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7CH4
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BU of 7ch4 by Molmil
Crystal structure of the SARS-CoV-2 S RBD in complex with BD-604 Fab
Descriptor: BD-604 Fab H, BD-604 Fab L, Spike protein S1
Authors:Du, S, Xiao, J.Y.
Deposit date:2020-07-05
Release date:2020-09-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Structurally Resolved SARS-CoV-2 Antibody Shows High Efficacy in Severely Infected Hamsters and Provides a Potent Cocktail Pairing Strategy.
Cell, 183, 2020
8SQV
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BU of 8sqv by Molmil
Proteinase K Multiconformer Model at 333K
Descriptor: CALCIUM ION, Proteinase K, SULFATE ION
Authors:Du, S, Wankowicz, S, Yabukarski, F, Doukov, T, Herschlag, D, Fraser, J.S.
Deposit date:2023-05-04
Release date:2023-08-09
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Refinement of multiconformer ensemble models from multi-temperature X-ray diffraction data.
Methods Enzymol., 688, 2023
8SPL
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BU of 8spl by Molmil
Proteinase K Multiconformer Model at 343K
Descriptor: ALA-ALA-ALA-SER-VAL-LYS, CALCIUM ION, Proteinase K, ...
Authors:Du, S, Wankowicz, S, Yabukarski, F, Doukov, T, Herschlag, D, Fraser, J.S.
Deposit date:2023-05-03
Release date:2023-08-09
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:Refinement of multiconformer ensemble models from multi-temperature X-ray diffraction data.
Methods Enzymol., 688, 2023
8SOV
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BU of 8sov by Molmil
Proteinase K Multiconformer Model at 353K
Descriptor: ALA-ALA-ALA-SER-VAL-LYS, CALCIUM ION, Proteinase K, ...
Authors:Du, S, Wankowicz, S, Yabukarski, F, Doukov, T, Herschlag, D, Fraser, J.S.
Deposit date:2023-04-30
Release date:2023-08-09
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.291 Å)
Cite:Refinement of multiconformer ensemble models from multi-temperature X-ray diffraction data.
Methods Enzymol., 688, 2023
8SOG
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BU of 8sog by Molmil
Proteinase K Multiconformer Model at 313K
Descriptor: CALCIUM ION, Proteinase K, SULFATE ION
Authors:Du, S, Wankowicz, S, Yabukarski, F, Doukov, T, Herschlag, D, Fraser, J.S.
Deposit date:2023-04-28
Release date:2023-08-09
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:Refinement of multiconformer ensemble models from multi-temperature X-ray diffraction data.
Methods Enzymol., 688, 2023
8SOU
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BU of 8sou by Molmil
Proteinase K Multiconformer Model at 363K
Descriptor: ALA-ALA-ALA-SER-VAL-LYS, CALCIUM ION, Proteinase K, ...
Authors:Du, S, Wankowicz, S, Yabukarski, F, Doukov, T, Herschlag, D, Fraser, J.S.
Deposit date:2023-04-30
Release date:2023-08-09
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Refinement of multiconformer ensemble models from multi-temperature X-ray diffraction data.
Methods Enzymol., 688, 2023
3M48
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BU of 3m48 by Molmil
GCN4 Leucine Zipper Peptide Mutant
Descriptor: General control protein GCN4, SODIUM ION
Authors:Du, S, Kettering, R.D, Alvarado, J.J, Tortajada, A, Yeh, J.I.
Deposit date:2010-03-10
Release date:2011-02-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.451 Å)
Cite:GCN4 Leucine Zipper Peptide Mutant
To be Published
7CHC
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BU of 7chc by Molmil
Crystal structure of the SARS-CoV-2 S RBD in complex with BD-629 Fab and BD-368-2 Fab
Descriptor: BD-368-2 Fab H, BD-368-2 Fab L, BD-629 Fab H, ...
Authors:Du, S, Xiao, J.Y.
Deposit date:2020-07-05
Release date:2020-09-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Structurally Resolved SARS-CoV-2 Antibody Shows High Efficacy in Severely Infected Hamsters and Provides a Potent Cocktail Pairing Strategy.
