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203D
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THE SOLUTION STRUCTURES OF PSORALEN MONOADDUCTED AND CROSSLINKED DNA OLIGOMERS BY NMR SPECTROSCOPY AND RESTRAINED MOLECULAR DYNAMICS
Descriptor:DNA (5'-D(*GP*CP*GP*TP*AP*CP*GP*C)-3'), 4'-HYDROXYMETHYL-4,5',8-TRIMETHYLPSORALEN
Authors:Spielmann, H.P., Dwyer, T.J., Hearst, J.E., Wemmer, D.E.
Deposit date:1995-04-06
Release date:1995-09-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structures of psoralen monoadducted and cross-linked DNA oligomers by NMR spectroscopy and restrained molecular dynamics.
Biochemistry, 34, 1995
204D
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THE SOLUTION STRUCTURES OF PSORALEN MONOADDUCTED AND CROSSLINKED DNA OLIGOMERS BY NMR SPECTROSCOPY AND RESTRAINED MOLECULAR DYNAMICS
Descriptor:DNA (5'-D(*GP*CP*GP*TP*AP*CP*GP*C)-3'), 4'-HYDROXYMETHYL-4,5',8-TRIMETHYLPSORALEN
Authors:Spielmann, H.P., Dwyer, T.J., Hearst, J.E., Wemmer, D.E.
Deposit date:1995-04-06
Release date:1995-09-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structures of psoralen monoadducted and cross-linked DNA oligomers by NMR spectroscopy and restrained molecular dynamics.
Biochemistry, 34, 1995
1PQQ
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NMR STRUCTURE OF A CYCLIC POLYAMIDE-DNA COMPLEX
Descriptor:5'-D(*CP*GP*CP*TP*AP*AP*CP*AP*GP*GP*C)-3', 5'-D(*GP*CP*CP*TP*GP*TP*TP*AP*GP*CP*G)-3', 45-(3-AMINOPROPYL)-5,11,22,28,34-PENTAMETHYL-3,9,15,20,26,32,38,43-OCTAOXO-2,5,8,14,19,22,25,28,31,34,37,42,45,48-TETRADECAAZA-11-AZONIAHEPTACYCLO[42.2.1.1~4,7~.1~10,13~.1~21,24~.1~27,30~.1~33,36~]DOPENTACONTA-1(46),4(52),6,10(51),12,21(50),23,27(49),29,33(48),35,44(47)-DODECAENE
Authors:Zhang, Q., Dwyer, T.J., Tsui, V., Case, D.A., Cho, J., Dervan, P.B., Wemmer, D.E.
Deposit date:2003-06-18
Release date:2004-06-29
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR Structure of a Cyclic Polyamide-DNA Complex.
J.Am.Chem.Soc., 126, 2004
2LHO
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SOLUTION STRUCTURE OF A DNA DUPLEX CONTAINING AN UNNATURAL, HYDROPHOBIC BASE PAIR
Descriptor:DNA (5'-D(*CP*GP*TP*TP*TP*CP*(LHO)P*TP*TP*CP*TP*C)-3'), DNA (5'-D(*GP*AP*GP*AP*AP*(MM7)P*GP*AP*AP*AP*CP*G)-3')
Authors:Malyshev, D.A., Pfaff, D.A., Ippoliti, S.L., Hwang, G.T., Dwyer, T.J., Romesberg, F.E.
Deposit date:2011-08-12
Release date:2012-07-04
Method:SOLUTION NMR
Cite:Solution structure, mechanism of replication, and optimization of an unnatural base pair.
Chemistry, 16, 2010
2PIS
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EFFORTS TOWARD EXPANSION OF THE GENETIC ALPHABET: STRUCTURE AND REPLICATION OF UNNATURAL BASE PAIRS
Descriptor:DNA (5'-D(*CP*GP*(CBR)P*GP*AP*AP*(FFD)P*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION
Authors:Matsuda, S., Fillo, J.D., Henry, A.A., Wilkins, S.J., Rai, P., Dwyer, T.J., Geierstanger, B.H., Wemmer, D.E., Schultz, P.G., Spraggon, G., Romesberg, F.E.
