Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8S9Q
DownloadVisualize
BU of 8s9q by Molmil
HIV-1 Integrase Catalytic Core Domain (CCD) F185H Mutant Complexed with STP03-0404
Descriptor: (2S)-tert-butoxy{4-(4-chlorophenyl)-2,3,6-trimethyl-1-[(1-methyl-1H-pyrazol-4-yl)methyl]-1H-pyrrolo[2,3-b]pyridin-5-yl}acetic acid, Integrase
Authors:Dinh, T, Kvaratskhelia, M.
Deposit date:2023-03-29
Release date:2024-02-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:HIV-1 Integrase Catalytic Core Domain Complexed with STP-0404
To Be Published
7UTC
DownloadVisualize
BU of 7utc by Molmil
Crystal structure of secondary alcohol dehydrogenases from the Thermoanaerobacter ethanolicus with NADP and transition-state analogue inhibitor DMSO
Descriptor: DIMETHYL SULFOXIDE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Secondary-alcohol dehydrogenase, ...
Authors:Dinh, T, Phillips, R.
Deposit date:2022-04-26
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystallographic snapshots of ternary complexes of thermophilic secondary alcohol dehydrogenase from Thermoanaerobacter pseudoethanolicus reveal the dynamics of ligand exchange and the proton relay network.
Proteins, 90, 2022
7UUT
DownloadVisualize
BU of 7uut by Molmil
Ternary complex crystal structure of secondary alcohol dehydrogenases from the Thermoanaerobacter ethanolicus mutants C295A and I86A provides better understanding of catalytic mechanism
Descriptor: (2R)-pentan-2-ol, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, POTASSIUM ION, ...
Authors:Dinh, T, Phillips, R, Rahn, K.
Deposit date:2022-04-28
Release date:2022-05-11
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Crystallographic snapshots of ternary complexes of thermophilic secondary alcohol dehydrogenase from Thermoanaerobacter pseudoethanolicus reveal the dynamics of ligand exchange and the proton relay network.
Proteins, 90, 2022
8D3S
DownloadVisualize
BU of 8d3s by Molmil
HIV-1 Integrase Catalytic Core Domain F185H Mutant Complexed with BKC-110
Descriptor: (2S)-tert-butoxy{4-(4-chlorophenyl)-2,6-dimethyl-1-[(1-methyl-1H-pyrazol-4-yl)methyl]-1H-pyrrolo[2,3-b]pyridin-5-yl}acetic acid, Integrase
Authors:Dinh, T, Kvaratskhelia, M.
Deposit date:2022-06-01
Release date:2023-06-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:HIV-1 Integrase Catalytic Core Domain Complexed with BKC-110
To Be Published
6XNB
DownloadVisualize
BU of 6xnb by Molmil
The Crystal Structure of the S154Y Mutant Carbonyl Reductase from Leifsonia xyli Explains Enhanced Activity for 3,5-Bis(trifluoromethyl)acetophenone Reduction
Descriptor: MAGNESIUM ION, Short chain alcohol dehydrogenase
Authors:Dinh, T, Phillips, R.
Deposit date:2020-07-02
Release date:2020-08-12
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:The crystal structure of the S154Y mutant carbonyl reductase from Leifsonia xyli explains enhanced activity for 3,5-bis(trifluoromethyl)acetophenone reduction.
Arch.Biochem.Biophys., 720, 2022
7UX4
DownloadVisualize
BU of 7ux4 by Molmil
Crystallographic snapshots of ternary complexes of thermophilic secondary alcohol dehydrogenase from Thermoanaerobacter pseudoethanolicus reveal the dynamics of ligand exchange and the proton relay network.
Descriptor: (1S,3S)-3-methylcyclohexan-1-ol, CHLORIDE ION, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Phillips, R.S, Dinh, T.
Deposit date:2022-05-04
Release date:2022-05-18
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Crystallographic snapshots of ternary complexes of thermophilic secondary alcohol dehydrogenase from Thermoanaerobacter pseudoethanolicus reveal the dynamics of ligand exchange and the proton relay network.
