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4QM7
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BU of 4qm7 by Molmil
Structure of bacterial polynucleotide kinase bound to GTP and pDNA
Descriptor: DNA, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Das, U, Wang, L.K, Smith, P, Shuman, S.
Deposit date:2014-06-15
Release date:2014-10-08
Last modified:2015-02-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structures of bacterial polynucleotide kinase in a michaelis complex with nucleoside triphosphate (NTP)-Mg2+ and 5'-OH RNA and a mixed substrate-product complex with NTP-Mg2+ and a 5'-phosphorylated oligonucleotide.
J.Bacteriol., 196, 2014
4QM6
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BU of 4qm6 by Molmil
Structure of bacterial polynucleotide kinase bound to GTP and RNA
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Metallophosphoesterase, ...
Authors:Das, U, Wang, L.K, Smith, P, Shuman, S.
Deposit date:2014-06-15
Release date:2014-10-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structures of bacterial polynucleotide kinase in a michaelis complex with nucleoside triphosphate (NTP)-Mg2+ and 5'-OH RNA and a mixed substrate-product complex with NTP-Mg2+ and a 5'-phosphorylated oligonucleotide.
J.Bacteriol., 196, 2014
6ADD
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BU of 6add by Molmil
The crystal structure of Rv2747 from Mycobacterium tuberculosis in complex with CoA and NLQ
Descriptor: Amino-acid acetyltransferase, COENZYME A, N~2~-ACETYL-L-GLUTAMINE
Authors:Das, U, Singh, E, Pal, R.K, Tiruttani Subhramanyam, U.K, Gourinath, S, Srinivasan, A.
Deposit date:2018-07-31
Release date:2018-12-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Structural insights into the substrate binding mechanism of novel ArgA from Mycobacterium tuberculosis
Int. J. Biol. Macromol., 125, 2019
4JT2
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BU of 4jt2 by Molmil
Structure of Clostridium thermocellum polynucleotide kinase bound to CTP
Descriptor: CYTIDINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Metallophosphoesterase
Authors:Das, U, Wang, L.K, Smith, P, Shuman, S.
Deposit date:2013-03-22
Release date:2013-08-28
Last modified:2013-12-18
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Structural and biochemical analysis of the phosphate donor specificity of the polynucleotide kinase component of the bacterial pnkphen1 RNA repair system.
Biochemistry, 52, 2013
4JT4
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BU of 4jt4 by Molmil
Structure of Clostridium thermocellum polynucleotide kinase bound to dATP
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, MAGNESIUM ION, Metallophosphoesterase, ...
Authors:Das, U, Wang, L.K, Smith, P, Shuman, S.
Deposit date:2013-03-22
Release date:2013-08-28
Last modified:2013-12-18
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structural and biochemical analysis of the phosphate donor specificity of the polynucleotide kinase component of the bacterial pnkphen1 RNA repair system.
Biochemistry, 52, 2013
4JSY
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BU of 4jsy by Molmil
Structure of Clostridium thermocellum polynucleotide kinase bound to GTP
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Metallophosphoesterase
Authors:Das, U, Wang, L.K, Smith, P, Shuman, S.
Deposit date:2013-03-22
Release date:2013-08-28
Last modified:2013-12-18
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Structural and biochemical analysis of the phosphate donor specificity of the polynucleotide kinase component of the bacterial pnkphen1 RNA repair system.
Biochemistry, 52, 2013
4JST
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BU of 4jst by Molmil
Structure of Clostridium thermocellum polynucleotide kinase bound to UTP
Descriptor: MAGNESIUM ION, Metallophosphoesterase, SODIUM ION, ...
Authors:Das, U, Wang, L.K, Smith, P, Shuman, S.
Deposit date:2013-03-22
Release date:2013-08-28
Last modified:2013-12-18
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Structural and biochemical analysis of the phosphate donor specificity of the polynucleotide kinase component of the bacterial pnkphen1 RNA repair system.
Biochemistry, 52, 2013
3TA5
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BU of 3ta5 by Molmil
Cobalt bound structure of an archaeal member of the LigD 3'-phosphoesterase DNA repair enzyme family
Descriptor: ATP-dependent DNA ligase, N-terminal domain protein, COBALT (II) ION, ...
