Author results

5XON
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RNA POLYMERASE II ELONGATION COMPLEX BOUND WITH SPT4/5 AND TFIIS
Descriptor:DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, ...
Authors:Ehara, H., Yokoyama, T., Shigematsu, H., Shirouzu, M., Sekine, S.
Deposit date:2017-05-29
Release date:2017-08-16
Last modified:2017-09-13
Method:ELECTRON MICROSCOPY (3.83 Å)
Cite:Structure of the complete elongation complex of RNA polymerase II with basal factors
Science, 357, 2017
6IR9
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RNA POLYMERASE II ELONGATION COMPLEX BOUND WITH ELF1 AND SPT4/5, STALLED AT SHL(-1) OF THE NUCLEOSOME
Descriptor:DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, ...
Authors:Ehara, H., Kujirai, T., Fujino, Y., Shirouzu, M., Kurumizaka, H., Sekine, S.
Deposit date:2018-11-12
Release date:2019-02-20
Last modified:2019-02-27
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural insight into nucleosome transcription by RNA polymerase II with elongation factors.
Science, 363, 2019
6J4W
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RNA POLYMERASE II ELONGATION COMPLEX BOUND WITH ELF1 AND SPT4/5, STALLED AT SHL(-5) OF THE NUCLEOSOME
Descriptor:DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, ...
Authors:Ehara, H., Kujirai, T., Fujino, Y., Shirouzu, M., Kurumizaka, H., Sekine, S.
Deposit date:2019-01-10
Release date:2019-02-20
Last modified:2019-02-27
Method:ELECTRON MICROSCOPY (7.9 Å)
Cite:Structural insight into nucleosome transcription by RNA polymerase II with elongation factors.
Science, 363, 2019
6J4X
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RNA POLYMERASE II ELONGATION COMPLEX BOUND WITH ELF1 AND SPT4/5, STALLED AT SHL(-1) OF THE NUCLEOSOME (+1A)
Descriptor:DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, ...
Authors:Ehara, H., Kujirai, T., Fujino, Y., Shirouzu, M., Kurumizaka, H., Sekine, S.
Deposit date:2019-01-10
Release date:2019-02-20
Last modified:2019-02-27
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structural insight into nucleosome transcription by RNA polymerase II with elongation factors.
Science, 363, 2019
6J4Y
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RNA POLYMERASE II ELONGATION COMPLEX BOUND WITH ELF1 AND SPT4/5, STALLED AT SHL(-1) OF THE NUCLEOSOME (+1B)
Descriptor:DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, ...
Authors:Ehara, H., Kujirai, T., Fujino, Y., Shirouzu, M., Kurumizaka, H., Sekine, S.
Deposit date:2019-01-10
Release date:2019-02-20
Last modified:2019-02-27
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structural insight into nucleosome transcription by RNA polymerase II with elongation factors.
Science, 363, 2019
6J4Z
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RNA POLYMERASE II ELONGATION COMPLEX BOUND WITH SPT4/5 AND FOREIGN DNA, STALLED AT SHL(-1) OF THE NUCLEOSOME
Descriptor:DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, ...
Authors:Ehara, H., Kujirai, T., Fujino, Y., Shirouzu, M., Kurumizaka, H., Sekine, S.
Deposit date:2019-01-10
Release date:2019-02-20
Last modified:2019-02-27
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural insight into nucleosome transcription by RNA polymerase II with elongation factors.
Science, 363, 2019
6J50
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RNA POLYMERASE II ELONGATION COMPLEX BOUND WITH SPT4/5 AND FOREIGN DNA, STALLED AT SHL(-1) OF THE NUCLEOSOME (TILTED CONFORMATION)
Descriptor:DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, ...
Authors:Ehara, H., Kujirai, T., Fujino, Y., Shirouzu, M., Kurumizaka, H., Sekine, S.
Deposit date:2019-01-10
Release date:2019-02-20
Last modified:2019-02-27
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Structural insight into nucleosome transcription by RNA polymerase II with elongation factors.
Science, 363, 2019
6J51
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RNA POLYMERASE II ELONGATION COMPLEX BOUND WITH SPT4/5 AND FOREIGN DNA, STALLED AT SHL(-1) OF THE NUCLEOSOME, WEAK ELF1 (+1 POSITION)
Descriptor:DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, ...
Authors:Ehara, H., Kujirai, T., Fujino, Y., Shirouzu, M., Kurumizaka, H., Sekine, S.
Deposit date:2019-01-10
Release date:2019-02-20
Last modified:2019-02-27
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structural insight into nucleosome transcription by RNA polymerase II with elongation factors.
Science, 363, 2019
5XOG
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RNA POLYMERASE II ELONGATION COMPLEX BOUND WITH SPT5 KOW5 AND ELF1
Descriptor:DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, ...
Authors:Ehara, H., Shirouzu, M., Sekine, S.
Deposit date:2017-05-28
Release date:2017-08-16
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of the complete elongation complex of RNA polymerase II with basal factors
Science, 357, 2017
3AYH
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CRYSTAL STRUCTURE OF THE C17/25 SUBCOMPLEX FROM S. POMBE RNA POLYMERASE III
Descriptor:DNA-directed RNA polymerase III subunit rpc9, DNA-directed RNA polymerase III subunit rpc8, SULFATE ION
Authors:Ehara, H., Sekine, S., Yokoyama, S.
Deposit date:2011-05-06
Release date:2011-07-13
Last modified:2013-06-19
Method:X-RAY DIFFRACTION (2.193 Å)
Cite:Crystal structure of the C17/25 subcomplex from Schizosaccharomyces pombe RNA polymerase III
Protein Sci., 20, 2011
4WRI
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CRYSTAL STRUCTURE OF OKADAIC ACID BINDING PROTEIN 2.1
Descriptor:Okadaic acid binding protein 2-alpha, OKADAIC ACID
Authors:Ehara, H., Makino, M., Kodama, K., Ito, T., Sekine, S., Fukuzawa, S., Yokoyama, S., Tachibana, K.
Deposit date:2014-10-24
Release date:2015-05-27
Last modified:2015-07-15
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal Structure of Okadaic Acid Binding Protein 2.1: A Sponge Protein Implicated in Cytotoxin Accumulation
Chembiochem, 16, 2015
5X4Z
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RNA POLYMERASE II FROM KOMAGATAELLA PASTORIS (TYPE-1 CRYSTAL)
Descriptor:DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, ...
Authors:Ehara, H., Umehara, T., Sekine, S., Yokoyama, S.
Deposit date:2017-02-14
Release date:2017-05-17
Method:X-RAY DIFFRACTION (7.8 Å)
Cite:Crystal structure of RNA polymerase II from Komagataella pastoris
Biochem. Biophys. Res. Commun., 487, 2017
5X50
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RNA POLYMERASE II FROM KOMAGATAELLA PASTORIS (TYPE-2 CRYSTAL)
Descriptor:DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, ...
Authors:Ehara, H., Umehara, T., Sekine, S., Yokoyama, S.
Deposit date:2017-02-14
Release date:2017-05-17
Method:X-RAY DIFFRACTION (4.293 Å)
Cite:Crystal structure of RNA polymerase II from Komagataella pastoris
Biochem. Biophys. Res. Commun., 487, 2017
5X51
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RNA POLYMERASE II FROM KOMAGATAELLA PASTORIS (TYPE-3 CRYSTAL)
Descriptor:DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, ...
Authors:Ehara, H., Umehara, T., Sekine, S., Yokoyama, S.
Deposit date:2017-02-14
Release date:2017-05-17
Method:X-RAY DIFFRACTION (6.996 Å)
Cite:Crystal structure of RNA polymerase II from Komagataella pastoris
Biochem. Biophys. Res. Commun., 487, 2017
6A5L
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RNA POLYMERASE II ELONGATION COMPLEX STALLED AT SHL(-1) OF THE NUCLEOSOME, WITH FOREIGN DNA
Descriptor:DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, ...
Authors:Kujirai, T., Ehara, H., Fujino, Y., Shirouzu, M., Sekine, S., Kurumizaka, H.
Deposit date:2018-06-24
Release date:2018-10-03
Last modified:2018-11-14
Method:ELECTRON MICROSCOPY (5.6 Å)
Cite:Structural basis of the nucleosome transition during RNA polymerase II passage.
Science, 362, 2018
6A5O
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RNA POLYMERASE II ELONGATION COMPLEX STALLED AT SHL(-6) OF THE NUCLEOSOME
Descriptor:DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, ...
Authors:Kujirai, T., Ehara, H., Fujino, Y., Shirouzu, M., Sekine, S., Kurumizaka, H.
Deposit date:2018-06-25
Release date:2018-10-03
Last modified:2018-11-14
Method:ELECTRON MICROSCOPY (9.9 Å)
Cite:Structural basis of the nucleosome transition during RNA polymerase II passage.
Science, 362, 2018
6A5P
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RNA POLYMERASE II ELONGATION COMPLEX STALLED AT SHL(-5) OF THE NUCLEOSOME
Descriptor:DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, ...
Authors:Kujirai, T., Ehara, H., Fujino, Y., Shirouzu, M., Sekine, S., Kurumizaka, H.
Deposit date:2018-06-25
Release date:2018-10-03
Last modified:2018-11-14
Method:ELECTRON MICROSCOPY (7 Å)
Cite:Structural basis of the nucleosome transition during RNA polymerase II passage.
