Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8TJT
DownloadVisualize
BU of 8tjt by Molmil
The Fab fragment of an anti-glucagon receptor (GCGR) antibody
Descriptor: anti-GCGR Fab heavy chain, anti-GCGR Fab light chain
Authors:Dai, J, Carter, P.J, Sudhamsu, J, Kung, J.
Deposit date:2023-07-24
Release date:2024-02-14
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Variable domain mutational analysis to probe the molecular mechanisms of high viscosity of an IgG 1 antibody.
Mabs, 16, 2024
6X0Q
DownloadVisualize
BU of 6x0q by Molmil
A Circular Permutant of the Tobacco Mosaic Virus (TMV) mutant Q101H coordinated with heme
Descriptor: Capsid protein Circular Permutant, PROTOPORPHYRIN IX CONTAINING FE
Authors:Dai, J, Knott, G.J, Francis, M.B.
Deposit date:2020-05-17
Release date:2020-12-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3 Å)
Cite:Protein-Embedded Metalloporphyrin Arrays Templated by Circularly Permuted Tobacco Mosaic Virus Coat Proteins.
Acs Nano, 15, 2021
6X0R
DownloadVisualize
BU of 6x0r by Molmil
A Circular Permutant of the Tobacco Mosaic Virus (TMV) mutant Q101H
Descriptor: Capsid protein Circular Permutant
Authors:Dai, J, Knott, G.J, Francis, M.B.
Deposit date:2020-05-17
Release date:2020-12-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3 Å)
Cite:Protein-Embedded Metalloporphyrin Arrays Templated by Circularly Permuted Tobacco Mosaic Virus Coat Proteins.
Acs Nano, 15, 2021
6RMN
DownloadVisualize
BU of 6rmn by Molmil
DNA mismatch repair proteins MLH1 and MLH3
Descriptor: DNA mismatch repair protein MLH1, DNA mismatch repair protein MLH3, ZINC ION
Authors:Dai, J, Chervy, P, Legrand, P, Ropars, V, Charbonnier, J.B.
Deposit date:2019-05-07
Release date:2021-05-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Molecular basis of the dual role of the Mlh1-Mlh3 endonuclease in MMR and in meiotic crossover formation.
Proc.Natl.Acad.Sci.USA, 118, 2021
6SHX
DownloadVisualize
BU of 6shx by Molmil
DNA mismatch repair proteins MLH1 and MLH3
Descriptor: DNA mismatch repair protein MLH1, DNA mismatch repair protein MLH3, ZINC ION
Authors:Dai, J, Chervy, P, Legrand, P, Ropars, V, Charbonnier, J.B.
Deposit date:2019-08-08
Release date:2021-05-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular basis of the dual role of the Mlh1-Mlh3 endonuclease in MMR and in meiotic crossover formation.
Proc.Natl.Acad.Sci.USA, 118, 2021
6SNS
DownloadVisualize
BU of 6sns by Molmil
DNA mismatch repair proteins MLH1 and MLH3
Descriptor: DNA mismatch repair protein MLH1, DNA mismatch repair protein MLH3, ZINC ION
Authors:Dai, J, Chervy, P, Legrand, P, Ropars, V, Charbonnier, J.B.
Deposit date:2019-08-27
Release date:2021-05-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Molecular basis of the dual role of the Mlh1-Mlh3 endonuclease in MMR and in meiotic crossover formation.
Proc.Natl.Acad.Sci.USA, 118, 2021
6SNV
DownloadVisualize
BU of 6snv by Molmil
DNA mismatch repair proteins MLH1 and MLH3
Descriptor: DNA mismatch repair protein MLH1, DNA mismatch repair protein MLH3, ZINC ION
Authors:Dai, J, Chervy, P, Legrand, P, Ropars, V, Charbonnier, J.B.
Deposit date:2019-08-27
Release date:2021-05-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular basis of the dual role of the Mlh1-Mlh3 endonuclease in MMR and in meiotic crossover formation.
Proc.Natl.Acad.Sci.USA, 118, 2021
8EAW
DownloadVisualize
BU of 8eaw by Molmil
An asymmetric disk assembly formed by tandem dimers of the tobacco mosaic viral capsid protein (TMV)
Descriptor: Capsid protein
Authors:Dai, J, Pereira, J.H, Adams, P.D, Francis, M.B.
Deposit date:2022-08-29
Release date:2023-03-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A Membrane-Associated Light-Harvesting Model is Enabled by Functionalized Assemblies of Gene-Doubled TMV Proteins
Small, n/a, 2023
1X95
DownloadVisualize
BU of 1x95 by Molmil
Solution structure of the DNA-hexamer ATGCAT complexed with DNA Bis-intercalating Anticancer Drug XR5944 (MLN944)
Descriptor: 1-METHYL-9-[12-(9-METHYLPHENAZIN-10-IUM-1-YL)-12-OXO-2,11-DIAZA-5,8-DIAZONIADODEC-1-ANOYL]PHENAZIN-10-IUM, 5'-D(*AP*TP*GP*CP*AP*T)-3'
Authors:Dai, J, Punchihewa, C, Mistry, P, Ooi, A.T, Yang, D.
Deposit date:2004-08-19
Release date:2004-09-28
Last modified:2014-09-17
Method:SOLUTION NMR
Cite:Novel DNA bis-intercalation by MLN944, a potent clinical bisphenazine anticancer drug.
J.Biol.Chem., 279, 2004
1S18
DownloadVisualize
BU of 1s18 by Molmil
Structure and protein design of human apyrase
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, CALCIUM ION, ...
Authors:Dai, J, Liu, J, Deng, Y, Smith, T.M, Lu, M.
Deposit date:2004-01-05
Release date:2004-03-16
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure and protein design of a human platelet function inhibitor.
Cell(Cambridge,Mass.), 116, 2004
1S1D
DownloadVisualize
BU of 1s1d by Molmil
Structure and protein design of human apyrase
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, CALCIUM ION, ...
Authors:Dai, J, Liu, J, Deng, Y, Smith, T.M, Lu, M.
Deposit date:2004-01-06
Release date:2004-03-16
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure and protein design of a human platelet function inhibitor.
Cell(Cambridge,Mass.), 116, 2004
2F8U
DownloadVisualize
BU of 2f8u by Molmil
G-quadruplex structure formed in human Bcl-2 promoter, hybrid form
Descriptor: 5'-D(*GP*GP*GP*CP*GP*CP*GP*GP*GP*AP*GP*GP*AP*AP*TP*TP*GP*GP*GP*CP*GP*GP*G)-3'
Authors:Dai, J, Chen, D, Carver, M, Yang, D.
Deposit date:2005-12-03
Release date:2006-11-07
Last modified:2014-09-17
Method:SOLUTION NMR
Cite:NMR solution structure of the major G-quadruplex structure formed in the human BCL2 promoter region.
Nucleic Acids Res., 34, 2006
2HY9
DownloadVisualize
BU of 2hy9 by Molmil
Human telomere DNA quadruplex structure in K+ solution hybrid-1 form
Descriptor: DNA (26-MER)
Authors:Dai, J, Punchihewa, C, Jones, R.A, Hurley, L, Yang, D.
Deposit date:2006-08-04
Release date:2007-04-10
Last modified:2014-09-17
Method:SOLUTION NMR
Cite:Structure of the intramolecular human telomeric G-quadruplex in potassium solution: a novel adenine triple formation.
Nucleic Acids Res., 35, 2007
2JPZ
DownloadVisualize
BU of 2jpz by Molmil
Human telomere DNA quadruplex structure in K+ solution hybrid-2 form
Descriptor: DNA (26-MER)
Authors:Dai, J, Carver, M, Punchihewa, C, Jones, R, Yang, D.
Deposit date:2007-05-25
Release date:2007-12-04
Last modified:2014-10-01
Method:SOLUTION NMR
Cite:Structure of the Hybrid-2 type intramolecular human telomeric G-quadruplex in K+ solution: insights into structure polymorphism of the human telomeric sequence
Nucleic Acids Res., 35, 2007
2L7V
DownloadVisualize
BU of 2l7v by Molmil
Quindoline/G-quadruplex complex
Descriptor: DNA (5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3'), N,N-diethyl-N'-(10H-indolo[3,2-b]quinolin-11-yl)ethane-1,2-diamine, POTASSIUM ION
Authors:Dai, J, Carver, M, Mathad, R, Yang, D.
Deposit date:2010-12-23
Release date:2011-11-09
Last modified:2011-11-16
Method:SOLUTION NMR
Cite:Solution Structure of a 2:1 Quindoline-c-MYC G-Quadruplex: Insights into G-Quadruplex-Interactive Small Molecule Drug Design.
J.Am.Chem.Soc., 133, 2011
7DHP
DownloadVisualize
BU of 7dhp by Molmil
Crystal structure of MazF from Deinococcus radiodurans
Descriptor: Endoribonuclease MazF, SULFATE ION
Authors:Zhao, Y, Dai, J.
Deposit date:2020-11-17
Release date:2021-03-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:MazEF Toxin-Antitoxin System-Mediated DNA Damage Stress Response in Deinococcus radiodurans.
Front Genet, 12, 2021
4QQV
DownloadVisualize
BU of 4qqv by Molmil
Extracellular domains of mouse IL-3 beta receptor
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Interleukin-3 receptor class 2 subunit beta
Authors:Jackson, C.J, Young, I.G, Murphy, J.M, Carr, P.D, Ewens, C.L, Dai, J, Ollis, D.L.
Deposit date:2014-06-30
Release date:2014-09-03
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Crystal structure of the mouse interleukin-3 beta-receptor: insights into interleukin-3 binding and receptor activation.
Biochem.J., 463, 2014
1JCC
DownloadVisualize
BU of 1jcc by Molmil
Crystal Structure of a Novel Alanine-Zipper Trimer at 1.7 A Resolution, V13A,L16A,V20A,L23A,V27A,M30A,V34A mutations
Descriptor: MAJOR OUTER MEMBRANE LIPOPROTEIN, ZINC ION
Authors:Liu, J, Dai, J, Lu, M.
Deposit date:2001-06-08
Release date:2003-06-17
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Zinc-Mediated Helix Capping in A Triple-Helical Protein
Biochemistry, 42, 2003
1Z4O
DownloadVisualize
BU of 1z4o by Molmil
Structure of beta-phosphoglucomutase with inhibitor bound alpha-galactose 1-phosphate
Descriptor: 1-O-phosphono-alpha-D-galactopyranose, Beta-phosphoglucomutase, MAGNESIUM ION
Authors:Tremblay, L.W, Zhang, G, Dai, J, Dunaway-Mariano, D, Allen, K.N.
Deposit date:2005-03-16
Release date:2005-04-19
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Chemical Confirmation of a Pentavalent Phosphorane in Complex with beta-Phosphoglucomutase
J.Am.Chem.Soc., 127, 2005
1Z4N
DownloadVisualize
BU of 1z4n by Molmil
Structure of beta-phosphoglucomutase with inhibitor bound alpha-galactose 1-phosphate cocrystallized with Fluoride
Descriptor: 1-O-phosphono-alpha-D-galactopyranose, Beta-phosphoglucomutase, MAGNESIUM ION
Authors:Tremblay, L.W, Zhang, G, Dai, J, Dunaway-Mariano, D, Allen, K.N.
Deposit date:2005-03-16
Release date:2005-04-19
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Chemical Confirmation of a Pentavalent Phosphorane in Complex with beta-Phosphoglucomutase
J.Am.Chem.Soc., 127, 2005
1ZOL
DownloadVisualize
BU of 1zol by Molmil
native beta-PGM
Descriptor: MAGNESIUM ION, beta-phosphoglucomutase
Authors:Zhang, G, Tremblay, L.W, Dai, J, Wang, L, Dunaway-Mariano, D, Allen, K.N.
Deposit date:2005-05-13
Release date:2005-08-30
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Catalytic cycling in beta-phosphoglucomutase: a kinetic and structural analysis
Biochemistry, 44, 2005
1SWV
DownloadVisualize
BU of 1swv by Molmil
Crystal structure of the D12A mutant of phosphonoacetaldehyde hydrolase complexed with magnesium
Descriptor: MAGNESIUM ION, phosphonoacetaldehyde hydrolase
Authors:Zhang, G, Morais, M.C, Dai, J, Zhang, W, Dunaway-Mariano, D, Allen, K.N.
Deposit date:2004-03-30
Release date:2004-10-05
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Investigation of metal ion binding in phosphonoacetaldehyde hydrolase identifies sequence markers for metal-activated enzymes of the HAD enzyme superfamily
Biochemistry, 43, 2004
1SWW
DownloadVisualize
BU of 1sww by Molmil
Crystal structure of the phosphonoacetaldehyde hydrolase D12A mutant complexed with magnesium and substrate phosphonoacetaldehyde
Descriptor: MAGNESIUM ION, PHOSPHONOACETALDEHYDE, phosphonoacetaldehyde hydrolase
Authors:Zhang, G, Morais, M.C, Dai, J, Zhang, W, Dunaway-Mariano, D, Allen, K.N.
Deposit date:2004-03-30
Release date:2004-10-05
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Investigation of metal ion binding in phosphonoacetaldehyde hydrolase identifies sequence markers for metal-activated enzymes of the HAD enzyme superfamily
Biochemistry, 43, 2004
1XAV
DownloadVisualize
BU of 1xav by Molmil
Major G-quadruplex structure formed in human c-MYC promoter, a monomeric parallel-stranded quadruplex
Descriptor: 5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3', POTASSIUM ION
Authors:Ambrus, A, Chen, D, Dai, J, Jones, R.A, Yang, D.
Deposit date:2004-08-26
Release date:2005-02-01
Last modified:2014-09-17
Method:SOLUTION NMR
Cite:Solution structure of the biologically relevant G-Quadruplex element in the human c-MYC promoter. Implications for G-quadruplex stabilization.
Biochemistry, 44, 2005
2MC7
DownloadVisualize
BU of 2mc7 by Molmil
Structure of Salmonella MgtR
Descriptor: Regulatory peptide
Authors:Jean-Francois, F, Dai, J, Yu, L, Myrick, A, Rubin, E, Fajer, P, Song, L, Zhou, H, Cross, T.
Deposit date:2013-08-15
Release date:2013-10-30
Last modified:2014-01-22
Method:SOLID-STATE NMR
Cite:Binding of MgtR, a Salmonella Transmembrane Regulatory Peptide, to MgtC, a Mycobacterium tuberculosis Virulence Factor: A Structural Study.
J.Mol.Biol., 426, 2014

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon