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1G2I
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BU of 1g2i by Molmil
CRYSTAL STRUCTURE OF A NOVEL INTRACELLULAR PROTEASE FROM PYROCOCCUS HORIKOSHII AT 2 A RESOLUTION
Descriptor: PROTEASE I, SULFATE ION
Authors:Du, X, Choi, I.-G, Kim, R, Jancarik, J, Kim, S.-H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2000-10-19
Release date:2000-11-08
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of an intracellular protease from Pyrococcus horikoshii at 2-A resolution.
Proc.Natl.Acad.Sci.USA, 97, 2000
1ILW
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BU of 1ilw by Molmil
Crystal Structure of Pyrazinamidase/Nicotinamidase of Pyrococcus horikoshii
Descriptor: 180 aa long hypothetical Pyrazinamidase/nicotinamidase
Authors:Du, X, Kim, S.-H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2001-05-08
Release date:2001-12-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure and mechanism of catalysis of a pyrazinamidase from Pyrococcus horikoshii.
Biochemistry, 40, 2001
1IM5
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BU of 1im5 by Molmil
Crystal Structure of Pyrazinamidase of Pyrococcus horikoshii in Complex with Zinc
Descriptor: 180aa long hypothetical Pyrazinamidase/Nicotinamidase, ZINC ION
Authors:Du, X, Kim, S.-H.
Deposit date:2001-05-09
Release date:2001-12-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure and mechanism of catalysis of a pyrazinamidase from Pyrococcus horikoshii.
Biochemistry, 40, 2001
6CZW
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BU of 6czw by Molmil
Crystal structure of PT1940 bound to HIF2a-B*:ARNT-B* complex
Descriptor: Aryl hydrocarbon receptor nuclear translocator, Endothelial PAS domain-containing protein 1, {2-bromo-3-(3-chloro-5-fluorophenoxy)-6-[(difluoromethyl)sulfonyl]phenyl}methanol
Authors:Du, X.
Deposit date:2018-04-09
Release date:2018-10-31
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of PT1940 bound to HIF2a-B*:ARNT-B* complex
To Be Published
6D09
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BU of 6d09 by Molmil
Crystal structure of PT2440 bound to HIF2a-B*:ARNT-B* complex
Descriptor: 3-{[(3R)-4-(difluoromethyl)-2,2-difluoro-3-hydroxy-1,1-dioxo-2,3-dihydro-1H-1-benzothiophen-5-yl]oxy}-5-fluorobenzonitrile, Aryl hydrocarbon receptor nuclear translocator, Endothelial PAS domain-containing protein 1
Authors:Du, X.
Deposit date:2018-04-10
Release date:2018-10-31
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of PT1940 bound to HIF2a-B*:ARNT-B* complex
To Be Published
6D0B
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BU of 6d0b by Molmil
Crystal structure of PT1614 bound to HIF2a-B*:ARNT-B* complex
Descriptor: Aryl hydrocarbon receptor nuclear translocator, Endothelial PAS domain-containing protein 1, N-(3-chloro-5-fluorophenyl)-2-nitro-4-[(trifluoromethyl)sulfonyl]aniline
Authors:Du, X.
Deposit date:2018-04-10
Release date:2018-10-31
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of PT1614 bound to HIF2a-B*:ARNT-B* complex
To Be Published
6D0C
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BU of 6d0c by Molmil
Crystal structure of HIF2a-B*:ARNT-B* complex
Descriptor: Aryl hydrocarbon receptor nuclear translocator, Endothelial PAS domain-containing protein 1
Authors:Du, X.
Deposit date:2018-04-10
Release date:2018-10-31
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of PT1940 bound to HIF2a-B*:ARNT-B* complex
To Be Published
6X28
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BU of 6x28 by Molmil
Crystal structure of PT2243 bound to HIF2a-B*:ARNT-B* complex
Descriptor: (1R)-4-(3,5-difluorophenoxy)-7-(trifluoromethyl)-2,3-dihydro-1H-inden-1-ol, Aryl hydrocarbon receptor nuclear translocator, Endothelial PAS domain-containing protein 1
Authors:Du, X.
Deposit date:2020-05-20
Release date:2021-05-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Crystal structure of PT2243 bound to HIF2-PasB*:ARNT-PasB* complex
To Be Published
6X37
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BU of 6x37 by Molmil
Crystal structure of PT3245 bound to HIF2a-B*:ARNT-B* complex
Descriptor: 3-fluoro-5-{[(7R)-7-hydroxy-1-(trifluoromethyl)-6,7-dihydro-5H-cyclopenta[c]pyridin-4-yl]oxy}benzonitrile, Aryl hydrocarbon receptor nuclear translocator, Endothelial PAS domain-containing protein 1
Authors:Du, X.
