Author results

3R4F
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PROHEAD RNA
Descriptor:pRNA, MAGNESIUM ION
Authors:Ding, F., Lu, C., Zhano, W., Rajashankar, K.R., Anderson, D.L., Jardine, P.J., Grimes, S., Ke, A.
Deposit date:2011-03-17
Release date:2011-04-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structure and assembly of the essential RNA ring component of a viral DNA packaging motor.
Proc.Natl.Acad.Sci.USA, 108, 2011
6JXM
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CRYSTAL STRUCTURE OF PHI29 PRNA DOMAIN II
Descriptor:RNA (97-mer), MAGNESIUM ION, BARIUM ION
Authors:Cai, R., Price, I.R., Ding, F., Wu, F., Chen, T., Zhang, Y., Liu, G., Jardine, P.J., Lu, C., Ke, A.
Deposit date:2019-04-24
Release date:2019-08-21
Last modified:2019-10-09
Method:X-RAY DIFFRACTION (3.32 Å)
Cite:ATP/ADP modulates gp16-pRNA conformational change in the Phi29 DNA packaging motor.
Nucleic Acids Res., 47, 2019
1SJ3
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HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, WITH MG2+ BOUND
Descriptor:precursor form of the Hepatitis Delta virus ribozyme, small nuclear ribonucleoprotein A, MAGNESIUM ION
Authors:Ke, A., Zhou, K., Ding, F., Cate, J.H., Doudna, J.A.
Deposit date:2004-03-02
Release date:2004-05-18
Last modified:2011-11-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A Conformational Switch controls hepatitis delta virus ribozyme catalysis
Nature, 429, 2004
1SJ4
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CRYSTAL STRUCTURE OF A C75U MUTANT HEPATITIS DELTA VIRUS RIBOZYME PRECURSOR, IN CU2+ SOLUTION
Descriptor:precursor form of the Hepatitis Delta virus ribozyme, small nuclear ribonucleoprotein A
Authors:Ke, A., Zhou, K., Ding, F., Cate, J.H., Doudna, J.A.
Deposit date:2004-03-02
Release date:2004-05-18
Last modified:2011-11-16
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:A Conformational Switch controls hepatitis delta virus ribozyme catalysis
Nature, 429, 2004
1SJF
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CRYSTAL STRUCTURE OF THE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, WITH C75U MUTAION, IN COBALT HEXAMMINE SOLUTION
Descriptor:Hepatitis Delta virus ribozyme, U1 small nuclear ribonucleoprotein A, COBALT HEXAMMINE(III)
Authors:Ke, A., Zhou, K., Ding, F., Cate, J.H.D., Doudna, J.A.
Deposit date:2004-03-03
Release date:2004-05-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:A conformational switch controls hepatitis delta virus ribozyme catalysis.
Nature, 429, 2004
1VBX
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CRYSTAL STRUCTURE OF THE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, WITH C75U MUTAION, IN EDTA SOLUTION
Descriptor:Hepatitis Delta virus ribozyme, U1 small nuclear ribonucleoprotein A
Authors:Ke, A., Zhou, K., Ding, F., Cate, J.H.D., Doudna, J.A.
Deposit date:2004-03-03
Release date:2004-05-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:A Conformational Switch controls hepatitis delta virus ribozyme catalysis
NATURE, 429, 2004
1VBY
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CRYSTAL STRUCTURE OF THE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, WITH C75U MUTAION, AND MN2+ BOUND
Descriptor:Hepatitis Delta virus ribozyme, U1 small nuclear ribonucleoprotein A, MANGANESE (II) ION, ...
Authors:Ke, A., Zhou, K., Ding, F., Cate, J.H.D., Doudna, J.A.
Deposit date:2004-03-03
Release date:2004-05-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A Conformational Switch controls hepatitis delta virus ribozyme catalysis
NATURE, 429, 2004
1VBZ
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CRYSTAL STRUCTURE OF THE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, WITH C75U MUTAION, IN BA2+ SOLUTION
Descriptor:Hepatitis Delta virus ribozyme, U1 small nuclear ribonucleoprotein A, BARIUM ION
Authors:Ke, A., Zhou, K., Ding, F., Cate, J.H.D., Doudna, J.A.
Deposit date:2004-03-03
Release date:2004-05-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A Conformational Switch controls hepatitis delta virus ribozyme catalysis
NATURE, 429, 2004
1VC0
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CRYSTAL STRUCTURE OF THE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, WITH C75U MUTAION, IN IMIDAZOLE AND SR2+ SOLUTION
Descriptor:Hepatitis Delta virus ribozyme, U1 small nuclear ribonucleoprotein A, STRONTIUM ION
Authors:Ke, A., Zhou, K., Ding, F., Cate, J.H.D., Doudna, J.A.