Proteins, 90, 2022
1BJ6
DownloadVisualize
BU of 1bj6 by Molmil
1H NMR OF (12-53) NCP7/D(ACGCC) COMPLEX, 10 STRUCTURES
Descriptor: DNA (5'-D(*AP*CP*GP*CP*C)-3'), NUCLEOCAPSID PROTEIN 7, ZINC ION
Authors:Demene, H, Morellet, N, Teilleux, V, Huynh-Dinh, T, De Rocquigny, H, Fournie-Zaluski, M.C, Roques, B.P.
Deposit date:1998-07-03
Release date:1999-02-02
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Structure of the complex between the HIV-1 nucleocapsid protein NCp7 and the single-stranded pentanucleotide d(ACGCC).
J.Mol.Biol., 283, 1998
192D
DownloadVisualize
BU of 192d by Molmil
RECOMBINATION-LIKE STRUCTURE OF D(CCGCGG)
Descriptor: DNA (5'-D(*CP*CP*GP*CP*GP*G)-3'), SODIUM ION
Authors:Malinina, L, Urpi, L, Salas, X, Huynh-Dinh, T, Subirana, J.A.
Deposit date:1994-09-22
Release date:1995-02-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Recombination-like structure of d(CCGCGG).
J.Mol.Biol., 243, 1994
1ESK
DownloadVisualize
BU of 1esk by Molmil
SOLUTION STRUCTURE OF NCP7 FROM HIV-1
Descriptor: GAG POLYPROTEIN, ZINC ION
Authors:Morellet, N, Demene, H, Teilleux, V, Huynh-Dinh, T, de Rocquigny, H, Fournie-Zaluski, M.-C, Roques, B.P.
Deposit date:2000-04-10
Release date:2000-04-26
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution Structure of (12-53)NCp7 of HIV-1
To be Published
6E8C
DownloadVisualize
BU of 6e8c by Molmil
Crystal structure of the double homeodomain of DUX4 in complex with DNA
Descriptor: DNA (5'-D(*GP*CP*GP*TP*AP*AP*TP*CP*TP*AP*AP*TP*CP*AP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*TP*GP*AP*TP*TP*AP*GP*AP*TP*TP*AP*CP*GP*C)-3'), Double homeobox protein 4
Authors:Lee, J.K, Bosnakovski, D, Toso, E.A, Dinh, T, Banerjee, S, Bohl, T.E, Shi, K, Kurahashi, K, Kyba, M, Aihara, H.
Deposit date:2018-07-27
Release date:2018-12-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Crystal Structure of the Double Homeodomain of DUX4 in Complex with DNA.
Cell Rep, 25, 2018
1U3Q
DownloadVisualize
BU of 1u3q by Molmil
Crystal Structure of Estrogen Receptor beta complexed with CL-272
Descriptor: 4-(6-HYDROXY-BENZO[D]ISOXAZOL-3-YL)BENZENE-1,3-DIOL, Estrogen receptor beta
Authors:Malamas, M.S, Manas, E.S, McDevitt, R.E, Gunawan, I, Xu, Z.B, Collini, M.D, Miller, C.P, Dinh, T, Henderson, R.A, Keith Jr, J.C, Harris, H.A.
Deposit date:2004-07-22
Release date:2005-07-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Design and synthesis of aryl diphenolic azoles as potent and selective estrogen receptor-beta ligands.
J.Med.Chem., 47, 2004
1GQU
DownloadVisualize
BU of 1gqu by Molmil
Crystal structure of an alternating A-T oligonucleotide fragment with Hoogsteen base pairing
Descriptor: DNA (5'(*AP*TP*AP*UP*AP*T)-3')
Authors:Abrescia, N.G.A, Thompson, A, Huynh-Dinh, T, Subirana, J.A.
Deposit date:2001-12-05
Release date:2002-12-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of an Antiparallel DNA Fragment with Hoogsteen Base Pairing
Proc.Natl.Acad.Sci.USA, 99, 2002
250D
DownloadVisualize
BU of 250d by Molmil
STRUCTURAL COMPARISON BETWEEN THE D(CTAG) SEQUENCE IN OLIGONUCLEOTIDES AND TRP AND MET REPRESSOR-OPERATOR COMPLEXES
Descriptor: DNA (5'-D(*CP*GP*CP*TP*AP*GP*CP*G)-3')
Authors:Urpi, L, Tereshko, V, Malinina, L, Huynh-Dinh, T, Subirana, J.A.