Deposit date:2020-05-21
Release date:2021-05-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystal structure of PT3245 bound to HIF2a-B*:ARNT-B* complex
To Be Published
6X2H
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BU of 6x2h by Molmil
Crystal structure of PT2863 bound to HIF2a-B*:ARNT-B* complex
Descriptor: Aryl hydrocarbon receptor nuclear translocator, Endothelial PAS domain-containing protein 1, cis-3-({(1S)-7-[dihydroxy(trifluoromethyl)-lambda~4~-sulfanyl]-2,2-difluoro-1-hydroxy-2,3-dihydro-1H-inden-4-yl}oxy)cyclobutane-1-carbonitrile
Authors:Du, X.
Deposit date:2020-05-20
Release date:2021-05-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of PT2863 bound to HIF2a-B*:ARNT-B* complex
To Be Published
6X3D
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BU of 6x3d by Molmil
Crystal structure of PT3388 bound to HIF2a-B*:ARNT-B* complex
Descriptor: (6R,7S)-4-[(3,3-difluorocyclobutyl)oxy]-6-fluoro-1-(trifluoromethyl)-6,7-dihydro-5H-cyclopenta[c]pyridin-7-ol, Aryl hydrocarbon receptor nuclear translocator, Endothelial PAS domain-containing protein 1
Authors:Du, X.
Deposit date:2020-05-21
Release date:2021-05-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of PT3388 bound to HIF2a-B*:ARNT-B* complex
To Be Published
6X21
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BU of 6x21 by Molmil
Crystal structure of PT1673 bound to HIF2a-B*:ARNT-B* complex
Descriptor: 1-(3-bromo-5-fluorophenoxy)-4-[(difluoromethyl)sulfonyl]-2-nitrobenzene, Aryl hydrocarbon receptor nuclear translocator, Endothelial PAS domain-containing protein 1
Authors:Du, X.
Deposit date:2020-05-19
Release date:2021-05-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Crystal structure of PT1673 bound to HIF2a-B*:ARNT-B* complex
To Be Published
7W84
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BU of 7w84 by Molmil
CryoEM structure of apo form ZmRDR2 at 3.4 Angstroms resolution
Descriptor: RNA-dependent RNA polymerase
Authors:Du, X, Yang, Z, Du, J.
Deposit date:2021-12-07
Release date:2022-06-08
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure of plant RNA-DEPENDENT RNA POLYMERASE 2, an enzyme involved in small interfering RNA production.
Plant Cell, 34, 2022
7W88
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BU of 7w88 by Molmil
CryoEM structure of open form ZmRDR2 at 3.5 Angstroms resolution
Descriptor: RNA-dependent RNA polymerase
Authors:Du, X, Yang, Z, Du, J.
Deposit date:2021-12-07
Release date:2022-06-08
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of plant RNA-DEPENDENT RNA POLYMERASE 2, an enzyme involved in small interfering RNA production.
Plant Cell, 34, 2022
7W82
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BU of 7w82 by Molmil
Crystal structure of maize RDR2
Descriptor: RNA-dependent RNA polymerase
Authors:Du, X, Yang, Z, Du, J.
Deposit date:2021-12-07
Release date:2022-06-08
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure of plant RNA-DEPENDENT RNA POLYMERASE 2, an enzyme involved in small interfering RNA production.
Plant Cell, 34, 2022
7YHP
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BU of 7yhp by Molmil
CryoEM structure of Arabidopsis ROS1 in complex with 5mC-dsDNA at 3.1 Angstroms resolution
Descriptor: DNA (40-MER), IRON/SULFUR CLUSTER, Sex-determining region Y protein,REPRESSOR OF SILENCING 1,DNA glycosylase/AP lyase ROS1
Authors:Du, X, Du, J.
Deposit date:2022-07-14
Release date:2022-11-30
Last modified:2023-03-08
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Molecular basis of the plant ROS1-mediated active DNA demethylation.
Nat.Plants, 9, 2023
7YHQ
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BU of 7yhq by Molmil
CryoEM structure of Arabidopsis ROS1 in complex with a covalent-linked reaction intermediate at 3.9 Angstroms resolution
Descriptor: DNA (40-MER), IRON/SULFUR CLUSTER, Sex-determining region Y protein,DNA glycosylase/AP lyase ROS1
Authors:Du, X, Du, J.
Deposit date:2022-07-14
Release date:2022-11-30
Last modified:2023-03-08
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Molecular basis of the plant ROS1-mediated active DNA demethylation.