Science, 362, 2018
6A5R
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RNA POLYMERASE II ELONGATION COMPLEX STALLED AT SHL(-2) OF THE NUCLEOSOME
Descriptor:DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, ...
Authors:Kujirai, T., Ehara, H., Fujino, Y., Shirouzu, M., Sekine, S., Kurumizaka, H.
Deposit date:2018-06-25
Release date:2018-10-03
Last modified:2018-11-14
Method:ELECTRON MICROSCOPY (8.7 Å)
Cite:Structural basis of the nucleosome transition during RNA polymerase II passage.
Science, 362, 2018
6A5T
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RNA POLYMERASE II ELONGATION COMPLEX STALLED AT SHL(-1) OF THE NUCLEOSOME
Descriptor:DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, ...
Authors:Kujirai, T., Ehara, H., Fujino, Y., Shirouzu, M., Sekine, S., Kurumizaka, H.
Deposit date:2018-06-25
Release date:2018-10-03
Last modified:2018-11-14
Method:ELECTRON MICROSCOPY (6.7 Å)
Cite:Structural basis of the nucleosome transition during RNA polymerase II passage.
Science, 362, 2018
6A5U
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RNA POLYMERASE II ELONGATION COMPLEX STALLED AT SHL(-1) OF THE NUCLEOSOME, WITH FOREIGN DNA, TILT CONFORMATION
Descriptor:DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, ...
Authors:Kujirai, T., Ehara, H., Fujino, Y., Shirouzu, M., Sekine, S., Kurumizaka, H.
Deposit date:2018-06-25
Release date:2018-10-03
Last modified:2018-11-14
Method:ELECTRON MICROSCOPY (7.6 Å)
Cite:Structural basis of the nucleosome transition during RNA polymerase II passage.
Science, 362, 2018
6INQ
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RNA POLYMERASE II ELONGATION COMPLEX STALLED AT SHL(-1) OF THE NUCLEOSOME, WITH FOREIGN DNA (+1 POSITION)
Descriptor:DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, ...
Authors:Kujirai, T., Ehara, H., Fujino, Y., Shirouzu, M., Sekine, S., Kurumizaka, H.
Deposit date:2018-10-26
Release date:2019-04-03
Method:ELECTRON MICROSCOPY (6.9 Å)
Cite:Structural basis of the nucleosome transition during RNA polymerase II passage.
Science, 362, 2018
5B0U
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CRYSTAL STRUCTURE OF THE MUTATED 19 KDA PROTEIN OF OPLOPHORUS LUCIFERASE (NANOKAZ)
Descriptor:Oplophorus-luciferin 2-monooxygenase catalytic subunit
Authors:Tomabechi, Y., Ehara, H., Sekine, S.I., Shirouzu, M.
Deposit date:2015-11-04
Release date:2016-01-13
Last modified:2016-02-10
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Crystal structure of nanoKAZ: The mutated 19 kDa component of Oplophorus luciferase catalyzing the bioluminescent reaction with coelenterazine
Biochem.Biophys.Res.Commun., 470, 2016
5GV0
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CRYSTAL STRUCTURE OF THE MEMBRANE-PROXIMAL DOMAIN OF MOUSE LYSOSOME-ASSOCIATED MEMBRANE PROTEIN 1 (LAMP-1)
Descriptor:Lysosome-associated membrane glycoprotein 1, SULFATE ION, N-ACETYL-D-GLUCOSAMINE
Authors:Tomabechi, Y., Ehara, H., Kukimoto-Niino, M., Shirouzu, M.
Deposit date:2016-09-01
Release date:2016-10-12
Last modified:2016-10-19
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Lysosome-associated membrane proteins-1 and -2 (LAMP-1 and LAMP-2) assemble via distinct modes
Biochem.Biophys.Res.Commun., 479, 2016
5GV3
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CRYSTAL STRUCTURE OF THE MEMBRANE-DISTAL DOMAIN OF MOUSE LYSOSOME-ASSOCIATED MEMBRANE PROTEIN 2 (LAMP-2)
Descriptor:Lysosome-associated membrane glycoprotein 2, ZINC ION, N-ACETYL-D-GLUCOSAMINE
Authors:Tomabechi, Y., Ehara, H., Kukimoto-Niino, M., Shirouzu, M.
Deposit date:2016-09-01
Release date:2017-09-06
Last modified:2019-03-20
Method:X-RAY DIFFRACTION (2.096 Å)
Cite:Lysosome-associated membrane proteins-1 and -2 (LAMP-1 and LAMP-2) assemble via distinct modes.
Biochem. Biophys. Res. Commun., 479, 2016