Deposit date:1996-02-22
Release date:1996-04-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Structural comparison between the d(CTAG) sequence in oligonucleotides and trp and met repressor-operator complexes.
Nat.Struct.Biol., 3, 1996
249D
DownloadVisualize
BU of 249d by Molmil
STRUCTURAL COMPARISON BETWEEN THE D(CTAG) SEQUENCE IN OLIGONUCLEOTIDES AND TRP AND MET REPRESSOR-OPERATOR COMPLEXES
Descriptor: CALCIUM ION, DNA (5'-D(*CP*GP*CP*TP*CP*TP*AP*GP*AP*GP*CP*G)-3')
Authors:Urpi, L, Tereshko, V, Malinina, L, Huynh-Dinh, T, Subirana, J.A.
Deposit date:1996-02-22
Release date:1996-04-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural comparison between the d(CTAG) sequence in oligonucleotides and trp and met repressor-operator complexes.
Nat.Struct.Biol., 3, 1996
1U3R
DownloadVisualize
BU of 1u3r by Molmil
Crystal Structure of Estrogen Receptor beta complexed with WAY-338
Descriptor: 2-(5-HYDROXY-NAPHTHALEN-1-YL)-1,3-BENZOOXAZOL-6-OL, Estrogen receptor beta, steroid receptor coactivator-1
Authors:Malamas, M.S, Manas, E.S, McDevitt, R.E, Gunawan, I, Xu, Z.B, Collini, M.D, Miller, C.P, Dinh, T, Henderson, R.A, Keith Jr, J.C, Harris, H.A.
Deposit date:2004-07-22
Release date:2005-07-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Design and synthesis of aryl diphenolic azoles as potent and selective estrogen receptor-beta ligands.
J.Med.Chem., 47, 2004
1U3S
DownloadVisualize
BU of 1u3s by Molmil
Crystal Structure of Estrogen Receptor beta complexed with WAY-797
Descriptor: 3-(6-HYDROXY-NAPHTHALEN-2-YL)-BENZO[D]ISOOXAZOL-6-OL, Estrogen receptor beta, steroid receptor coactivator-1
Authors:Malamas, M.S, Manas, E.S, McDevitt, R.E, Gunawan, I, Xu, Z.B, Collini, M.D, Miller, C.P, Dinh, T, Henderson, R.A, Keith Jr, J.C, Harris, H.A.
Deposit date:2004-07-22
Release date:2005-07-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Design and synthesis of aryl diphenolic azoles as potent and selective estrogen receptor-beta ligands.
J.Med.Chem., 47, 2004
1JU0
DownloadVisualize
BU of 1ju0 by Molmil
NMR solution structure of a DNA kissing complex
Descriptor: 5'-D(*CP*TP*TP*GP*CP*TP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3'
Authors:Barbault, F, Huynh-Dinh, T, Paoletti, J, Lancelot, G.
Deposit date:2001-08-23
Release date:2002-08-23
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:A new peculiar DNA structure: NMR solution structure of a DNA kissing complex.
J.Biomol.Struct.Dyn., 19, 2002
1JTJ
DownloadVisualize
BU of 1jtj by Molmil
Solution structure of HIV-1Lai mutated SL1 hairpin
Descriptor: HIV-1Lai SL1
Authors:Kieken, F, Arnoult, E, Barbault, F, Paquet, F, Huynh-Dinh, T, Paoletti, J, Genest, D, Lancelot, G.
Deposit date:2001-08-21
Release date:2002-12-11
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:HIV-1(Lai) genomic RNA: combined used of NMR and molecular dynamics simulation for studying the structure and internal dynamics of a mutated SL1 hairpin.
