossmann, M.G, Rao, V.B.
Deposit date:2021-10-24
Release date:2022-10-05
Method:ELECTRON MICROSCOPY (5.1 Å)
Cite:Structures of a large prolate virus capsid in unexpanded and expanded states generate insights into the icosahedral virus assembly.
Proc.Natl.Acad.Sci.USA, 119, 2022
7VS5
DownloadVisualize
BU of 7vs5 by Molmil
The expanded head structure of phage T4
Descriptor: Capsid vertex protein, Major capsid protein, Small outer capsid protein
Authors:Fang, Q, Tang, W, Fokine, A, Mahalingam, M, Shao, Q, Rossmann, M.G, Rao, V.B.
Deposit date:2021-10-25
Release date:2022-10-05
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structures of a large prolate virus capsid in unexpanded and expanded states generate insights into the icosahedral virus assembly.
Proc.Natl.Acad.Sci.USA, 119, 2022
5VF3
DownloadVisualize
BU of 5vf3 by Molmil
Bacteriophage T4 isometric capsid
Descriptor: Capsid vertex protein gp24, Highly immunogenic outer capsid protein, Major capsid protein, ...
Authors:Chen, Z, Sun, L, Zhang, Z, Fokine, A, Padilla-Sanchez, V, Hanein, D, Jiang, W, Rossmann, M.G, Rao, V.B.
Deposit date:2017-04-06
Release date:2017-09-13
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-EM structure of the bacteriophage T4 isometric head at 3.3- angstrom resolution and its relevance to the assembly of icosahedral viruses.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
3IG9
DownloadVisualize
BU of 3ig9 by Molmil
Small outer capsid protein (SOC) of bacteriophage RB69
Descriptor: IMIDAZOLE, Soc small outer capsid protein
Authors:Li, Q, Fokine, A, O'Donnell, E, Rao, V.B, Rossmann, M.G.
Deposit date:2009-07-27
Release date:2009-12-08
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the Small Outer Capsid Protein, Soc: A Clamp for Stabilizing Capsids of T4-like Phages
J.Mol.Biol., 395, 2010
3J0H
DownloadVisualize
BU of 3j0h by Molmil
Fitting of the bacteriophage phiKZ gp29PR structure into the cryo-EM density map of the phiKZ extended tail sheath
Descriptor: PHIKZ029
Authors:Aksyuk, A.A, Fokine, A, Kurochkina, L.P, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2011-08-16
Release date:2011-12-14
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (18 Å)
Cite:Structural conservation of the myoviridae phage tail sheath protein fold.
Structure, 19, 2011
3IGE
DownloadVisualize
BU of 3ige by Molmil
Small outer capsid protein (Soc) from bacteriophage RB69
Descriptor: IMIDAZOLE, Soc small outer capsid protein
Authors:Li, Q, Fokine, A, O'Donnell, E, Rao, V.B, Rossmann, M.G.
Deposit date:2009-07-27
Release date:2009-12-08
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.254 Å)
Cite:Structure of the Small Outer Capsid Protein, Soc: A Clamp for Stabilizing Capsids of T4-like Phages
J.Mol.Biol., 395, 2010

 

12>

218500

PDB entries from 2024-04-17

PDB statisticsPDBj update infoContact PDBjnumon