Deposit date:2007-04-13
Release date:2007-10-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Efforts toward expansion of the genetic alphabet: structure and replication of unnatural base pairs.
J.Am.Chem.Soc., 129, 2007
3RTV
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CRYSTAL STRUCTURE OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS IN A CLOSED TERNARY COMPLEX WITH NATURAL PRIMER/TEMPLATE DNA
Descriptor:DNA polymerase I, thermostable, (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DDG))-3'), ...
Authors:Marx, A., Diederichs, K., Betz, K.
Deposit date:2011-05-04
Release date:2012-05-30
Last modified:2012-09-12
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:KlenTaq polymerase replicates unnatural base pairs by inducing a Watson-Crick geometry.
Nat.Chem.Biol., 8, 2012
3SV3
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CRYSTAL STRUCTURE OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS IN A CLOSED TERNARY COMPLEX WITH THE ARTIFICIAL BASE PAIR DNAM-D5SICSTP
Descriptor:DNA polymerase I, thermostable, (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3'), ...
Authors:Betz, K., Diederichs, K., Marx, A.
Deposit date:2011-07-12
Release date:2012-06-06
Last modified:2012-09-12
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:KlenTaq polymerase replicates unnatural base pairs by inducing a Watson-Crick geometry.
Nat.Chem.Biol., 8, 2012
3SV4
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CRYSTAL STRUCTURE OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS IN AN OPEN BINARY COMPLEX WITH DT AS TEMPLATING NUCLEOBASE
Descriptor:DNA polymerase I, thermostable, (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3'), ...
Authors:Betz, K., Diederichs, K., Marx, A.
Deposit date:2011-07-12
Release date:2012-06-06
Last modified:2012-09-12
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:KlenTaq polymerase replicates unnatural base pairs by inducing a Watson-Crick geometry.
Nat.Chem.Biol., 8, 2012
3SYZ
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CRYSTAL STRUCTURE OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS IN AN OPEN BINARY COMPLEX WITH DNAM AS TEMPLATING NUCLEOBASE
Descriptor:DNA polymerase I, thermostable, (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3'), ...
Authors:Betz, K., Diederichs, K., Marx, A.
Deposit date:2011-07-18
Release date:2012-06-06
Last modified:2012-09-12
Method:X-RAY DIFFRACTION (1.952 Å)
Cite:KlenTaq polymerase replicates unnatural base pairs by inducing a Watson-Crick geometry.
Nat.Chem.Biol., 8, 2012
3SZ2
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CRYSTAL STRUCTURE OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS IN AN OPEN BINARY COMPLEX WITH DG AS TEMPLATING NUCLEOBASE
Descriptor:DNA polymerase I, thermostable, (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DDG))-3'), ...
Authors:Betz, K., Marx, A., Diederichs, K.
Deposit date:2011-07-18
Release date:2012-06-06
Last modified:2012-09-12
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:KlenTaq polymerase replicates unnatural base pairs by inducing a Watson-Crick geometry.
Nat.Chem.Biol., 8, 2012
1G80
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NMR SOLUTION STRUCTURE OF D(GCGTACGC)2
Descriptor:5'-D(*GP*CP*GP*TP*AP*CP*GP*C)-3'
Authors:Isaacs, R.J., Spielmann, H.P.
Deposit date:2000-11-15
Release date:2001-03-28
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Relationship of DNA structure to internal dynamics: correlation of helical parameters from NOE-based NMR solution structures of d(GCGTACGC)(2) and d(CGCTAGCG)(2) with (13)C order parameters implies conformational coupling in dinucleotide units.
J.Mol.Biol., 307, 2001