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7LKJ
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BU of 7lkj by Molmil
Crystal structure of Helicobacter pylori aminofutalosine deaminase (AFLDA)
Descriptor: 1,2-ETHANEDIOL, Aminofutalosine deaminase, FE (III) ION
Authors:Harijan, R.K, Feng, M, Bonanno, J.B, Almo, S.C, Schramm, V.L.
Deposit date:2021-02-02
Release date:2021-06-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Aminofutalosine Deaminase in the Menaquinone Pathway of Helicobacter pylori .
Biochemistry, 60, 2021
7LKK
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BU of 7lkk by Molmil
Crystal structure of Helicobacter pylori aminofutalosine deaminase (AFLDA) in complex with Methylthio-coformycin
Descriptor: (8R)-3-(5-S-methyl-5-thio-beta-D-ribofuranosyl)-3,6,7,8-tetrahydroimidazo[4,5-d][1,3]diazepin-8-ol, 1,2-ETHANEDIOL, Aminofutalosine deaminase, ...
Authors:Harijan, R.K, Feng, M, Bonanno, J.B, Almo, S.C, Schramm, V.L.
Deposit date:2021-02-02
Release date:2021-06-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Aminofutalosine Deaminase in the Menaquinone Pathway of Helicobacter pylori .
Biochemistry, 60, 2021
4NZW
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BU of 4nzw by Molmil
Crystal Structure of STK25-MO25 Complex
Descriptor: 5-[(E)-(5-CHLORO-2-OXO-1,2-DIHYDRO-3H-INDOL-3-YLIDENE)METHYL]-N-[2-(DIETHYLAMINO)ETHYL]-2,4-DIMETHYL-1H-PYRROLE-3-CARBOXAMIDE, Calcium-binding protein 39, Serine/threonine-protein kinase 25
Authors:Feng, M, Hao, Q, Zhou, Z.C.
Deposit date:2013-12-13
Release date:2014-12-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.583 Å)
Cite:Structural insights into regulatory mechanisms of MO25-mediated kinase activation.
J.Struct.Biol., 186, 2014
4O27
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BU of 4o27 by Molmil
Crystal structure of MST3-MO25 complex with WIF motif
Descriptor: 5-mer peptide from serine/threonine-protein kinase 24, ADENOSINE-5'-DIPHOSPHATE, Calcium-binding protein 39, ...
Authors:Hao, Q, Feng, M, Zhou, Z.C.
Deposit date:2013-12-16
Release date:2014-12-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.185 Å)
Cite:Structural insights into regulatory mechanisms of MO25-mediated kinase activation.
J.Struct.Biol., 186, 2014
5HNK
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BU of 5hnk by Molmil
Crystal structure of T5Fen in complex intact substrate and metal ions.
Descriptor: DNA (5'-D(*AP*AP*AP*AP*GP*CP*GP*TP*AP*CP*GP*C)-3'), Exodeoxyribonuclease, GLYCEROL, ...
Authors:Almalki, F.A, Feng, M, Zhang, J, Sedelnikova, S.E, Rafferty, J.B, Sayers, J.R, Artymiuk, P.J.
Deposit date:2016-01-18
Release date:2016-06-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Direct observation of DNA threading in flap endonuclease complexes.
Nat.Struct.Mol.Biol., 23, 2016
5HML
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BU of 5hml by Molmil
Crystal Structure of T5 D15 Protein Co-crystallized with Metal Ions
Descriptor: 1,2-ETHANEDIOL, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, ...
Authors:Flemming, C.S, Feng, M, Sedelnikova, S.E, Zhang, J, Rafferty, J.B, Sayers, J.R, Artymiuk, P.J.
Deposit date:2016-01-16
Release date:2016-06-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.482 Å)
Cite:Direct observation of DNA threading in flap endonuclease complexes.
Nat.Struct.Mol.Biol., 23, 2016
1UT5
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BU of 1ut5 by Molmil
Divalent metal ions (manganese) bound to T5 5'-exonuclease
Descriptor: EXODEOXYRIBONUCLEASE, MANGANESE (II) ION
Authors:Ceska, T.A, Sayers, J.R, Suck, D.
Deposit date:2003-12-04
Release date:2004-02-05
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Roles of Divalent Metal Ions in Flap Endonuclease-Substrate Interactions
Nat.Struct.Mol.Biol., 11, 2004
1UT8
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BU of 1ut8 by Molmil
Divalent metal ions (zinc) bound to T5 5'-exonuclease
Descriptor: EXODEOXYRIBONUCLEASE, ZINC ION
Authors:Ceska, T.A, Sayers, J.R, Suck, D.