Nat.Plants, 9, 2023
7YHO
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BU of 7yho by Molmil
CryoEM structure of Arabidopsis ROS1 in complex with TG mismatch dsDNA at 3.3 Angstroms resolution
Descriptor: DNA (40-MER), IRON/SULFUR CLUSTER, Sex-determining region Y protein,DNA glycosylase/AP lyase ROS1
Authors:Du, X, Du, J.
Deposit date:2022-07-14
Release date:2022-11-30
Last modified:2023-03-08
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Molecular basis of the plant ROS1-mediated active DNA demethylation.
Nat.Plants, 9, 2023
7D8U
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BU of 7d8u by Molmil
Crystal structure of the C-terminal domain of pNP868R from African swine fever virus
Descriptor: 1,2-ETHANEDIOL, FORMIC ACID, GTP--RNA guanylyltransferase, ...
Authors:Du, X, Geng, Z, Zhang, H.
Deposit date:2020-10-10
Release date:2020-12-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure and Biochemical Characteristic of the Methyltransferase (MTase) Domain of RNA Capping Enzyme from African Swine Fever Virus.
J.Virol., 2020
6PAI
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BU of 6pai by Molmil
Structure of the human DDB1-DDA1-DCAF15 E3 ubiquitin ligase bound to RBM39 and sulfonamide E7820
Descriptor: 3-cyano-N-(3-cyano-4-methyl-1H-indol-7-yl)benzene-1-sulfonamide, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DDB1- and CUL4-associated factor 15, ...
Authors:Volkov, O.A, Du, X.
Deposit date:2019-06-11
Release date:2019-09-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural Basis and Kinetic Pathway of RBM39 Recruitment to DCAF15 by a Sulfonamide Molecular Glue E7820.
Structure, 27, 2019
8HIL
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BU of 8hil by Molmil
A cryo-EM structure of B. oleracea RNA polymerase V at 3.57 Angstrom
Descriptor: DNA-dependent RNA polymerase IV and V subunit 2, DNA-directed RNA polymerase V largest subunit, DNA-directed RNA polymerase subunit, ...
Authors:Du, X, Xie, G, Hu, H, Du, J.
Deposit date:2022-11-20
Release date:2023-03-22
Last modified:2023-04-05
Method:ELECTRON MICROSCOPY (3.57 Å)
Cite:Structure and mechanism of the plant RNA polymerase V.
Science, 379, 2023
5TBM
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BU of 5tbm by Molmil
Crystal structure of PT2385 bound to HIF2a-B*:ARNT-B* complex
Descriptor: 3-{[(1S)-2,2-difluoro-1-hydroxy-7-(methylsulfonyl)-2,3-dihydro-1H-inden-4-yl]oxy}-5-fluorobenzonitrile, Aryl hydrocarbon receptor nuclear translocator, Endothelial PAS domain-containing protein 1
Authors:Du, X.
Deposit date:2016-09-12
Release date:2016-09-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:A Small-Molecule Antagonist of HIF2 alpha Is Efficacious in Preclinical Models of Renal Cell Carcinoma.
Cancer Res., 76, 2016
5UFP
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BU of 5ufp by Molmil
Crystal structure of PT2399 bound to HIF2a-B*:ARNT-B* complex
Descriptor: 3-({(1S)-7-[(difluoromethyl)sulfonyl]-2,2-difluoro-1-hydroxy-2,3-dihydro-1H-inden-4-yl}oxy)-5-fluorobenzonitrile, Aryl hydrocarbon receptor nuclear translocator, Endothelial PAS domain-containing protein 1
Authors:Du, X.
Deposit date:2017-01-05
Release date:2017-01-25
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:On-target efficacy of a HIF-2 alpha antagonist in preclinical kidney cancer models.
Nature, 539, 2016
5ZWZ
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BU of 5zwz by Molmil
Crystal structure of Arabidopsis thaliana AGDP1 AGD34
Descriptor: Agenet domain-containing protein
Authors:Du, X, Du, J.
Deposit date:2018-05-17
Release date:2018-11-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Arabidopsis AGDP1 links H3K9me2 to DNA methylation in heterochromatin
Nat Commun, 9, 2018
5ZWX
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BU of 5zwx by Molmil
Crystal structure of Raphanus sativus AGDP1 AGD12 in complex with an H3K9me2 peptide
Descriptor: DUF724 domain-containing protein 6-like, H3(1-15)K9me2 peptide
Authors:Du, X, Du, J.
Deposit date:2018-05-17
Release date:2018-11-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Arabidopsis AGDP1 links H3K9me2 to DNA methylation in heterochromatin
Nat Commun, 9, 2018

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