Author results

1AN7
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RIBOSOMAL PROTEIN S8 FROM THERMUS THERMOPHILUS
Descriptor:RIBOSOMAL PROTEIN S8
Authors:Nevskaya, N., Nikonov, S., Al-Karadaghi, S.
Deposit date:1997-06-27
Release date:1998-07-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of ribosomal protein S8 from Thermus thermophilus reveals a high degree of structural conservation of a specific RNA binding site.
J.Mol.Biol., 279, 1998
1DK1
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DETAILED VIEW OF A KEY ELEMENT OF THE RIBOSOME ASSEMBLY: CRYSTAL STRUCTURE OF THE S15-RRNA COMPLEX
Descriptor:RRNA FRAGMENT, 30S RIBOSOMAL PROTEIN S15, MAGNESIUM ION, ...
Authors:Nikulin, A., Serganov, A., Ennifar, E., Tischenko, S., Nevskaya, N.
Deposit date:1999-12-06
Release date:2000-04-02
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of the S15-rRNA complex.
Nat.Struct.Biol., 7, 2000
1EG0
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FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME
Descriptor:FRAGMENT OF 16S RRNA HELIX 23, FRAGMENT OF 23S RRNA, HELIX 95 OF 23S RRNA, ...
Authors:Gabashvili, I.S., Agrawal, R.K., Spahn, C.M.T., Grassucci, R.A., Svergun, D.I., Frank, J., Penczek, P.
Deposit date:2000-02-11
Release date:2000-03-06
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (11.5 Å)
Cite:Solution structure of the E. coli 70S ribosome at 11.5 A resolution.
Cell(Cambridge,Mass.), 100, 2000
1EVK
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CRYSTAL STRUCTURE OF A TRUNCATED FORM OF THREONYL-TRNA SYNTHETASE WITH THE LIGAND THREONINE
Descriptor:THREONYL-TRNA SYNTHETASE, ZINC ION, THREONINE
Authors:Sankaranarayanan, R., Dock-Bregeon, A.C., Rees, B., Moras, D.
Deposit date:2000-04-20
Release date:2000-07-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Zinc ion mediated amino acid discrimination by threonyl-tRNA synthetase.
Nat.Struct.Biol., 7, 2000
1EVL
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CRYSTAL STRUCTURE OF A TRUNCATED FORM OF THREONYL-TRNA SYNTHETASE WITH A THREONYL ADENYLATE ANALOG
Descriptor:THREONYL-TRNA SYNTHETASE, ZINC ION, 5'-O-(N-(L-THREONYL)-SULFAMOYL)ADENOSINE
Authors:Sankaranarayanan, R., Dock-Bregeon, A.C., Rees, B., Moras, D.
Deposit date:2000-04-20
Release date:2000-07-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Zinc ion mediated amino acid discrimination by threonyl-tRNA synthetase.
Nat.Struct.Biol., 7, 2000
1F7Y
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THE CRYSTAL STRUCTURE OF TWO UUCG LOOPS HIGHLIGHTS THE ROLE PLAYED BY 2'-HYDROXYL GROUPS IN ITS UNUSUAL STABILITY
Descriptor:16S RIBOSOMAL RNA FRAGMENT, 30S RIBOSOMAL PROTEIN S15, MAGNESIUM ION, ...
Authors:Ennifar, E., Nikouline, A., Serganov, A., Tishchenko, S., Nevskaya, N., Garber, M., Ehresmann, B., Ehresmann, C., Nikonov, S., Dumas, P.
Deposit date:2000-06-28
Release date:2000-11-22
Last modified:2011-12-28
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The crystal structure of UUCG tetraloop.
J.Mol.Biol., 304, 2000
1FIR
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CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTION PRIMER TRNA(LYS3)
Descriptor:HIV-1 REVERSE TRANSCRIPTION PRIMER TRNA(LYS3), MAGNESIUM ION, SODIUM ION
Authors:Benas, P., Dumas, P.
Deposit date:2000-08-06
Release date:2001-01-17
Last modified:2018-04-11
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:The crystal structure of HIV reverse-transcription primer tRNA(Lys,3) shows a canonical anticodon loop.
RNA, 6, 2000
1FKA
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STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION
Descriptor:16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S2, 30S RIBOSOMAL PROTEIN S3, ...
Authors:Schluenzen, F., Tocilj, A., Zarivach, R., Harms, J., Gluehmann, M., Janell, D., Bashan, A., Bartels, H., Agmon, I., Franceschi, F., Yonath, A.
Deposit date:2000-08-09
Release date:2000-09-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution.
