Author results

4NC7
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N-TERMINAL DOMAIN OF DELTA-SUBUNIT OF RNA POLYMERASE COMPLEXED WITH I3C AND NICKEL IONS
Descriptor:DNA-directed RNA polymerase subunit delta, 5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid, NICKEL (II) ION
Authors:Demo, G., Papouskova, V., Komarek, J., Sanderova, H., Rabatinova, A., Krasny, L., Zidek, L., Sklenar, V., Wimmerova, M.
Deposit date:2013-10-24
Release date:2014-07-02
Last modified:2014-08-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:X-ray vs. NMR structure of N-terminal domain of delta-subunit of RNA polymerase.
J.Struct.Biol., 187, 2014
4NC8
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N-TERMINAL DOMAIN OF DELTA-SUBUNIT OF RNA POLYMERASE COMPLEXED WITH NICKEL IONS
Descriptor:DNA-directed RNA polymerase subunit delta, NICKEL (II) ION
Authors:Demo, G., Papouskova, V., Komarek, J., Sanderova, H., Rabatinova, A., Krasny, L., Zidek, L., Sklenar, V., Wimmerova, M.
Deposit date:2013-10-24
Release date:2014-07-02
Last modified:2014-08-20
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:X-ray vs. NMR structure of N-terminal domain of delta-subunit of RNA polymerase.
J.Struct.Biol., 187, 2014
5U9F
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3.2 A CRYO-EM ARFA-RF2 RIBOSOME RESCUE COMPLEX (STRUCTURE II)
Descriptor:16S ribosomal RNA, 23S ribosomal RNA, 5S ribosomal RNA, ...
Authors:Demo, G., Svidritskiy, E., Madireddy, R., Diaz-Avalos, R., Grant, T., Grigorieff, N., Sousa, D., Korostelev, A.A.
Deposit date:2016-12-16
Release date:2017-03-22
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Mechanism of ribosome rescue by ArfA and RF2.
Elife, 6, 2017
5U9G
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3.2 A CRYO-EM ARFA-RF2 RIBOSOME RESCUE COMPLEX (STRUCTURE I)
Descriptor:16S ribosomal RNA, 23S ribosomal RNA, 5S ribosomal RNA, ...
Authors:Demo, G., Svidritskiy, E., Madireddy, R., Diaz-Avalos, R., Grant, T., Grigorieff, N., Sousa, D., Korostelev, A.A.
Deposit date:2016-12-16
Release date:2017-03-22
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Mechanism of ribosome rescue by ArfA and RF2.
Elife, 6, 2017
6AWB
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STRUCTURE OF 30S RIBOSOMAL SUBUNIT AND RNA POLYMERASE COMPLEX IN NON-ROTATED STATE
Descriptor:16S rRNA, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Demo, G., Rasouly, A., Vasilyev, N., Loveland, A.B., Diaz-Avalos, R., Grigorieff, N., Nudler, E., Korostelev, A.A.
Deposit date:2017-09-05
Release date:2017-10-18
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (6.7 Å)
Cite:Structure of RNA polymerase bound to ribosomal 30S subunit.
Elife, 6, 2017
6AWC
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STRUCTURE OF 30S RIBOSOMAL SUBUNIT AND RNA POLYMERASE COMPLEX IN ROTATED STATE
Descriptor:16S rRNA, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Demo, G., Rasouly, A., Vasilyev, N., Loveland, A.B., Diaz-Avalos, R., Grigorieff, N., Nudler, E., Korostelev, A.A.
Deposit date:2017-09-05
Release date:2017-10-18
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (7.9 Å)
Cite:Structure of RNA polymerase bound to ribosomal 30S subunit.
Elife, 6, 2017
6AWD
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STRUCTURE OF 30S (S1 DEPLETED) RIBOSOMAL SUBUNIT AND RNA POLYMERASE COMPLEX
Descriptor:16S rRNA, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Demo, G., Rasouly, A., Vasilyev, N., Loveland, A.B., Diaz-Avalos, R., Grigorieff, N., Nudler, E., Korostelev, A.A.