Authors:Das, U, Smith, P, Shuman, S.
Deposit date:2011-08-03
Release date:2011-10-12
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Structural insights to the metal specificity of an archaeal member of the LigD 3'-phosphoesterase DNA repair enzyme family.
Nucleic Acids Res., 40, 2012
3TA7
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BU of 3ta7 by Molmil
Zinc bound structure of an archaeal member of the LigD 3'-phosphoesterase DNA repair enzyme family
Descriptor: ATP-dependent DNA ligase, N-terminal domain protein, DI(HYDROXYETHYL)ETHER, ...
Authors:Das, U, Smith, P, Shuman, S.
Deposit date:2011-08-03
Release date:2011-10-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Structural insights to the metal specificity of an archaeal member of the LigD 3'-phosphoesterase DNA repair enzyme family.
Nucleic Acids Res., 40, 2012
4CHG
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BU of 4chg by Molmil
Crystal structure of VapBC15 complex from Mycobacterium tuberculosis
Descriptor: ANTITOXIN VAPB15, MAGNESIUM ION, MANGANESE (II) ION, ...
Authors:Das, U, Pogenberg, V, Tiruttani Subhramanyam, U.K, Wilmanns, M, Srinivasan, A, Gourinath, S.
Deposit date:2013-12-02
Release date:2014-11-12
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of the Vapbc-15 Complex from Mycobacterium Tuberculosis Reveals a Two-Metal Ion Dependent Pin-Domain Ribonuclease And a Variable Mode of Toxin-Antitoxin Assembly.
J.Struct.Biol., 188, 2014
5YO2
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BU of 5yo2 by Molmil
The crystal structure of Rv2747 from Mycobacterium tuberculosis in complex with Acetyl CoA and L-Arginine
Descriptor: ACETYL COENZYME *A, ARGININE, Amino-acid acetyltransferase
Authors:Singh, E, Tiruttani Subhramanyam, U.K, Pal, R.K, Srinivasan, A, Gourinath, S, Das, U.
Deposit date:2017-10-26
Release date:2018-11-07
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.997 Å)
Cite:Structural insights into the substrate binding mechanism of novel ArgA from Mycobacterium tuberculosis
Int. J. Biol. Macromol., 125, 2019
4MDE
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BU of 4mde by Molmil
Structure of bacterial polynucleotide kinase product complex bound to GDP and DNA
Descriptor: DNA (5'-D(P*CP*CP*TP*GP*T)-3'), GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Shuman, S, Das, U, Wang, L.K, Smith, P, Jacewicz, A.
Deposit date:2013-08-22
Release date:2013-11-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structures of bacterial polynucleotide kinase in a Michaelis complex with GTP*Mg2+ and 5'-OH oligonucleotide and a product complex with GDP*Mg2+ and 5'-PO4 oligonucleotide reveal a mechanism of general acid-base catalysis and the determinants of phosphoacceptor recognition.
Nucleic Acids Res., 42, 2014
4MDF
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BU of 4mdf by Molmil
Structure of bacterial polynucleotide kinase Michaelis complex bound to GTP and DNA
Descriptor: CITRIC ACID, DNA (5'-D(*CP*CP*TP*GP*T)-3'), GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Shuman, S, Das, U, Wang, L.K, Smith, P, Jacewicz, A.
Deposit date:2013-08-22
Release date:2013-11-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.727 Å)
Cite:Structures of bacterial polynucleotide kinase in a Michaelis complex with GTP*Mg2+ and 5'-OH oligonucleotide and a product complex with GDP*Mg2+ and 5'-PO4 oligonucleotide reveal a mechanism of general acid-base catalysis and the determinants of phosphoacceptor recognition.
Nucleic Acids Res., 42, 2014
8HCJ
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BU of 8hcj by Molmil
Structure of GH43 family enzyme, Xylan 1, 4 Beta- xylosidase from pseudopedobacter saltans
Descriptor: CALCIUM ION, Xylan 1,4-beta-xylosidase
Authors:Vishwakarma, P, Sachdeva, E, Goyal, A, Ethayathulla, A.S, Das, U, Kaur, P.