Deposit date:2004-03-03
Release date:2004-05-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A Conformational Switch controls hepatitis delta virus ribozyme catalysis
NATURE, 429, 2004
1VC5
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CRYSTAL STRUCTURE OF THE WILD TYPE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, IN EDTA SOLUTION
Descriptor:Hepatitis Delta virus ribozyme, U1 small nuclear ribonucleoprotein A, SODIUM ION
Authors:Ke, A., Zhou, K., Ding, F., Cate, J.H.D., Doudna, J.A.
Deposit date:2004-03-04
Release date:2004-05-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:A Conformational Switch controls hepatitis delta virus ribozyme catalysis
NATURE, 429, 2004
1VC6
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CRYSTAL STRUCTURE OF THE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRODUCT WITH C75U MUTAION, CLEAVED IN IMIDAZOLE AND MG2+ SOLUTIONS
Descriptor:Hepatitis Delta virus ribozyme, U1 small nuclear ribonucleoprotein A, MAGNESIUM ION
Authors:Ke, A., Zhou, K., Ding, F., Cate, J.H.D., Doudna, J.A.
Deposit date:2004-03-04
Release date:2004-05-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A Conformational Switch controls hepatitis delta virus ribozyme catalysis
NATURE, 429, 2004
2OIH
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HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR WITH C75U MUTATION AND BOUND TO MONOVALENT CATION TL+
Descriptor:HDV ribozyme, U1 small nuclear ribonucleoprotein A, THALLIUM (I) ION
Authors:Ke, A., Ding, F., Batchelor, J.D., Doudna, J.A.
Deposit date:2007-01-11
Release date:2007-03-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural roles of monovalent cations in the HDV ribozyme.
Structure, 15, 2007
2OJ3
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HEPATITIS DELTA VIRUS RIBOZYME PRECURSOR STRUCTURE, WITH C75U MUTATION, BOUND TO TL+ AND COBALT HEXAMMINE (CO(NH3)63+)
Descriptor:HDV RIBOZYME, U1 small nuclear ribonucleoprotein A, COBALT HEXAMMINE(III), ...
Authors:Ke, A., Ding, F., Batchelor, J.D., Doudna, J.A.
Deposit date:2007-01-12
Release date:2007-03-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural roles of monovalent cations in the HDV ribozyme.
Structure, 15, 2007
3L7Z
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CRYSTAL STRUCTURE OF THE S. SOLFATARICUS ARCHAEAL EXOSOME
Descriptor:Probable exosome complex exonuclease 2, Probable exosome complex exonuclease 1, Probable exosome complex RNA-binding protein 1, ...
Authors:Lu, C., Ding, F., Ke, A.
Deposit date:2009-12-29
Release date:2010-06-23
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Crystal structure of the S. solfataricus archaeal exosome reveals conformational flexibility in the RNA-binding ring.
Plos One, 5, 2010
5H9E
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CRYSTAL STRUCTURE OF E. COLI CASCADE BOUND TO A PAM-CONTAINING DSDNA TARGET (32-NT SPACER) AT 3.20 ANGSTROM RESOLUTION.
Descriptor:CRISPR system Cascade subunit CasA, CRISPR system Cascade subunit CasB, CRISPR system Cascade subunit CasC, ...
Authors:Hayes, R.P., Xiao, Y., Ding, F., van Erp, P.B.G., Rajashankar, K., Bailey, S., Wiedenheft, B., Ke, A.
Deposit date:2015-12-28
Release date:2016-02-17
Last modified:2016-03-09
Method:X-RAY DIFFRACTION (3.21 Å)
Cite:Structural basis for promiscuous PAM recognition in type I-E Cascade from E. coli.
Nature, 530, 2016
5H9F
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CRYSTAL STRUCTURE OF E. COLI CASCADE BOUND TO A PAM-CONTAINING DSDNA TARGET AT 2.45 ANGSTROM RESOLUTION.
Descriptor:CRISPR system Cascade subunit CasA, CRISPR system Cascade subunit CasB, CRISPR system Cascade subunit CasC, ...
Authors:Hayes, R.P., Xiao, Y., Ding, F., van Erp, P.B.G., Rajashankar, K., Bailey, S., Wiedenheft, B., Ke, A.
Deposit date:2015-12-28
Release date:2016-02-17
Last modified:2016-03-09
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structural basis for promiscuous PAM recognition in type I-E Cascade from E. coli.
Nature, 530, 2016
5U07
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CRISPR RNA-GUIDED SURVEILLANCE COMPLEX
Descriptor:CRISPR-associated protein, Cse3 family, Cse2, ...
Authors:Xiao, Y., Luo, M., Hayes, R.P., Kim, J., Ng, S., Ding, F., Liao, M., Ke, A.
Deposit date:2016-11-23
Release date:2017-08-09
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure Basis for Directional R-loop Formation and Substrate Handover Mechanisms in Type I CRISPR-Cas System.