Deposit date:2017-09-05
Release date:2017-10-18
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (8.1 Å)
Cite:Structure of RNA polymerase bound to ribosomal 30S subunit.
Elife, 6, 2017
5MXE
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PHOTORHABDUS ASYMBIOTICA LECTIN (PHL) IN FREE FORM
Descriptor:Photorhabdus asymbiotica lectin PHL, SODIUM ION, CHLORIDE ION
Authors:Jancarikova, G., Houser, J., Demo, G., Wimmerova, M.
Deposit date:2017-01-23
Release date:2017-08-09
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Characterization of novel bangle lectin from Photorhabdus asymbiotica with dual sugar-binding specificity and its effect on host immunity.
PLoS Pathog., 13, 2017
5MXF
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PHOTORHABDUS ASYMBIOTICA LECTIN (PHL) IN COMPLEX WITH ALPHA-METHYL FUCOSIDE
Descriptor:Photorhabdus asymbiotica lectin PHL, ALPHA-L-METHYL-FUCOSE, SODIUM ION, ...
Authors:Jancarikova, G., Houser, J., Demo, G., Wimmerova, M.
Deposit date:2017-01-23
Release date:2017-08-09
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Characterization of novel bangle lectin from Photorhabdus asymbiotica with dual sugar-binding specificity and its effect on host immunity.
PLoS Pathog., 13, 2017
5MXG
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PHOTORHABDUS ASYMBIOTICA LECTIN (PHL) IN COMPLEX WITH BLOOD GROUP H TRISACCHARIDE
Descriptor:Photorhabdus asymbiotica lectin PHL, ALPHA-L-FUCOSE, BETA-D-GALACTOSE, ...
Authors:Jancarikova, G., Houser, J., Demo, G., Wimmerova, M.
Deposit date:2017-01-23
Release date:2017-08-09
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Characterization of novel bangle lectin from Photorhabdus asymbiotica with dual sugar-binding specificity and its effect on host immunity.
PLoS Pathog., 13, 2017
5MXH
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PHOTORHABDUS ASYMBIOTICA LECTIN (PHL) IN COMPLEX WITH D-GALACTOSE
Descriptor:Photorhabdus asymbiotica lectin PHL, BETA-D-GALACTOSE, MAGNESIUM ION, ...
Authors:Jancarikova, G., Houser, J., Demo, G., Wimmerova, M.
Deposit date:2017-01-23
Release date:2017-08-09
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Characterization of novel bangle lectin from Photorhabdus asymbiotica with dual sugar-binding specificity and its effect on host immunity.
PLoS Pathog., 13, 2017
6GXR
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CRYSTAL STRUCTURE OF BP39L LECTIN FROM BURKHOLDERIA PSEUDOMALLEI AT 1.7 A RESOLUTION
Descriptor:BP39L lectin, SULFATE ION
Authors:Sykorova, P., Novotna, J., Demo, G., Pompidor, G., Dubska, E., Komarek, J., Fujdiarova, E., Haronikova, L., Varrot, A., Imberty, A., Shilova, N., Bovin, N., Pokorna, M., Wimmerova, M.
Deposit date:2018-06-27
Release date:2019-12-04
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Characterization of novel lectins from Burkholderia pseudomallei and Chromobacterium violaceum with seven-bladed beta-propeller fold.
Int.J.Biol.Macromol., 2019
6GXS
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CRYSTAL STRUCTURE OF CV39L LECTIN FROM CHROMOBACTERIUM VIOLACEUM AT 1.8 A RESOLUTION
Descriptor:CV39L lectin, SULFATE ION, 1,2-ETHANEDIOL, ...
Authors:Sykorova, P., Novotna, J., Demo, G., Pompidor, G., Dubska, E., Komarek, J., Fujdiarova, E., Haronikova, L., Varrot, A., Imberty, A., Shilova, N., Bovin, N., Pokorna, M., Wimmerova, M.
