Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2NOK
DownloadVisualize
BU of 2nok by Molmil
Crystal Structure of an RNA domain from Hepatitis C virus.
Descriptor: 5'-R(*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*UP*GP*UP*CP*UP*UP*CP*AP*CP*GP*CP*C)-3', 5'-R(*GP*CP*GP*UP*GP*UP*CP*GP*UP*GP*CP*AP*GP*CP*CP*UP*CP*CP*GP*G)-3', MAGNESIUM ION, ...
Authors:Dibrov, S.M, Johnston-Cos, H, Weng, Y.H.
Deposit date:2006-10-25
Release date:2007-02-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:Functional architecture of HCV IRES domain II stabilized by divalent metal ions in the crystal and in solution.
Angew.Chem.Int.Ed.Engl., 46, 2007
4P97
DownloadVisualize
BU of 4p97 by Molmil
Functional conservation despite structural divergence in ligand-responsive RNA switches
Descriptor: CALCIUM ION, RNA (5'-R(*CP*GP*AP*GP*AP*GP*GP*AP*CP*GP*G)-3'), RNA (5'-R(*CP*GP*UP*CP*UP*AP*CP*CP*CP*AP*CP*CP*UP*CP*GP*C)-3')
Authors:Boerneke, M.A, Dibrov, S.M, Hermann, T.H.
Deposit date:2014-04-02
Release date:2015-03-04
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Functional conservation despite structural divergence in ligand-responsive RNA switches.
Proc.Natl.Acad.Sci.USA, 111, 2014
4PHY
DownloadVisualize
BU of 4phy by Molmil
Functional conservation despite structural divergence in ligand-responsive RNA switches
Descriptor: ACETATE ION, MAGNESIUM ION, RNA (26-MER), ...
Authors:Boerneke, M.A, Dibrov, S.M, Hermann, T.H.
Deposit date:2014-05-07
Release date:2015-02-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Functional conservation despite structural divergence in ligand-responsive RNA switches.
Proc.Natl.Acad.Sci.USA, 111, 2014
3LOA
DownloadVisualize
BU of 3loa by Molmil
Crystal Structure Analysis of the RNA construct with two adjacent ligand binding sites of helix h44 in 16S ribosomal RNA
Descriptor: 5'-R(*CP*CP*GP*CP*GP*CP*CP*CP*GP*(5BU)P*CP*AP*CP*AP*CP*CP*AP*CP*CP*CP*G)-3', 5'-R(*GP*GP*GP*(5BU)P*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*UP*AP*AP*CP*GP*CP*GP*GP*C)-3', MAGNESIUM ION, ...
Authors:Dibrov, S.
Deposit date:2010-02-03
Release date:2010-08-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.299 Å)
Cite:A model for the study of ligand binding to the ribosomal RNA helix h44.
Nucleic Acids Res., 38, 2010
3TZR
DownloadVisualize
BU of 3tzr by Molmil
Structure of a Riboswitch-like RNA-ligand complex from the Hepatitis C Virus Internal Ribosome Entry Site
Descriptor: (8R)-8-[(dimethylamino)methyl]-1-[3-(dimethylamino)propyl]-1,7,8,9-tetrahydrochromeno[5,6-d]imidazol-2-amine, 5'-R(*CP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*UP*GP*UP*CP*UP*UP*CP*CP*C)-3', 5'-R(*GP*GP*UP*CP*GP*UP*GP*CP*AP*GP*CP*CP*UP*CP*GP*G)-3', ...
Authors:Dibrov, S.M, Ding, K, Brunn, N, Parker, M.A, Bergdahl, B.M, Wyles, D.L, Hermann, T.
Deposit date:2011-09-27
Release date:2012-03-21
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.212 Å)
Cite:Structure of a Riboswitch in the Hepatitis C Virus Internal Ribosome Entry Site
To be Published
3P59
DownloadVisualize
BU of 3p59 by Molmil
First Crystal Structure of a RNA Nanosquare
Descriptor: COBALT HEXAMMINE(III), MAGNESIUM ION, RNA (5'-R(*CP*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*(5BU)P*G)-3'), ...
Authors:Dibrov, S, Hermann, T, McLean, J, Parsons, J.
Deposit date:2010-10-08
Release date:2011-04-06
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1793 Å)
Cite:Self-assembling RNA square.
Proc.Natl.Acad.Sci.USA, 108, 2011
5CNR
DownloadVisualize
BU of 5cnr by Molmil
Crystal structure-guided design of self-assembling RNA nano triangles
Descriptor: CHLORIDE ION, RNA (5'-R(*AP*GP*AP*GP*GP*AP*CP*GP*GP*CP*G)-3'), RNA (5'-R(*GP*UP*CP*UP*AP*CP*CP*CP*AP*CP*CP*UP*CP*GP*CP*C)-3')
Authors:Boerneke, M, Dibrov, S, Hermann, T.
Deposit date:2015-07-18
Release date:2016-03-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Crystal-Structure-Guided Design of Self-Assembling RNA Nanotriangles.
Angew.Chem.Int.Ed.Engl., 55, 2016
4GYH
DownloadVisualize
BU of 4gyh by Molmil
Structure of human thymidylate synthase at high salt conditions
Descriptor: SULFATE ION, Thymidylate synthase
Authors:Brunn, N, Dibrov, S, Hermann, T.
Deposit date:2012-09-05
Release date:2012-10-03
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.005 Å)
Cite:Analysis of mRNA recognition by human thymidylate synthase.
Biosci.Rep., 34, 2014
4H1I
DownloadVisualize
BU of 4h1i by Molmil
Structure of human thymidylate synthase at low salt conditions
Descriptor: SULFATE ION, Thymidylate synthase
Authors:Brunn, N, Dibrov, S, Hermann, T.
Deposit date:2012-09-10
Release date:2012-10-03
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.095 Å)
Cite:Analysis of mRNA recognition by human thymidylate synthase.
Biosci.Rep., 34, 2014

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon