Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4Z0W
DownloadVisualize
BU of 4z0w by Molmil
Peptaibol gichigamin isolated from Tolypocladium sup_5
Descriptor: PEPTAIBOL GICHIGAMIN
Authors:Du, L, Risinger, A.L, Mitchell, C.A, Stamps, B.W, Pan, N, King, J.B, Motley, J.L, Thomas, L.M, Yang, Z, Stevenson, B.S, Mooberry, S.L, Cichewicz, R.H.
Deposit date:2015-03-26
Release date:2016-03-30
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Peptaibol gichigamin isolated from Tolypocladium sup_5
TO BE PUBLISHED
3DHV
DownloadVisualize
BU of 3dhv by Molmil
Crystal structure of DltA protein in complex with D-alanine adenylate
Descriptor: ADENOSINE MONOPHOSPHATE, D-ALANINE, D-alanine-poly(phosphoribitol) ligase
Authors:Du, L, He, Y, Luo, Y.
Deposit date:2008-06-18
Release date:2008-11-04
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure and enantiomer selection by D-alanyl carrier protein ligase DltA from Bacillus cereus.
Biochemistry, 47, 2008
4PZP
DownloadVisualize
BU of 4pzp by Molmil
Substrate-free structure of D-alanine carrier protein ligase DltA from Bacillus cereus
Descriptor: D-alanine--poly(phosphoribitol) ligase subunit 1
Authors:Du, L, Atila, M, Luo, Y.
Deposit date:2014-03-31
Release date:2014-11-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Thiolation-enhanced substrate recognition by D-alanyl carrier protein ligase DltA from Bacillus cereus.
F1000Res, 3, 2014
4DC9
DownloadVisualize
BU of 4dc9 by Molmil
Hexameric ring of Methanococcus voltae RadA
Descriptor: DNA repair and recombination protein radA, NITRATE ION
Authors:Du, L, Luo, Y.
Deposit date:2012-01-17
Release date:2012-05-02
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of a hexameric form of RadA recombinase from Methanococcus voltae.
Acta Crystallogr.,Sect.F, 68, 2012
4HYY
DownloadVisualize
BU of 4hyy by Molmil
Filament of octameric rings of DMC1 recombinase from Homo sapiens
Descriptor: Meiotic recombination protein DMC1/LIM15 homolog
Authors:Du, L, Luo, Y.
Deposit date:2012-11-14
Release date:2013-04-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.603 Å)
Cite:Structure of a filament of stacked octamers of human DMC1 recombinase.
Acta Crystallogr.,Sect.F, 69, 2013
8FEC
DownloadVisualize
BU of 8fec by Molmil
Structure of J-PKAc chimera complexed with Aplithianine derivative
Descriptor: 6-[(6P)-6-(4-bromo-1-methyl-1H-imidazol-5-yl)-2,3-dihydro-4H-1,4-thiazin-4-yl]-7H-purine, DnaJ homolog subfamily B member 1,cAMP-dependent protein kinase catalytic subunit alpha, cAMP-dependent protein kinase inhibitor alpha
Authors:Du, L, Wilson, B.A.P, Li, N, Martinez Fiesco, J.A, Dalilian, M, Wang, D, Smith, E.A, Wamiru, A, Goncharova, E.I, Zhang, P, O'Keefe, B.R.
Deposit date:2022-12-06
Release date:2023-10-18
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structures of J-PKAc chimera complexed with Aplithianine and derivatives
To Be Published
8FE2
DownloadVisualize
BU of 8fe2 by Molmil
Structure of J-PKAc chimera complexed with Aplithianine A
Descriptor: 6-[(6M)-6-(1-methyl-1H-imidazol-5-yl)-2,3-dihydro-4H-1,4-thiazin-4-yl]-9H-purine, DnaJ homolog subfamily B member 1, cAMP-dependent protein kinase catalytic subunit alpha, ...
Authors:Du, L, Wilson, B.A.P, Li, N, Dalilian, M, Wang, D, Martinez Fiesco, J.A, Smith, E.A, Wamiru, A, Goncharova, E.I, Zhang, P, O'Keefe, B.R.
Deposit date:2022-12-05
Release date:2023-10-18
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Structures of J-PKAc chimera complexed with Aplithianine and derivatives
To Be Published
8FE5
DownloadVisualize
BU of 8fe5 by Molmil
Structure of J-PKAc chimera complexed with Aplithianine B
Descriptor: 6-[(6P)-6-(1-methyl-1H-imidazol-5-yl)-2,3-dihydro-4H-1,4-thiazin-4-yl]-7,9-dihydro-8H-purin-8-one, DnaJ homolog subfamily B member 1,cAMP-dependent protein kinase catalytic subunit alpha, cAMP-dependent protein kinase inhibitor alpha
Authors:Du, L, Wilson, B.A.P, Li, N, Martinez Fiesco, J.A, Dalilian, M, Wang, D, Smith, E.A, Wamiru, A, Goncharova, E.I, Zhang, P, O'Keefe, B.R.