Deposit date:2018-06-27
Release date:2019-12-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Characterization of novel lectins from Burkholderia pseudomallei and Chromobacterium violaceum with seven-bladed beta-propeller fold
Int.J.Biol.Macromol., 2019
5C9L
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CRYSTAL STRUCTURE OF NATIVE PLL LECTIN FROM PHOTORHABDUS LUMINESCENS AT 1.65 A RESOLUTION
Descriptor:PLL lectin, MERCURY (II) ION, CALCIUM ION, ...
Authors:Kumar, A., Sykorova, P., Demo, G., Dobes, P., Hyrsl, P., Wimmerova, M.
Deposit date:2015-06-27
Release date:2016-10-19
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:A Novel Fucose-binding Lectin from Photorhabdus luminescens (PLL) with an Unusual Heptabladed beta-Propeller Tetrameric Structure.
J.Biol.Chem., 291, 2016
5C9O
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CRYSTAL STRUCTURE OF RECOMBINANT PLL LECTIN FROM PHOTORHABDUS LUMINESCENS AT 1.5 A RESOLUTION
Descriptor:PLL lectin, GLYCEROL
Authors:Kumar, A., Sykorova, P., Demo, G., Dobes, P., Hyrsl, P., Wimmerova, M.
Deposit date:2015-06-28
Release date:2016-10-19
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A Novel Fucose-binding Lectin from Photorhabdus luminescens (PLL) with an Unusual Heptabladed beta-Propeller Tetrameric Structure.
J.Biol.Chem., 291, 2016
5C9P
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CRYSTAL STRUCTURE OF RECOMBINANT PLL LECTIN COMPLEXED WITH L-FUCOSE FROM PHOTORHABDUS LUMINESCENS AT 1.75 A RESOLUTION
Descriptor:PLL lectin, ALPHA-L-FUCOSE, GLYCEROL
Authors:Kumar, A., Sykorova, P., Demo, G., Dobes, P., Hyrsl, P., Wimmerova, M.
Deposit date:2015-06-28
Release date:2016-10-19
Last modified:2016-12-07
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A Novel Fucose-binding Lectin from Photorhabdus luminescens (PLL) with an Unusual Heptabladed beta-Propeller Tetrameric Structure.
J.Biol.Chem., 291, 2016
5LNM
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CRYSTAL STRUCTURE OF D1050E MUTANT OF THE RECEIVER DOMAIN OF THE HISTIDINE KINASE CKI1 FROM ARABIDOPSIS THALIANA
Descriptor:Histidine kinase CKI1
Authors:Otrusinova, O., Demo, G., Kaderavek, P., Jansen, S., Jasenakova, Z., Pekarova, B., Janda, L., Wimmerova, M., Hejatko, J., Zidek, L.
Deposit date:2016-08-05
Release date:2017-09-13
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Conformational dynamics are a key factor in signaling mediated by the receiver domain of a sensor histidine kinase from Arabidopsis thaliana.
J. Biol. Chem., 292, 2017
5LNN
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CRYSTAL STRUCTURE OF D1050A MUTANT OF THE RECEIVER DOMAIN OF THE HISTIDINE KINASE CKI1 FROM ARABIDOPSIS THALIANA
Descriptor:Histidine kinase CKI1
Authors:Otrusinova, O., Demo, G., Kaderavek, P., Jansen, S., Jasenakova, Z., Pekarova, B., Janda, L., Wimmerova, M., Hejatko, J., Zidek, L.
Deposit date:2016-08-05
Release date:2017-09-13
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Conformational dynamics are a key factor in signaling mediated by the receiver domain of a sensor histidine kinase from Arabidopsis thaliana.
J. Biol. Chem., 292, 2017
5N2N
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CRYSTAL STRUCTURE OF THE RECEIVER DOMAIN OF THE HISTIDINE KINASE CKI1 FROM ARABIDOPSIS THALIANA COMPLEXED WITH MG2+ AND BEF3-
Descriptor:Histidine kinase CKI1, MAGNESIUM ION, BERYLLIUM TRIFLUORIDE ION
Authors:Otrusinova, O., Demo, G., Padrta, P., Jasenakova, Z., Pekarova, B., Gelova, Z., Szmitkowska, A., Kaderavek, P., Jansen, S., Zachrdla, M., Klumpler, T., Marek, J., Hritz, J., Janda, L., Iwai, H., Wimmerova, M., Hejatko, J., Zidek, L.