Cell, 170, 2017
5U0A
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CRISPR RNA-GUIDED SURVEILLANCE COMPLEX
Descriptor:CRISPR-associated protein, Cse3 family, Cse1 family, ...
Authors:Xiao, Y., Luo, M., Hayes, R.P., Kim, J., Ng, S., Ding, F., Liao, M., Ke, A.
Deposit date:2016-11-23
Release date:2017-08-09
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure Basis for Directional R-loop Formation and Substrate Handover Mechanisms in Type I CRISPR-Cas System.
Cell, 170, 2017
3E5C
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CRYSTAL STRUCTURE OF THE SMK BOX (SAM-III) RIBOSWITCH WITH SAM
Descriptor:SMK box (SAM-III) Riboswitch, STRONTIUM ION, S-ADENOSYLMETHIONINE
Authors:Lu, C.
Deposit date:2008-08-13
Release date:2008-10-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structures of the SAM-III/S(MK) riboswitch reveal the SAM-dependent translation inhibition mechanism.
Nat.Struct.Mol.Biol., 15, 2008
3E5E
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CRYSTAL STRUCTURES OF THE SMK BOX (SAM-III) RIBOSWITCH WITH SAH
Descriptor:SMK box (SAM-III) Riboswitch for RNA, STRONTIUM ION, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Lu, C.
Deposit date:2008-08-13
Release date:2008-10-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structures of the SAM-III/S(MK) riboswitch reveal the SAM-dependent translation inhibition mechanism.
Nat.Struct.Mol.Biol., 15, 2008
3E5F
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CRYSTAL STRUCTURES OF THE SMK BOX (SAM-III) RIBOSWITCH WITH SE-SAM
Descriptor:SMK box (SAM-III) Riboswitch for RNA, STRONTIUM ION, [(3S)-3-amino-4-hydroxy-4-oxo-butyl]-[[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl]-methyl-selanium
Authors:Lu, C.
Deposit date:2008-08-13
Release date:2008-10-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structures of the SAM-III/S(MK) riboswitch reveal the SAM-dependent translation inhibition mechanism.
Nat.Struct.Mol.Biol., 15, 2008
4ES1
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DOUBLE-STRANDED ENDONUCLEASE ACTIVITY IN B. HALODURANS CLUSTERED REGULARLY INTERSPACED SHORT PALINDROMIC REPEATS (CRISPR)-ASSOCIATED CAS2 PROTEIN
Descriptor:BH0342 protein
Authors:Ke, A., Nam, K.H.
Deposit date:2012-04-21
Release date:2012-08-22
Last modified:2018-11-28
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Double-stranded endonuclease activity in Bacillus halodurans clustered regularly interspaced short palindromic repeats (CRISPR)-associated Cas2 protein.
J. Biol. Chem., 287, 2012
4ES2
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DOUBLE-STRANDED ENDONUCLEASE ACTIVITY IN B. HALODURANS CLUSTERED REGULARLY INTERSPACED SHORT PALINDROMIC REPEATS (CRISPR)-ASSOCIATED CAS2 PROTEIN
Descriptor:BH0342 protein
Authors:Ke, A., Nam, K.H.
Deposit date:2012-04-21
Release date:2012-08-22
Last modified:2018-11-28
Method:X-RAY DIFFRACTION (1.299 Å)
Cite:Double-stranded endonuclease activity in Bacillus halodurans clustered regularly interspaced short palindromic repeats (CRISPR)-associated Cas2 protein.
J. Biol. Chem., 287, 2012
4ES3
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DOUBLE-STRANDED ENDONUCLEASE ACTIVITY IN B. HALODURANS CLUSTERED REGULARLY INTERSPACED SHORT PALINDROMIC REPEATS (CRISPR)-ASSOCIATED CAS2 PROTEIN
Descriptor:BH0342 protein, 1,2-ETHANEDIOL
Authors:Ke, A., Nam, K.H.
Deposit date:2012-04-21
Release date:2012-08-22
Last modified:2018-11-28
Method:X-RAY DIFFRACTION (1.704 Å)
Cite:Double-stranded endonuclease activity in Bacillus halodurans clustered regularly interspaced short palindromic repeats (CRISPR)-associated Cas2 protein.
J. Biol. Chem., 287, 2012
4F3M
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CRYSTAL STRUCTURE OF CRISPR-ASSOCIATED PROTEIN
Descriptor:BH0337 protein, 1,2-ETHANEDIOL, SULFATE ION
Authors:Ke, A., Nam, K.H.
Deposit date:2012-05-09
Release date:2012-08-15
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Cas5d Protein Processes Pre-crRNA and Assembles into a Cascade-like Interference Complex in Subtype I-C/Dvulg CRISPR-Cas System.
Structure, 20, 2012
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171916
PDB entries from 2020-12-02