Cell(Cambridge,Mass.), 102, 2000
1FYF
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CRYSTAL STRUCTURE OF A TRUNCATED FORM OF THREONYL-TRNA SYNTHETASE COMPLEXED WITH A SERYL ADENYLATE ANALOG
Descriptor:THREONYL-TRNA SYNTHETASE, ZINC ION, 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE
Authors:Sankaranarayanan, R., Dock-Bregeon, A.C., Moras, D.
Deposit date:2000-09-29
Release date:2000-12-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Transfer RNA-mediated editing in threonyl-tRNA synthetase. The class II solution to the double discrimination problem.
Cell(Cambridge,Mass.), 103, 2000
1I6U
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RNA-PROTEIN INTERACTIONS: THE CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN S8/RRNA COMPLEX FROM METHANOCOCCUS JANNASCHII
Descriptor:16S RRNA FRAGMENT, 30S RIBOSOMAL PROTEIN S8P, SULFATE ION
Authors:Tishchenko, S., Nikulin, A., Fomenkova, N., Nevskaya, N., Nikonov, O., Dumas, P., Moine, H., Ehresmann, B., Ehresmann, C., Piendl, W., Lamzin, V., Garber, M., Nikonov, S.
Deposit date:2001-03-05
Release date:2001-08-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Detailed analysis of RNA-protein interactions within the ribosomal protein S8-rRNA complex from the archaeon Methanococcus jannaschii.
J.Mol.Biol., 311, 2001
1K9W
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HIV-1(MAL) RNA DIMERIZATION INITIATION SITE
Descriptor:HIV-1 DIS(Mal)UU RNA, MAGNESIUM ION
Authors:Ennifar, E., Walter, P., Ehresmann, B., Ehresmann, C., Dumas, P.
Deposit date:2001-10-31
Release date:2001-11-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structures of coaxially stacked kissing complexes of the HIV-1 RNA dimerization initiation site.
Nat.Struct.Biol., 8, 2001
1KOG
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CRYSTAL STRUCTURE OF E. COLI THREONYL-TRNA SYNTHETASE INTERACTING WITH THE ESSENTIAL DOMAIN OF ITS MRNA OPERATOR
Descriptor:Threonyl-tRNA synthetase mRNA, Threonyl-tRNA synthetase, ZINC ION, ...
Authors:Torres-Larrios, A., Dock-Bregeon, A.C., Romby, P., Rees, B., Sankaranarayanan, R., Caillet, J., Springer, M., Ehresmann, C., Ehresmann, B., Moras, D.
Deposit date:2001-12-20
Release date:2002-04-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural basis of translational control by Escherichia coli threonyl tRNA synthetase.
Nat.Struct.Biol., 9, 2002
1KUQ
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CRYSTAL STRUCTURE OF T3C MUTANT S15 RIBOSOMAL PROTEIN IN COMPLEX WITH 16S RRNA
Descriptor:16S RIBOSOMAL RNA FRAGMENT, 30S RIBOSOMAL PROTEIN S15, SULFATE ION
Authors:Nikulin, A.D., Tishchenko, S., Revtovich, S., Ehresmann, B., Ehresmann, C., Dumas, P., Garber, M., Nikonov, S., Nevskaya, N.
Deposit date:2002-01-22
Release date:2003-06-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Role of N-terminal helix in interaction of ribosomal protein S15 with 16S rRNA.
Biochemistry Mosc., 69, 2004
1MNX
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THE SOLUTION STRUCTURE OF THE LOOP E REGION OF THE 5S RRNA FROM SPINACH CHLOROPLASTS.
Descriptor:Loop E from 5S rRNA
Authors:Vallurupalli, P., Moore, P.B.
Deposit date:2002-09-06
Release date:2003-01-14
Last modified:2016-05-25
Method:SOLUTION NMR
Cite:The Solution Structure of the Loop E Region of the 5S rRNA from Spinach Chloroplasts
J.Mol.Biol., 325, 2003
1QD7
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PARTIAL MODEL FOR 30S RIBOSOMAL SUBUNIT
Descriptor:CENTRAL FRAGMENT OF 16 S RNA, END FRAGMENT OF 16 S RNA, S4 RIBOSOMAL PROTEIN, ...
Authors:Clemons Jr., W.M., May, J.L.C., Wimberly, B.T., McCutcheon, J.P., Capel, M.S., Ramakrishnan, V.
Deposit date:1999-07-09
Release date:1999-08-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (5.5 Å)
Cite:Structure of a bacterial 30S ribosomal subunit at 5.5 A resolution.
Nature, 400, 1999
1QF6
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STRUCTURE OF E. COLI THREONYL-TRNA SYNTHETASE COMPLEXED WITH ITS COGNATE TRNA
Descriptor:THREONINE TRNA, THREONYL-TRNA SYNTHETASE, ZINC ION, ...
Authors:Sankaranarayanan, R., Dock-Bregeon, A.C., Rees, B., Moras, D.
Deposit date:1999-04-06
Release date:1999-05-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The structure of threonyl-tRNA synthetase-tRNA(Thr) complex enlightens its repressor activity and reveals an essential zinc ion in the active site
Cell(Cambridge,Mass.), 97, 1999
1Y90
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HIV-1 DIS(MAL) DUPLEX MN-SOAKED
Descriptor:5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3', MANGANESE (II) ION
Authors:Ennifar, E., Walter, P., Dumas, P.
Deposit date:2004-12-14
Release date:2004-12-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.08 Å)
Cite:A crystallographic study of the binding of 13 metal ions to two related RNA duplexes
Nucleic Acids Res., 31, 2003
1Y99
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HIV-1 SUBTYPE A DIS RNA DUPLEX
Descriptor:5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3', MAGNESIUM ION
Authors:Ennifar, E., Yusupov, M., Walter, P., Marquet, R., Ehresmann, B., Ehresmann, C., Dumas, P.
Deposit date:2004-12-15
Release date:2004-12-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The crystal structure of the dimerization initiation site of genomic HIV-1 RNA reveals an extended duplex with two adenine bulges
Structure Fold.Des., 7, 1999
2B8R
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STRUCTURE OF HIV-1(LAI) GENOMIC RNA DIS
Descriptor:5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3', MAGNESIUM ION, SULFATE ION, ...
Authors:Ennifar, E., Walter, P., Ehresmann, B., Ehresmann, C., Dumas, P.
Deposit date:2005-10-10
Release date:2005-10-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structures of coaxially stacked kissing complexes of the HIV-1 RNA dimerization initiation site
Nat.Struct.Biol., 8, 2001
2B8S
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STRUCTURE OF HIV-1(MAL) GENOMIC RNA DIS
Descriptor:5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3', MAGNESIUM ION, SULFATE ION, ...
Authors:Ennifar, E., Walter, P., Ehresmann, B., Ehresmann, C., Dumas, P.
Deposit date:2005-10-10
Release date:2005-10-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Crystal structures of coaxially stacked kissing complexes of the HIV-1 RNA dimerization initiation site
NAT.STRUCT.BIOL., 8, 2001
2VAZ
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MODEL OF THE S15-MRNA COMPLEX FITTED INTO THE CRYO-EM MAP OF THE 70S ENTRAPMENT COMPLEX.
Descriptor:RPSO MRNA OPERATOR, 30S RIBOSOMAL PROTEIN S15
Authors:Marzi, S., Myasnikov, A.G., Serganov, A., Ehresmann, C., Romby, P., Yusupov, M., Klaholz, B.P.
Deposit date:2007-09-05
Release date:2007-10-02
Last modified:2017-08-02
Method:ELECTRON MICROSCOPY (10 Å)
Cite:Structured Mrnas Regulate Translation Initiation by Binding to the Platform of the Ribosome.
Cell(Cambridge,Mass.), 130, 2007
462D
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CRYSTAL STRUCTURE OF THE HIV-1 GENOMIC RNA DIMERIZATION INITIATION SITE
Descriptor:RNA (5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G) -3'), MAGNESIUM ION
Authors:Ennifar, E., Yusupov, M., Walter, P., Marquet, R., Ehresmann, C., Ehresmann, B., Dumas, P.
Deposit date:1999-03-18
Release date:1999-12-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The crystal structure of the dimerization initiation site of genomic HIV-1 RNA reveals an extended duplex with two adenine bulges.
Structure Fold.Des., 7, 1999
4V4P
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CRYSTAL STRUCTURE OF 70S RIBOSOME WITH THRS OPERATOR AND TRNAS.
Descriptor:5S ribosomal RNA, 23S ribosomal RNA, 50S ribosomal protein L1, ...
Authors:Jenner, L., Romby, P., Rees, B., Schulze-Briese, C., Springer, M., Ehresmann, C., Ehresmann, B., Moras, D., Yusupova, G., Yusupov, M.
Deposit date:2005-01-19
Release date:2014-07-09
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (5.5 Å)
Cite:Translational operator of mRNA on the ribosome: how repressor proteins exclude ribosome binding.
Science, 308, 2005