Cell, 183, 2020
7CH5
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BU of 7ch5 by Molmil
Crystal structure of the SARS-CoV-2 S RBD in complex with BD-629 Fab
Descriptor: BD-629 Fab H, BD-629 Fab L, Spike protein S1
Authors:Du, S, Xiao, J.Y.
Deposit date:2020-07-05
Release date:2020-09-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structurally Resolved SARS-CoV-2 Antibody Shows High Efficacy in Severely Infected Hamsters and Provides a Potent Cocktail Pairing Strategy.
Cell, 183, 2020
8I4T
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BU of 8i4t by Molmil
Structure of the asymmetric unit of SFTSV virion
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelopment polyprotein
Authors:Du, S, Peng, R, Qi, J, Li, C.
Deposit date:2023-01-21
Release date:2023-09-13
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (5.2 Å)
Cite:Cryo-EM structure of severe fever with thrombocytopenia syndrome virus.
Nat Commun, 14, 2023
8ILQ
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BU of 8ilq by Molmil
Structure of SFTSV Gn-Gc heterodimer
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelopment polyprotein
Authors:Du, S, Peng, R, Qi, J, Li, C.
Deposit date:2023-03-04
Release date:2023-09-13
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Cryo-EM structure of severe fever with thrombocytopenia syndrome virus.
Nat Commun, 14, 2023
5Y92
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BU of 5y92 by Molmil
Crystal structure of ANXUR2 extracellular domain from Arabidopsis thaliana
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Receptor-like protein kinase ANXUR2, ...
Authors:Du, S, Xiao, J.Y.
Deposit date:2017-08-22
Release date:2018-02-28
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.004 Å)
Cite:Crystal structures of the extracellular domains of the CrRLK1L receptor-like kinases ANXUR1 and ANXUR2
Protein Sci., 27, 2018
5Y96
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BU of 5y96 by Molmil
Crystal structure of ANXUR1 extracellular domain from Arabidopsis thaliana
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Receptor-like protein kinase ANXUR1
Authors:Du, S, Xiao, J.Y.
Deposit date:2017-08-22
Release date:2018-02-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of the extracellular domains of the CrRLK1L receptor-like kinases ANXUR1 and ANXUR2
Protein Sci., 27, 2018
7DXI
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BU of 7dxi by Molmil
Structure of Drosophila melanogaster GlcNAc-1-phosphotransferase
Descriptor: CALCIUM ION, FI02838p
Authors:Du, S, Xiao, J, Guopeng, W.
Deposit date:2021-01-19
Release date:2022-02-02
Last modified:2022-08-17
Method:ELECTRON MICROSCOPY (3.53 Å)
Cite:Structural insights into how GlcNAc-1-phosphotransferase directs lysosomal protein transport.
J.Biol.Chem., 298, 2022
7EYA
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BU of 7eya by Molmil
Local CryoEM structure of the SARS-CoV-2 S6PV2 in complex with BD-804 Fab
Descriptor: BD-804H, BD-804L, Spike glycoprotein, ...
Authors:Du, S, Xiao, J.
Deposit date:2021-05-30
Release date:2021-09-08
Last modified:2022-02-16
Method:ELECTRON MICROSCOPY (3.77 Å)
Cite:Structures of SARS-CoV-2 B.1.351 neutralizing antibodies provide insights into cocktail design against concerning variants.
Cell Res., 31, 2021
7EY0
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BU of 7ey0 by Molmil
Local CryoEM structure of the SARS-CoV-2 S6PV2 in complex with BD-813 Fab and BD-744 Fab
Descriptor: BD-744H, BD-744L, BD-813H, ...
Authors:Du, S, Xiao, J.
Deposit date:2021-05-29
Release date:2021-09-08
Last modified:2022-02-16
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structures of SARS-CoV-2 B.1.351 neutralizing antibodies provide insights into cocktail design against concerning variants.
Cell Res., 31, 2021
7V20
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BU of 7v20 by Molmil
CryoEM structure of del68-76/del679-688 prefusion-stabilized spike
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Du, S, Xiao, J.
Deposit date:2021-08-07
Release date:2022-08-10
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:CryoEM structure of del68-76/del679-688 prefusion-stabilized spike
To Be Published
7V24
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BU of 7v24 by Molmil
Local CryoEM structure of del68-76/del679-688 prefusion-stabilized spike in complex with the Fab of N12-9
Descriptor: Spike glycoprotein, the heavy chain of N12-9 Fab, the lignt chain of N12-9 Fab
Authors:Du, S, Xiao, J.