Deposit date:2017-02-08
Release date:2017-09-13
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Conformational dynamics are a key factor in signaling mediated by the receiver domain of a sensor histidine kinase from Arabidopsis thaliana.
J. Biol. Chem., 292, 2017
5UYK
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70S RIBOSOME BOUND WITH COGNATE TERNARY COMPLEX NOT BASE-PAIRED TO A SITE CODON (STRUCTURE I)
Descriptor:50S ribosomal protein L2, 50S ribosomal protein L3, 50S ribosomal protein L4, ...
Authors:Loveland, A.B., Demo, G., Grigorieff, N., Korostelev, A.A.
Deposit date:2017-02-24
Release date:2017-06-07
Last modified:2019-11-20
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Ensemble cryo-EM elucidates the mechanism of translation fidelity
Nature, 546, 2017
5UYL
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70S RIBOSOME BOUND WITH COGNATE TERNARY COMPLEX BASE-PAIRED TO A SITE CODON (STRUCTURE II)
Descriptor:50S ribosomal protein L2, 50S ribosomal protein L3, 50S ribosomal protein L4, ...
Authors:Loveland, A.B., Demo, G., Grigorieff, N., Korostelev, A.A.
Deposit date:2017-02-24
Release date:2017-06-14
Last modified:2019-11-20
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Ensemble cryo-EM elucidates the mechanism of translation fidelity.
Nature, 546, 2017
5UYM
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70S RIBOSOME BOUND WITH COGNATE TERNARY COMPLEX BASE-PAIRED TO A SITE CODON, CLOSED 30S (STRUCTURE III)
Descriptor:50S ribosomal protein L2, 50S ribosomal protein L3, 50S ribosomal protein L4, ...
Authors:Loveland, A.B., Demo, G., Grigorieff, N., Korostelev, A.A.
Deposit date:2017-02-24
Release date:2017-06-07
Last modified:2019-11-20
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Ensemble cryo-EM elucidates the mechanism of translation fidelity
Nature, 546, 2017
5UYN
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70S RIBOSOME BOUND WITH NEAR-COGNATE TERNARY COMPLEX NOT BASE-PAIRED TO A SITE CODON (STRUCTURE I-NC)
Descriptor:50S ribosomal protein L2, 50S ribosomal protein L3, 50S ribosomal protein L4, ...
Authors:Loveland, A.B., Demo, G., Grigorieff, N., Korostelev, A.A.
Deposit date:2017-02-24
Release date:2017-06-07
Last modified:2019-11-20
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Ensemble cryo-EM elucidates the mechanism of translation fidelity
Nature, 546, 2017
5UYP
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70S RIBOSOME BOUND WITH NEAR-COGNATE TERNARY COMPLEX BASE-PAIRED TO A SITE CODON, OPEN 30S (STRUCTURE II-NC)
Descriptor:50S ribosomal protein L2, 50S ribosomal protein L3, 50S ribosomal protein L4, ...
Authors:Loveland, A.B., Demo, G., Grigorieff, N., Korostelev, A.A.
Deposit date:2017-02-24
Release date:2017-06-07
Last modified:2019-11-20
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Ensemble cryo-EM elucidates the mechanism of translation fidelity
Nature, 546, 2017
5UYQ
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70S RIBOSOME BOUND WITH NEAR-COGNATE TERNARY COMPLEX BASE-PAIRED TO A SITE CODON, CLOSED 30S (STRUCTURE III-NC)
Descriptor:50S ribosomal protein L2, 50S ribosomal protein L3, 50S ribosomal protein L4, ...
Authors:Loveland, A.B., Demo, G., Grigorieff, N., Korostelev, A.A.
Deposit date:2017-02-24
Release date:2017-06-07
Last modified:2019-11-20
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Ensemble cryo-EM elucidates the mechanism of translation fidelity
Nature, 546, 2017
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