EUR.BIOPHYS.J., 31, 2002
1JUA
DownloadVisualize
BU of 1jua by Molmil
Solution Structure of the Deoxyribose HIV-1Lai Initiation Sequence Stable Dimer
Descriptor: 5'-D(*CP*TP*TP*GP*CP*TP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3'
Authors:Barbault, F, Huynh-Dinh, T, Paoletti, J, Lancelot, G.
Deposit date:2001-08-24
Release date:2004-01-20
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:A new peculiar DNA structure: NMR solution structure of a DNA kissing complex.
J.Biomol.Struct.Dyn., 19, 2002
446D
DownloadVisualize
BU of 446d by Molmil
STRUCTURE OF THE OLIGONUCLEOTIDE D(CGTATATACG) AS A SITE SPECIFIC COMPLEX WITH NICKEL IONS
Descriptor: DNA (5'-D(*CP*GP*TP*AP*TP*AP*TP*AP*CP*G)-3'), NICKEL (II) ION
Authors:Abrescia, N.G.A, Malinina, L, Gonzaga, L.F, Huynh-Dinh, T, Neidle, S, Subirana, J.A.
Deposit date:1999-01-15
Release date:1999-03-18
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of the oligonucleotide d(CGTATATACG) as a site-specific complex with nickel ions.
Nucleic Acids Res., 27, 1999
2D47
DownloadVisualize
BU of 2d47 by Molmil
MOLECULAR STRUCTURE OF A COMPLETE TURN OF A-DNA
Descriptor: DNA (5'-D(*CP*CP*CP*CP*CP*GP*CP*GP*GP*GP*GP*G)-3'), SPERMINE
Authors:Verdaguer, N, Aymami, J, Fernandez-Forner, D, Fita, I, Coll, M, Huynh-Dinh, T, Igolen, J, Subirana, J.A.
Deposit date:1991-10-02
Release date:1991-10-02
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular structure of a complete turn of A-DNA.
J.Mol.Biol., 221, 1991
8IGI
DownloadVisualize
BU of 8igi by Molmil
Crystal structure of HP1526 (XthA)- a base excision DNA repair protein in Helicobacter pylori
Descriptor: 1,3-BUTANEDIOL, Exodeoxyribonuclease (LexA), MANGANESE (II) ION
Authors:Dinh, T.T, Dao, O, Lee, K.H.
Deposit date:2023-02-20
Release date:2023-12-27
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Crystal structure of the apurinic/apyrimidinic endonuclease XthA (HP1526 protein) from Helicobacter pylori.
Biochem.Biophys.Res.Commun., 663, 2023
4PS4
DownloadVisualize
BU of 4ps4 by Molmil
Crystal structure of the complex between IL-13 and M1295 FAB
Descriptor: Interleukin-13, M1295 HEAVY CHAIN, M1295 LIGHT CHAIN
Authors:Teplyakov, A, Obmolova, G, Malia, T, Gilliland, G.L.
Deposit date:2014-03-06
Release date:2014-03-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Human Framework Adaptation of a Mouse Anti-Human Il-13 Antibody.
J.Mol.Biol., 398, 2010
3L5X
DownloadVisualize
BU of 3l5x by Molmil
Crystal structure of the complex between IL-13 and H2L6 FAB
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, H2L6 HEAVY CHAIN, ...
Authors:Teplyakov, A, Obmolova, G, Malia, T, Gilliland, G.L.
Deposit date:2009-12-22
Release date:2010-04-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Human framework adaptation of a mouse anti-human IL-13 antibody.
J.Mol.Biol., 398, 2010
3L5W
DownloadVisualize
BU of 3l5w by Molmil
Crystal structure of the complex between IL-13 and C836 FAB
Descriptor: C836 HEAVY CHAIN, C836 LIGHT CHAIN, GLYCEROL, ...
Authors:Teplyakov, A, Obmolova, G, Malia, T, Gilliland, G.L.
Deposit date:2009-12-22
Release date:2010-04-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Human framework adaptation of a mouse anti-human IL-13 antibody.
J.Mol.Biol., 398, 2010

 

12>

218500

PDB entries from 2024-04-17

PDB statisticsPDBj update infoContact PDBjnumon