Deposit date:2022-12-05
Release date:2023-10-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Discovery and Synthesis of a Naturally Derived Protein Kinase Inhibitor that Selectively Inhibits Distinct Classes of Serine/Threonine Kinases.
J.Nat.Prod., 86, 2023
5XJN
DownloadVisualize
BU of 5xjn by Molmil
cytochrome P450 CREJ in complex with (4-ethylphenyl) dihydrogen phosphate
Descriptor: (4-ethylphenyl) dihydrogen phosphate, Cytochrome P450, PROTOPORPHYRIN IX CONTAINING FE
Authors:Dong, S, Du, L, Li, S, Feng, Y.
Deposit date:2017-05-03
Release date:2017-07-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Selective oxidation of aliphatic C-H bonds in alkylphenols by a chemomimetic biocatalytic system
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
8HTW
DownloadVisualize
BU of 8htw by Molmil
Crystal Structure of the ring nuclease Sso2081 Y133F mutant from Saccharolobus solfataricus in its apo form
Descriptor: CRISPR system ring nuclease SSO2081
Authors:Lin, Z, Du, L, Luo, Z.
Deposit date:2022-12-21
Release date:2023-02-15
Last modified:2023-03-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular basis of stepwise cyclic tetra-adenylate cleavage by the type III CRISPR ring nuclease Crn1/Sso2081.
Nucleic Acids Res., 51, 2023
8JBC
DownloadVisualize
BU of 8jbc by Molmil
Crystal Structure of the Csm6 K137A mutant from Thermus thermophilus HB8 in its apo form
Descriptor: CRISPR system endoribonuclease Csm6, NICKEL (II) ION
Authors:Lin, Z, Du, L.
Deposit date:2023-05-08
Release date:2023-12-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Molecular mechanism of allosteric activation of the CRISPR ribonuclease Csm6 by cyclic tetra-adenylate.
Embo J., 43, 2024
8JBB
DownloadVisualize
BU of 8jbb by Molmil
Crystal Structure of the Csm6 from Thermus thermophilus HB8 in complex with A2>p
Descriptor: CRISPR system endoribonuclease Csm6, RNA (5'-R(*AP*(A23))-3')
Authors:Lin, Z, Du, L.
Deposit date:2023-05-08
Release date:2023-12-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Molecular mechanism of allosteric activation of the CRISPR ribonuclease Csm6 by cyclic tetra-adenylate.
Embo J., 43, 2024
8JH1
DownloadVisualize
BU of 8jh1 by Molmil
Crystal Structure of the Csm6 Y161A mutant from Thermus thermophilus HB8 in complex with cyclic-tetraadenylate (cA4)
Descriptor: CRISPR system endoribonuclease Csm6, RNA (5'-R(P*AP*AP*AP*A)-3')
Authors:Lin, Z, Du, L.
Deposit date:2023-05-22
Release date:2023-12-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:Molecular mechanism of allosteric activation of the CRISPR ribonuclease Csm6 by cyclic tetra-adenylate.
Embo J., 43, 2024
7YGH
DownloadVisualize
BU of 7ygh by Molmil
Crystal Structure of the ring nuclease Sso2081 from Saccharolobus solfataricus in complex with cyclic-tetraadenylate (cA4)
Descriptor: CRISPR system ring nuclease SSO2081, RNA (5'-R(P*AP*AP*AP*A)-3')
Authors:Lin, Z, Du, L, Luo, Z.
Deposit date:2022-07-11
Release date:2023-02-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Molecular basis of stepwise cyclic tetra-adenylate cleavage by the type III CRISPR ring nuclease Crn1/Sso2081.
Nucleic Acids Res., 51, 2023
7YGL
DownloadVisualize
BU of 7ygl by Molmil
Crystal Structure of the ring nuclease Sso2081 from Saccharolobus solfataricus in complex with A4>p cleavage intermediate
Descriptor: CRISPR system ring nuclease SSO2081, RNA (5'-R(*AP*AP*AP*(A23))-3')
Authors:Lin, Z, Du, L, Luo, Z.
Deposit date:2022-07-11
Release date:2023-02-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular basis of stepwise cyclic tetra-adenylate cleavage by the type III CRISPR ring nuclease Crn1/Sso2081.
Nucleic Acids Res., 51, 2023
7YHL
DownloadVisualize
BU of 7yhl by Molmil
Crystal Structure of the ring nuclease Sso2081 from Saccharolobus solfataricus in complex with free phosphate
Descriptor: CRISPR system ring nuclease SSO2081, PHOSPHATE ION
Authors:Lin, Z, Du, L, Luo, Z.
Deposit date:2022-07-13
Release date:2023-02-15
Last modified:2023-03-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Molecular basis of stepwise cyclic tetra-adenylate cleavage by the type III CRISPR ring nuclease Crn1/Sso2081.
Nucleic Acids Res., 51, 2023
3FCC
DownloadVisualize
BU of 3fcc by Molmil
CRYSTAL STRUCTURE OF DLTA PROTEIN IN COMPLEX WITH ATP and MAGNESIUM
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, D-alanine--poly(phosphoribitol) ligase subunit 1, MAGNESIUM ION
Authors:Osman, K.T, Du, L, He, Y, Luo, Y.