Deposit date:2003-12-04
Release date:2004-02-05
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Roles of Divalent Metal Ions in Flap Endonuclease-Substrate Interactions
Nat.Struct.Mol.Biol., 11, 2004
3SJL
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BU of 3sjl by Molmil
Crystal Structure of the P107S-MauG/pre-Methylamine Dehydrogenase Complex
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, ...
Authors:Jensen, L.M.R, Wilmot, C.M.
Deposit date:2011-06-21
Release date:2012-05-02
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Proline 107 is a major determinant in maintaining the structure of the distal pocket and reactivity of the high-spin heme of MauG.
Biochemistry, 51, 2012
3SLE
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BU of 3sle by Molmil
Crystal Structure of the P107C-MauG/pre-Methylamine Dehydrogenase Complex
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:Yukl, E.T, Wilmot, C.M.
Deposit date:2011-06-24
Release date:2012-05-02
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Proline 107 is a major determinant in maintaining the structure of the distal pocket and reactivity of the high-spin heme of MauG.
Biochemistry, 51, 2012
3SVW
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BU of 3svw by Molmil
Crystal Structure of the P107V-MauG/pre-Methylamine Dehydrogenase Complex
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ACETATE ION, ...
Authors:Jensen, L.M.R, Wilmot, C.M.
Deposit date:2011-07-12
Release date:2012-05-02
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Proline 107 is a major determinant in maintaining the structure of the distal pocket and reactivity of the high-spin heme of MauG.
Biochemistry, 51, 2012
6S6B
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BU of 6s6b by Molmil
Type III-B Cmr-beta Cryo-EM structure of the Apo state
Descriptor: CRISPR-associated RAMP protein, Cmr4 family, Cmr6 family, ...
Authors:Sofos, N, Montoya, G, Stella, S.
Deposit date:2019-07-02
Release date:2020-07-08
Last modified:2020-09-16
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:Structures of the Cmr-beta Complex Reveal the Regulation of the Immunity Mechanism of Type III-B CRISPR-Cas.
Mol.Cell, 79, 2020
7CJF
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BU of 7cjf by Molmil
Crystal structure of SARS-CoV-2 RBD in complex with a neutralizing antibody Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, antibody heavy chain, ...
Authors:Guo, Y, Li, X, Zhang, G, Fu, D, Schweizer, L, Zhang, H, Rao, Z.
Deposit date:2020-07-10
Release date:2020-11-11
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.108 Å)
Cite:A SARS-CoV-2 neutralizing antibody with extensive Spike binding coverage and modified for optimal therapeutic outcomes.
Nat Commun, 12, 2021
4Y5R
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BU of 4y5r by Molmil
Crystal Structure of a T67A MauG/pre-Methylamine Dehydrogenase Complex
Descriptor: CALCIUM ION, HEME C, Methylamine dehydrogenase heavy chain, ...
Authors:Li, C, Wilmot, C.M.
Deposit date:2015-02-11
Release date:2015-06-17
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A T67A mutation in the proximal pocket of the high-spin heme of MauG stabilizes formation of a mixed-valent Fe(II)/Fe(III) state and enhances charge resonance stabilization of the bis-Fe(IV) state.
Biochim.Biophys.Acta, 1847, 2015
6S8B
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BU of 6s8b by Molmil
Cryo-EM structure of the Type III-B Cmr-beta bound to cognate target RNA and AMPPnP, state 1
Descriptor: CRISPR-associated RAMP protein, Cmr4 family, Cmr6 family, ...
Authors:Sofos, N, Montoya, G, Stella, S.
Deposit date:2019-07-09
Release date:2020-07-08
Last modified:2020-09-16
Method:ELECTRON MICROSCOPY (2.41 Å)
Cite:Structures of the Cmr-beta Complex Reveal the Regulation of the Immunity Mechanism of Type III-B CRISPR-Cas.
Mol.Cell, 79, 2020
6S91
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BU of 6s91 by Molmil
Cryo-EM structure of the Type III-B Cmr-beta bound to cognate target RNA and AMPPnP, state 2
Descriptor: CRISPR-associated RAMP protein, Cmr4 family, Cmr6 family, ...
Authors:Sofos, N, Montoya, G, Stella, S.
Deposit date:2019-07-11
Release date:2020-07-08
Last modified:2020-09-16
Method:ELECTRON MICROSCOPY (2.68 Å)
Cite:Structures of the Cmr-beta Complex Reveal the Regulation of the Immunity Mechanism of Type III-B CRISPR-Cas.
Mol.Cell, 79, 2020
6SIC
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BU of 6sic by Molmil
Cryo-EM structure of the Type III-B Cmr-beta bound to cognate target RNA
Descriptor: CRISPR-associated RAMP protein, Cmr1 family, Cmr4 family, ...
Authors:Sofos, N, Montoya, G, Stella, S.
Deposit date:2019-08-09
Release date:2020-07-08
Last modified:2020-09-16
Method:ELECTRON MICROSCOPY (3.52 Å)
Cite:Structures of the Cmr-beta Complex Reveal the Regulation of the Immunity Mechanism of Type III-B CRISPR-Cas.
Mol.Cell, 79, 2020
6S8E
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BU of 6s8e by Molmil
Cryo-EM structure of the type III-B Cmr-beta complex bound to non-cognate target RNA
Descriptor: CRISPR-associated RAMP protein, Cmr4 family, Cmr6 family, ...
Authors:Sofos, N, Montoya, G, Stella, S.
Deposit date:2019-07-09
Release date:2020-07-08
Last modified:2020-09-16
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structures of the Cmr-beta Complex Reveal the Regulation of the Immunity Mechanism of Type III-B CRISPR-Cas.
Mol.Cell, 79, 2020
6SH8
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BU of 6sh8 by Molmil
Cryo-EM structure of the Type III-B Cmr-beta bound to cognate target RNA and AMPPnP, state 2, in the presence of ssDNA
Descriptor: CRISPR-associated RAMP protein, Cmr4 family, Cmr6 family, ...
Authors:Sofos, N, Montoya, G, Stella, S.
Deposit date:2019-08-06
Release date:2020-07-08
Last modified:2020-09-16
Method:ELECTRON MICROSCOPY (3.14 Å)
Cite:Structures of the Cmr-beta Complex Reveal the Regulation of the Immunity Mechanism of Type III-B CRISPR-Cas.
Mol.Cell, 79, 2020
6SHB
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BU of 6shb by Molmil
Cryo-EM structure of the Type III-B Cmr-beta bound to cognate target RNA and AMPPnP, state 1, in the presence of ssDNA
Descriptor: CRISPR-associated RAMP protein, Cmr4 family, Cmr6 family, ...
Authors:Sofos, N, Montoya, G, Stella, S.
Deposit date:2019-08-06
Release date:2020-07-08
Last modified:2020-09-16
Method:ELECTRON MICROSCOPY (3.07 Å)
Cite:Structures of the Cmr-beta Complex Reveal the Regulation of the Immunity Mechanism of Type III-B CRISPR-Cas.
Mol.Cell, 79, 2020
6QZQ
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BU of 6qzq by Molmil
Crystal structure of Csx1 from Sulfolobus islandicus monoclinic form
Descriptor: CRISPR-associated (Cas) DxTHG family
Authors:Molina, R, Montoya, G, Sofos, N, Stella, S.
Deposit date:2019-03-12
Release date:2020-01-22
Last modified:2020-08-05
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structure of Csx1-cOA4complex reveals the basis of RNA decay in Type III-B CRISPR-Cas.
Nat Commun, 10, 2019
6QZT
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BU of 6qzt by Molmil
Crystal structure of Csx1 from Sulfolobus islandicus orthorhombic form
Descriptor: CRISPR-associated (Cas) DxTHG family
Authors:Molina, R, Montoya, G, Sofos, N, Stella, S.
Deposit date:2019-03-12
Release date:2019-10-02
Method:X-RAY DIFFRACTION (2.93 Å)
Cite:Structure of Csx1-cOA4complex reveals the basis of RNA decay in Type III-B CRISPR-Cas.
Nat Commun, 10, 2019
6R9R
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BU of 6r9r by Molmil
Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2
Descriptor: CRISPR-associated (Cas) DxTHG family, circular RNA (5'-R(P*AP*AP*AP*A)-3')
Authors:Molina, R, Montoya, G, Sofos, N, Stella, S.
Deposit date:2019-04-03
Release date:2019-10-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of Csx1-cOA4complex reveals the basis of RNA decay in Type III-B CRISPR-Cas.
Nat Commun, 10, 2019
6R7B
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BU of 6r7b by Molmil
Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1
Descriptor: CRISPR-associated (Cas) DxTHG family, RNA (5'-R(P*AP*AP*AP*A)-3')
Authors:Molina, R, Montoya, G, Sofos, N, Stella, S.
Deposit date:2019-03-28
Release date:2019-10-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.12 Å)
Cite:Structure of Csx1-cOA4complex reveals the basis of RNA decay in Type III-B CRISPR-Cas.
Nat Commun, 10, 2019
6XIG
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BU of 6xig by Molmil
X-ray crystal structure of MqnE from Pedobacter heparinus
Descriptor: Aminodeoxyfutalosine synthase, D(-)-TARTARIC ACID, IRON/SULFUR CLUSTER
Authors:Grove, T.L, Bonanno, J.B, Almo, S.C.
Deposit date:2020-06-19
Release date:2020-07-15
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Narrow-Spectrum Antibiotic Targeting of the Radical SAM Enzyme MqnE in Menaquinone Biosynthesis.
Biochemistry, 59, 2020

 

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