Deposit date:2022-11-01
Release date:2023-11-15
Method:X-RAY DIFFRACTION (2.566 Å)
Cite:Structure of GH43 family enzyme, Xylan 1, 4 Beta- xylosidase from pseudopedobacter saltans
To Be Published
7WCJ
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BU of 7wcj by Molmil
Crystal structure LpqY from Mycobacterium tuberculosis
Descriptor: SULFATE ION, Trehalose-binding lipoprotein LpqY
Authors:Sharma, D, Das, U.
Deposit date:2021-12-20
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Structural analysis of LpqY, a substrate-binding protein from the SugABC transporter of Mycobacterium tuberculosis, provides insights into its trehalose specificity.
Acta Crystallogr D Struct Biol, 78, 2022
7WDA
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BU of 7wda by Molmil
Crystal structure LpqY in complex with Trehalose from Mycobacterium tuberculosis
Descriptor: SULFATE ION, Trehalose-binding lipoprotein LpqY, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose
Authors:Sharma, D, Das, U.
Deposit date:2021-12-21
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Structural analysis of LpqY, a substrate-binding protein from the SugABC transporter of Mycobacterium tuberculosis, provides insights into its trehalose specificity.
Acta Crystallogr D Struct Biol, 78, 2022
2DPE
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BU of 2dpe by Molmil
Crystal structure of a secretory 40KDA glycoprotein from sheep at 2.0A resolution
Descriptor: Chitinase-3-like protein 1, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Srivastava, D.B, Ethayathulla, A.S, Kumar, J, Singh, N, Sharma, S, Das, U, Srinivasan, A, Singh, T.P.
Deposit date:2006-05-11
Release date:2006-05-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystal structure of a secretory signalling glycoprotein from sheep at 2.0A resolution
J.Struct.Biol., 156, 2006
7WT6
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BU of 7wt6 by Molmil
Crystal structure of full-length peptidyl-tRNA hydrolase from Mycobacterium tuberculosis
Descriptor: Peptidyl-tRNA hydrolase
Authors:Kulandaisamy, R, Das, U, Inampudi, K.K.
Deposit date:2022-02-04
Release date:2022-04-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystal structure of full-length peptidyl-tRNA hydrolase from Mycobacterium tuberculosis
To Be Published
4GP7
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BU of 4gp7 by Molmil
Polynucleotide kinase
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CITRIC ACID, MAGNESIUM ION, ...
Authors:Wang, L.K, Das, U, Smith, P, Shuman, S.
Deposit date:2012-08-20
Release date:2012-11-14
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and mechanism of the polynucleotide kinase component of the bacterial Pnkp-Hen1 RNA repair system.
Rna, 18, 2012
4GP6
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BU of 4gp6 by Molmil
Polynucleotide kinase
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Metallophosphoesterase
Authors:Wang, L.K, Das, U, Smith, P, Shuman, S.
Deposit date:2012-08-20
Release date:2012-11-14
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure and mechanism of the polynucleotide kinase component of the bacterial Pnkp-Hen1 RNA repair system.
Rna, 18, 2012
3P43
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BU of 3p43 by Molmil
Structure and Activities of Archaeal Members of the LigD 3' Phosphoesterase DNA Repair Enzyme Superfamily
Descriptor: CHLORIDE ION, MANGANESE (II) ION, PHOSPHATE ION, ...
Authors:Smith, P, Nair, P.A, Das, U, Shuman, S.
Deposit date:2010-10-05
Release date:2011-01-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures and activities of archaeal members of the LigD 3'-phosphoesterase DNA repair enzyme superfamily.
Nucleic Acids Res., 39, 2011
3P4H
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BU of 3p4h by Molmil
Structures of archaeal members of the LigD 3'-phosphoesterase DNA repair enzyme superfamily
Descriptor: ATP-dependent DNA ligase, N-terminal domain protein, DI(HYDROXYETHYL)ETHER, ...
Authors:Smith, P, Nair, P.A, Das, U, Zhu, H, Shuman, S.
Deposit date:2010-10-06
Release date:2011-01-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Structures and activities of archaeal members of the LigD 3'-phosphoesterase DNA repair enzyme superfamily.
Nucleic Acids Res., 39, 2011

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PDB entries from 2024-03-27

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