Deposit date:2021-08-07
Release date:2022-08-10
Method:ELECTRON MICROSCOPY (3.29 Å)
Cite:Local CryoEM structure of del68-76/del679-688 prefusion-stabilized spike in complex with the Fab of N12-9
To Be Published
7V22
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BU of 7v22 by Molmil
Local CryoEM structure del68-76/del679-688 prefusion-stabilized spike
Descriptor: Spike glycoprotein
Authors:Du, S, Xiao, J.
Deposit date:2021-08-07
Release date:2022-08-10
Method:ELECTRON MICROSCOPY (3.38 Å)
Cite:Local CryoEM structure del68-76/del679-688 prefusion-stabilized spike
To Be Published
7V23
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BU of 7v23 by Molmil
CryoEM structure of del68-76/del679-688 prefusion-stabilized spike in complex with the Fab of N12-9
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
Authors:Du, S, Xiao, J.
Deposit date:2021-08-07
Release date:2022-08-10
Method:ELECTRON MICROSCOPY (2.96 Å)
Cite:CryoEM structure of del68-76/del679-688 prefusion-stabilized spike in complex with the Fab of N12-9
To Be Published
7UY0
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BU of 7uy0 by Molmil
Crystal structure of human Fgr tyrosine kinase in complex with A-419259
Descriptor: 7-[trans-4-(4-methylpiperazin-1-yl)cyclohexyl]-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine, CHLORIDE ION, GLYCEROL, ...
Authors:Du, S, Alvarado, J.J, Smithgall, T.E.
Deposit date:2022-05-06
Release date:2022-12-28
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:ATP-site inhibitors induce unique conformations of the acute myeloid leukemia-associated Src-family kinase, Fgr.
Structure, 30, 2022
7UY3
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BU of 7uy3 by Molmil
Crystal structure of human Fgr tyrosine kinase in complex with TL02-59
Descriptor: 1,2-ETHANEDIOL, 3-[(6,7-dimethoxyquinazolin-4-yl)oxy]-N-{4-[(4-ethylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl}-4-methylbenzamide, GLYCEROL, ...
Authors:Du, S, Alvarado, J.J, Smithgall, T.E.
Deposit date:2022-05-06
Release date:2022-12-28
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:ATP-site inhibitors induce unique conformations of the acute myeloid leukemia-associated Src-family kinase, Fgr.
Structure, 30, 2022
7WRJ
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BU of 7wrj by Molmil
Local CryoEM structure of the SARS-CoV-2 S6P(B.1.1.529) in complex with BD55-4637 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BD55-4637H, BD55-4637L, ...
Authors:Du, S, Xiao, J.Y.
Deposit date:2022-01-26
Release date:2022-09-28
Method:ELECTRON MICROSCOPY (4.08 Å)
Cite:Local CryoEM structure of the SARS-CoV-2 S6P(B.1.1.529) in complex with BD55-4637 Fab
To Be Published
7WCP
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BU of 7wcp by Molmil
CryoEM structure of the SARS-CoV-2 S6P(B.1.617.2) in complex with SWC11 Fab
Descriptor: SWC11H, SWC11L, Surface glycoprotein
Authors:Du, S, Xiao, J.Y.
Deposit date:2021-12-20
Release date:2022-12-28
Method:ELECTRON MICROSCOPY (3.01 Å)
Cite:CryoEM structure of the SARS-CoV-2 S6P(B.1.617.2) in complex with SWC11 Fab
To Be Published
7WCH
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BU of 7wch by Molmil
CryoEM structure of the SARS-CoV-2 S6P(B.1.617.2) in complex with SWA9 Fab
Descriptor: SWA9H, SWA9L, Surface glycoprotein
Authors:Du, S, Xiao, J.Y.
Deposit date:2021-12-20
Release date:2022-12-28
Method:ELECTRON MICROSCOPY (3.19 Å)
Cite:CryoEM structure of the SARS-CoV-2 S6P(B.1.617.2) in complex with SWA9 Fab
To Be Published

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PDB entries from 2024-03-27

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