Deposit date:2008-11-21
Release date:2009-04-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Crystal structure of Bacillus cereus D-alanyl carrier protein ligase (DltA) in complex with ATP.
J.Mol.Biol., 388, 2009
3FCE
DownloadVisualize
BU of 3fce by Molmil
Crystal Structure of Bacillus cereus D-alanyl Carrier Protein Ligase DltA in Complex with ATP: Implications for Adenylation Mechanism
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, D-alanine--poly(phosphoribitol) ligase subunit 1
Authors:Osman, K.T, Du, L, He, Y, Luo, Y.
Deposit date:2008-11-21
Release date:2009-04-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of Bacillus cereus D-alanyl carrier protein ligase (DltA) in complex with ATP.
J.Mol.Biol., 388, 2009
6U9I
DownloadVisualize
BU of 6u9i by Molmil
Crystal structure of BvnE pinacolase from Penicillium brevicompactum
Descriptor: BvnE, DI(HYDROXYETHYL)ETHER, GLYCEROL
Authors:Ye, Y, Du, L, Zhang, X, Newmister, S.A, McCauley, M, Alegre-Requena, J.V, Zhang, W, Mu, S, Minami, A, Fraley, A.E, Adrover-Castellano, M.L, Carney, N, Shende, V.V, Oikawa, H, Kato, H, Tsukamoto, S, Paton, R.S, Williams, R.M, Sherman, D.H, Li, S.
Deposit date:2019-09-09
Release date:2020-09-09
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.777 Å)
Cite:Fungal-derived brevianamide assembly by a stereoselective semipinacolase.
Nat Catal, 3, 2020
7CCF
DownloadVisualize
BU of 7ccf by Molmil
Mechanism insights on steroselective oxidation of phosphorylated ethylphenols with cytochrome P450 CreJ
Descriptor: (3-ethylphenyl) dihydrogen phosphate, Cytochrome P450, PROTOPORPHYRIN IX CONTAINING FE
Authors:Dong, S, Du, L, Li, S.Y, Feng, Y.G.
Deposit date:2020-06-17
Release date:2021-03-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural Basis for Selective Oxidation of Phosphorylated Ethylphenols by Cytochrome P450 Monooxygenase CreJ.
Appl.Environ.Microbiol., 87, 2021
6B7N
DownloadVisualize
BU of 6b7n by Molmil
Cryo-electron microscopy structure of porcine delta coronavirus spike protein in the pre-fusion state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Shang, J, Zheng, Y, Yang, Y, Liu, C, Geng, Q, Tai, W, Du, L, Zhou, Y, Zhang, W, Li, F.
Deposit date:2017-10-04
Release date:2017-10-25
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-Electron Microscopy Structure of Porcine Deltacoronavirus Spike Protein in the Prefusion State
J. Virol., 92, 2018
5GWE
DownloadVisualize
BU of 5gwe by Molmil
cytochrome P450 CREJ
Descriptor: (4-methylphenyl) dihydrogen phosphate, Cytochrome P450, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Dong, S, liu, X, Wang, X, Feng, Y.
Deposit date:2016-09-11
Release date:2017-07-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Selective oxidation of aliphatic C-H bonds in alkylphenols by a chemomimetic biocatalytic system
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
3RDH
DownloadVisualize
BU of 3rdh by Molmil
X-ray induced covalent inhibition of 14-3-3
Descriptor: 14-3-3 protein zeta/delta, 4-[(E)-{4-formyl-5-hydroxy-6-methyl-3-[(phosphonooxy)methyl]pyridin-2-yl}diazenyl]benzoic acid, NICKEL (II) ION
Authors:Horton, J.R, Upadhyay, A.K, Fu, H, Cheng, X.
Deposit date:2011-04-01
Release date:2011-09-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Discovery and structural characterization of a small molecule 14-3-3 protein-protein interaction inhibitor.
Proc.Natl.Acad.Sci.USA, 108, 2011
8AJA
DownloadVisualize
BU of 8aja by Molmil
Structure of the Ancestral Scaffold Antigen-5 of Coronavirus Spike protein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein,Fibritin
Authors:Hueting, D, Schriever, K, Wallden, K, Andrell, J, Syren, P.O.
Deposit date:2022-07-27
Release date:2023-08-16
Last modified:2023-11-01
Method:ELECTRON MICROSCOPY (2.59 Å)
Cite:Design, structure and plasma binding of ancestral beta-CoV scaffold antigens.
Nat Commun, 14, 2023
8AJL
DownloadVisualize
BU of 8ajl by Molmil
Structure of the Ancestral Scaffold Antigen-6 of Coronavirus Spike protein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein,Fibritin
Authors:Hueting, D, Schriever, K, Wallden, K, Andrell, J, Syren, P.O.
Deposit date:2022-07-28
Release date:2023-08-16
Last modified:2023-11-01
Method:ELECTRON MICROSCOPY (2.77 Å)
Cite:Design, structure and plasma binding of ancestral beta-CoV scaffold antigens.
Nat Commun, 14, 2023

 

123>

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon