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1ZY3
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BU of 1zy3 by Molmil
Structural model of complex of Bcl-w protein with Bid BH3-peptide
Descriptor: Apoptosis regulator Bcl-W, BH3-peptide from BH3 interacting domain death agonist protein
Authors:Denisov, A.Y, Gehring, K.
Deposit date:2005-06-09
Release date:2006-02-14
Last modified:2021-10-20
Method:SOLUTION NMR
Cite:Structural Model of the BCL-w-BID Peptide Complex and Its Interactions with Phospholipid Micelles.
Biochemistry, 45, 2006
1TQZ
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BU of 1tqz by Molmil
Solution structure of NECAP1 protein
Descriptor: NECAP1
Authors:Denisov, A.Y, Ritter, B, McPherson, P.S, Gehring, K.
Deposit date:2004-06-18
Release date:2005-07-26
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of NECAP1 protein
To be Published
2LZW
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BU of 2lzw by Molmil
DNA duplex containing mispair-aligned O6G-heptylene-O6G interstrand cross-link
Descriptor: DNA (5'-D(*CP*GP*AP*AP*AP*GP*TP*TP*TP*CP*G)-3'), HEPTANE
Authors:Denisov, A.Y, McManus, F.P, Noronha, A.M, Wilds, C.J.
Deposit date:2012-10-11
Release date:2013-10-16
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural basis of interstrand cross-link repair by O 6 -alkylguanine DNA alkyltransferase.
Org.Biomol.Chem., 15, 2017
2LZV
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BU of 2lzv by Molmil
DNA duplex containing mispair-aligned O4U-heptylene-O4U interstrand cross-link
Descriptor: DNA (5'-D(*CP*GP*AP*AP*AP*UP*TP*TP*TP*CP*G)-3'), HEPTANE
Authors:Denisov, A.Y, McManus, F.P, Noronha, A.M, Wilds, C.J.
Deposit date:2012-10-11
Release date:2013-10-16
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural basis of interstrand cross-link repair by O 6 -alkylguanine DNA alkyltransferase.
Org.Biomol.Chem., 15, 2017
2K18
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BU of 2k18 by Molmil
Solution structure of bb' domains of human protein disulfide isomerase
Descriptor: Protein disulfide-isomerase
Authors:Denisov, A.Y, Maattanen, P, Dabrowski, C, Kozlov, G, Thomas, D.Y, Gehring, K.
Deposit date:2008-02-22
Release date:2008-04-29
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure of the bb' domains of human protein disulfide isomerase.
Febs J., 276, 2009
1HO6
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BU of 1ho6 by Molmil
CHIMERIC ARABINONUCLEIC ACID (ANA) HAIRPIN WITH ANA/RNA HYBRID STEM
Descriptor: DNA/RNA (5'-R(*GP*GP*AP*C)-D(P*TP*TP*CP*G)-(P*(GAO)P*(UAR)P*(CAR)P*(CAR)-3')
Authors:Denisov, A.Y, Gehring, K.
Deposit date:2000-12-08
Release date:2001-11-07
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure of an arabinonucleic acid (ANA)/RNA duplex in a chimeric hairpin: comparison with 2'-fluoro-ANA/RNA and DNA/RNA hybrids.
Nucleic Acids Res., 29, 2001
1HOQ
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BU of 1hoq by Molmil
CHIMERIC RNA/DNA HAIRPIN
Descriptor: DNA/RNA (5'-R(*GP*GP*AP*C)-D(P*TP*TP*CP*GP*GP*TP*CP*C)-3')
Authors:Denisov, A.Y, Gehring, K.
Deposit date:2000-12-11
Release date:2001-11-07
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure of an arabinonucleic acid (ANA)/RNA duplex in a chimeric hairpin: comparison with 2'-fluoro-ANA/RNA and DNA/RNA hybrids.
Nucleic Acids Res., 29, 2001
1ME1
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BU of 1me1 by Molmil
Chimeric hairpin with 2',5'-linked RNA loop and RNA stem
Descriptor: 5'-R(*GP*GP*AP*CP*(U25)P*(U25)P*(C25)P*(5GP)P*GP*UP*CP*C)-3'
Authors:Denisov, A.Y, Hannoush, R.N, Gehring, K, Damha, M.J.
Deposit date:2002-08-07
Release date:2003-08-19
Last modified:2011-08-24
Method:SOLUTION NMR
Cite:A Novel RNA Motif Based on the Structure of Unusually Stable 2',5'-Linked r(UUCG) Loops
J.AM.CHEM.SOC., 125, 2003
1MK3
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BU of 1mk3 by Molmil
SOLUTION STRUCTURE OF HUMAN BCL-W PROTEIN
Descriptor: Apoptosis regulator Bcl-W
Authors:Denisov, A.Y, Madiraju, M.S, Chen, G, Khadir, A, Beauparlant, P, Attardo, G, Shore, G.C, Gehring, K.
Deposit date:2002-08-28
Release date:2003-06-03
Last modified:2021-10-27
Method:SOLUTION NMR
Cite:Solution structure of human BCL-w: modulation of ligand binding by the C-terminal helix
J.BIOL.CHEM., 278, 2003
1ME0
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BU of 1me0 by Molmil
Chimeric hairpin with 2',5'-linked RNA loop and DNA stem
Descriptor: DNA/RNA (5'-D(*GP*GP*AP*C)-R(P*(U25)P*(U25)P*(C25)P*(5GP))-D(P*GP*TP*CP*C)-3')
Authors:Denisov, A.Y, Hannoush, R.N, Gehring, K, Damha, M.J.
Deposit date:2002-08-07
Release date:2003-08-19
Last modified:2011-08-24
Method:SOLUTION NMR
Cite:A Novel RNA Motif Based on the Structure of Unusually Stable 2',5'-Linked r(UUCG) Loops
J.AM.CHEM.SOC., 125, 2003
2MH6
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BU of 2mh6 by Molmil
Solution structure of DNA duplex containing N3T-ethylene-N1I interstrand cross-link
Descriptor: 5'-D(*CP*AP*GP*TP*TP*CP*CP*A)-3', 5'-D(*TP*GP*GP*AP*IP*CP*TP*G)-3'
Authors:Denisov, A.Y, O'Flaherty, D.K, Noronha, A.M, Wilds, C.J.
Deposit date:2013-11-18
Release date:2014-07-02
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:NMR Structure of an Ethylene Interstrand Cross-Linked DNA which Mimics the Lesion Formed by 1,3-Bis(2-chloroethyl)-1-nitrosourea.
Chemmedchem, 9, 2014
2I3E
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BU of 2i3e by Molmil
Solution structure of catalytic domain of goldfish RICH protein
Descriptor: G-RICH
Authors:Denisov, A.Y, Kozlov, G, Gehring, K.
Deposit date:2006-08-18
Release date:2007-03-06
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution structure of the catalytic domain of RICH protein from goldfish.
Febs J., 274, 2007
2ILX
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BU of 2ilx by Molmil
Solution structure of catalytic domain of rat 2',3'-cyclic-nucleotide 3'-phosphodiesterase (CNP) protein
Descriptor: 2',3'-cyclic-nucleotide 3'-phosphodiesterase
Authors:Denisov, A.Y, Kozlov, G, Gehring, K.
Deposit date:2006-10-03
Release date:2007-03-06
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution structure of the catalytic domain of RICH protein from goldfish.
Febs J., 274, 2007
2DAU
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BU of 2dau by Molmil
DICKERSON-DREW DNA DODECAMER, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')
Authors:Denisov, A, Bekiroglu, S, Maltseva, T, Sandstrom, A, Altmann, K.-H, Egli, M, Chattopadhyaya, J.
Deposit date:1998-01-20
Release date:1998-05-27
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:The solution conformation of a carbocyclic analog of the Dickerson-Drew dodecamer: comparison with its own X-ray structure and that of the NMR structure of the native counterpart.
J.Biomol.Struct.Dyn., 16, 1998
1TAN
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BU of 1tan by Molmil
TANDEM DNA, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: DNA (5'-D(P*CP*AP*GP*C)-3'), DNA (5'-D(P*TP*CP*CP*A)-3'), DNA (5'-D(P*TP*GP*GP*AP*GP*CP*TP*G)-3')
Authors:Denisov, A, Sandstrom, A, Maltseva, T, Pyshnyi, D, Ivanova, E, Zarytova, V, Chattopadhyaya, J.
Deposit date:1997-06-17
Release date:1997-09-17
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:The NMR structure of estrone (Es)-tethered tandem DNA duplex: [d(5'pCAGCp3')-Es] + [Es-d(5'pTCCA3')]: d(5'pTGGAGCTG3').
J.Biomol.Struct.Dyn., 15, 1997
1DAU
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BU of 1dau by Molmil
Analog of dickerson-drew DNA dodecamer with 6'-alpha-methyl carbocyclic thymidines, NMR, minimized average structure
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*(T32)P*(T32)P*CP*GP*CP*G)-3')
Authors:Denisov, A, Bekiroglu, S, Maltseva, T, Sandstrom, A, Altmann, K.-H, Egli, M, Chattopadhyaya, J.
Deposit date:1998-01-21
Release date:1998-05-27
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:The solution conformation of a carbocyclic analog of the Dickerson-Drew dodecamer: comparison with its own X-ray structure and that of the NMR structure of the native counterpart.
J.Biomol.Struct.Dyn., 16, 1998
1ESS
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BU of 1ess by Molmil
STEROID TETHERED DNA, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: DNA (5'-D(P*CP*AP*GP*C)-3'), DNA (5'-D(P*TP*CP*CP*A)-3'), DNA (5'-D(P*TP*GP*GP*AP*GP*CP*TP*G)-3'), ...
Authors:Denisov, A, Sandstrom, A, Maltseva, T, Pyshnyi, D, Ivanova, E, Zarytova, V, Chattopadhyaya, J.
Deposit date:1997-06-17
Release date:1997-09-17
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:The NMR structure of estrone (Es)-tethered tandem DNA duplex: [d(5'pCAGCp3')-Es] + [Es-d(5'pTCCA3')]: d(5'pTGGAGCTG3').
J.Biomol.Struct.Dyn., 15, 1997
1JDQ
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BU of 1jdq by Molmil
Solution Structure of TM006 Protein from Thermotoga maritima
Descriptor: HYPOTHETICAL PROTEIN TM0983
Authors:Denisov, A.Y, Finak, G, Yee, A, Kozlov, G, Gehring, K, Arrowsmith, C.H.
Deposit date:2001-06-14
Release date:2002-02-27
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:An NMR approach to structural proteomics.
Proc.Natl.Acad.Sci.USA, 99, 2002
5TGG
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BU of 5tgg by Molmil
Solution structure of parallel stranded adenosine duplex
Descriptor: RNA/DNA (5'-D(P*T)-R(*(A2M)P*(A2M)P*(A2M)P*(A2M))-D(P*A)-R(P*(A2M)P*(A2M)P*(A2M))-3')
Authors:Denisov, A, Noronha, A, Gehring, K, Wilds, C.
Deposit date:2016-09-27
Release date:2017-08-09
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Influence of nucleotide modifications at the C2' position on the Hoogsteen base-paired parallel-stranded duplex of poly(A) RNA.
Nucleic Acids Res., 45, 2017
1FC8
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BU of 1fc8 by Molmil
NMR SOLUTION STRUCTURE OF A CHIMERIC OLIGONUCLEOTIDE HAIRPIN R(GGAC)D(TTCG)2'F-A(GTCC)
Descriptor: 5'-R(*GP*GP*AP*CP)D(*TP*TP*CP*GP*(GFL)P*(TAF)P*(CFL)P*(CFL))-3'
Authors:Trempe, J.-F, Gehring, K.
Deposit date:2000-07-18
Release date:2001-05-30
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:NMR solution structure of an oligonucleotide hairpin with a 2'F-ANA/RNA stem: implications for RNase H specificity toward DNA/RNA hybrid duplexes.
J.Am.Chem.Soc., 123, 2001
3O10
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BU of 3o10 by Molmil
Crystal structure of the HEPN domain from human sacsin
Descriptor: MALONATE ION, Sacsin
Authors:Kozlov, G, Gehring, K.
Deposit date:2010-07-20
Release date:2011-03-30
Last modified:2014-07-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis of defects in the sacsin HEPN domain responsible for autosomal recessive spastic ataxia of Charlevoix-Saguenay (ARSACS).
J.Biol.Chem., 286, 2011
5VXQ
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BU of 5vxq by Molmil
X-Ray crystallography structure of the parallel stranded duplex formed by 5-rA5-dA-rA5
Descriptor: AMMONIUM ION, DNA/RNA (5'-R(*AP*AP*AP*AP*A)-D(P*A)-R(P*AP*AP*AP*AP*A)-3')
Authors:Xie, J, Chen, Y, Wei, X, Kozlov, G, Gehring, K.
Deposit date:2017-05-23
Release date:2017-08-16
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.002 Å)
Cite:Influence of nucleotide modifications at the C2' position on the Hoogsteen base-paired parallel-stranded duplex of poly(A) RNA.
Nucleic Acids Res., 45, 2017
3IDV
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BU of 3idv by Molmil
Crystal structure of the a0a fragment of ERp72
Descriptor: CHLORIDE ION, Protein disulfide-isomerase A4, ZINC ION
Authors:Kozlov, G, Gehring, K.
Deposit date:2009-07-21
Release date:2010-07-07
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure of the Catalytic a(0)a Fragment of the Protein Disulfide Isomerase ERp72.
J.Mol.Biol., 401, 2010

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