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2ETL
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BU of 2etl by Molmil
Crystal Structure of Ubiquitin Carboxy-terminal Hydrolase L1 (UCH-L1)
Descriptor: CHLORIDE ION, Ubiquitin carboxyl-terminal hydrolase isozyme L1
Authors:Das, C, Hoang, Q.Q, Kreinbring, C.A, Luchansky, S.J, Meray, R.K, Ray, S.S, Lansbury, P.T, Ringe, D, Petsko, G.A.
Deposit date:2005-10-27
Release date:2006-03-28
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for conformational plasticity of the Parkinson's disease-associated ubiquitin hydrolase UCH-L1.
Proc.Natl.Acad.Sci.USA, 103, 2006
6MEP
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BU of 6mep by Molmil
Crystal structure of the catalytic domain of the proto-oncogene tyrosine-protein kinase MER in complex with inhibitor UNC3437
Descriptor: CHLORIDE ION, MAGNESIUM ION, Tyrosine-protein kinase Mer, ...
Authors:Da, C, Zhang, D, Stashko, M.A, Cheng, A, Hunter, D, Norris-Drouin, J, Graves, L, Machius, M, Miley, M.J, DeRyckere, D, Earp, H.S, Graham, D.K, Frye, S.V, Wang, X, Kireev, D.
Deposit date:2018-09-06
Release date:2019-09-11
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.893 Å)
Cite:Data-Driven Construction of Antitumor Agents with Controlled Polypharmacology.
J.Am.Chem.Soc., 141, 2019
3RII
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BU of 3rii by Molmil
Crystal structure of the catalytic domain of UCHL5, a proteasome-associated human deubiquitinating enzyme, reveals an unproductive form of the enzyme
Descriptor: 1,2-ETHANEDIOL, MAGNESIUM ION, Ubiquitin carboxyl-terminal hydrolase isozyme L5
Authors:Das, C.
Deposit date:2011-04-13
Release date:2011-11-09
Last modified:2011-12-14
Method:X-RAY DIFFRACTION (2.0008 Å)
Cite:Crystal structure of the catalytic domain of UCHL5, a proteasome-associated human deubiquitinating enzyme, reveals an unproductive form of the enzyme.
Febs J., 278, 2011
3RIS
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BU of 3ris by Molmil
Crystal structure of the catalytic domain of UCHL5, a proteasome-associated human deubiquitinating enzyme, reveals an unproductive form of the enzyme
Descriptor: GLYCEROL, SULFATE ION, Ubiquitin carboxyl-terminal hydrolase isozyme L5
Authors:Das, C, Permaul, M, Maiti, T.K.
Deposit date:2011-04-14
Release date:2011-11-09
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.398 Å)
Cite:Crystal structure of the catalytic domain of UCHL5, a proteasome-associated human deubiquitinating enzyme, reveals an unproductive form of the enzyme.
Febs J., 278, 2011
4IG7
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BU of 4ig7 by Molmil
Crystal structure of Trichinella spiralis UCH37 bound to Ubiquitin vinyl methyl ester
Descriptor: METHYL 4-AMINOBUTANOATE, Ubiquitin, Ubiquitin C-terminal hydrolase 37
Authors:Das, C, Kim, M.I, Morrow, M.E.
Deposit date:2012-12-16
Release date:2013-05-29
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.996 Å)
Cite:Stabilization of an Unusual Salt Bridge in Ubiquitin by the Extra C‑Terminal Domain of the Proteasome-Associated Deubiquitinase UCH37 as a Mechanism of Its Exo Specificity.
Biochemistry, 52, 2013
3IFW
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BU of 3ifw by Molmil
Crystal structure of the S18Y variant of ubiquitin carboxy terminal hydrolase L1 bound to ubiquitin vinylmethylester.
Descriptor: METHYL 4-AMINOBUTANOATE, Ubiquitin, Ubiquitin carboxyl-terminal hydrolase isozyme L1
Authors:Das, C, Boudreaux, D, Maiti, T.
Deposit date:2009-07-26
Release date:2010-06-16
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Ubiquitin vinyl methyl ester binding orients the misaligned active site of the ubiquitin hydrolase UCHL1 into productive conformation.
Proc.Natl.Acad.Sci.USA, 107, 2010
4OUF
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BU of 4ouf by Molmil
Crystal Structure of CBP bromodomain
Descriptor: 1,2-ETHANEDIOL, CREB-binding protein, DI(HYDROXYETHYL)ETHER
Authors:Roy, S, Das, C, Tyler, J.K, Kutateladze, T.G.
Deposit date:2014-02-17
Release date:2014-03-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Binding of the histone chaperone ASF1 to the CBP bromodomain promotes histone acetylation.
Proc.Natl.Acad.Sci.USA, 111, 2014
8UX2
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BU of 8ux2 by Molmil
Chromobacterium violaceum mono-ADP-ribosyltransferase CteC in complex with NAD+
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, NAD(+)--protein-threonine ADP-ribosyltransferase, ...
Authors:Zhang, Z, Rondon, H, Das, C.
Deposit date:2023-11-08
Release date:2024-01-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Crystal structure of bacterial ubiquitin ADP-ribosyltransferase CteC reveals a substrate-recruiting insertion.
J.Biol.Chem., 300, 2023
4Q3Z
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BU of 4q3z by Molmil
Crystal structure of C. violaceum phenylalanine hydroxylase D139K mutation
Descriptor: COBALT (II) ION, Phenylalanine-4-hydroxylase
Authors:Ronau, J.A, Abu-Omar, M.M, Das, C.
Deposit date:2014-04-12
Release date:2015-02-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:A conserved acidic residue in phenylalanine hydroxylase contributes to cofactor affinity and catalysis.
Biochemistry, 53, 2014
4Q3W
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BU of 4q3w by Molmil
Crystal structure of C. violaceum phenylalanine hydroxylase D139E mutation
Descriptor: 1,2-ETHANEDIOL, COBALT (II) ION, Phenylalanine-4-hydroxylase
Authors:Ronau, J.A, Abu-Omar, M.M, Das, C.
Deposit date:2014-04-12
Release date:2015-02-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:A conserved acidic residue in phenylalanine hydroxylase contributes to cofactor affinity and catalysis.
Biochemistry, 53, 2014
4Q3X
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BU of 4q3x by Molmil
Crystal structure of C. violaceum phenylalanine hydroxylase D139N mutation
Descriptor: COBALT (II) ION, Phenylalanine-4-hydroxylase
Authors:Ronau, J.A, Abu-Omar, M.M, Das, C.
Deposit date:2014-04-12
Release date:2015-02-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:A conserved acidic residue in phenylalanine hydroxylase contributes to cofactor affinity and catalysis.
Biochemistry, 53, 2014
6WTG
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BU of 6wtg by Molmil
SdeA DUB Domain in complex with Ubiquitin
Descriptor: Ubiquitin, Ubiquitinating/deubiquitinating enzyme SdeA
Authors:Kenny, S, Sheedlo, M, Das, C.
Deposit date:2020-05-02
Release date:2021-03-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:Insights into Ubiquitin Product Release in Hydrolysis Catalyzed by the Bacterial Deubiquitinase SdeA.
Biochemistry, 60, 2021
8EFW
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BU of 8efw by Molmil
Structure of SdeA DUB Domain disulfide crosslinked with Ubiquitin
Descriptor: SdeA, Ubiquitin
Authors:Negron Teron, K.N, Das, C.
Deposit date:2022-09-09
Release date:2023-09-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Cocrystallization of ubiquitin-deubiquitinase complexes through disulfide linkage
Acta Crystallogr.,Sect.D, 79, 2023
8EDE
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BU of 8ede by Molmil
Crystal structure of covalent inhibitor 2-chloro-N'-(N-(4-chlorophenyl)-N-methylglycyl)acetohydrazide bound to Ubiquitin C-terminal Hydrolase-L1
Descriptor: 2-[(4-chlorophenyl)-methyl-amino]-~{N}'-ethanoyl-ethanehydrazide, SULFATE ION, Ubiquitin carboxyl-terminal hydrolase isozyme L1
Authors:Patel, R, Imhoff, R, Flaherty, D, Das, C.
Deposit date:2022-09-04
Release date:2023-09-20
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (1.799 Å)
Cite:Covalent Fragment Screening and Optimization Identifies the Chloroacetohydrazide Scaffold as Inhibitors for Ubiquitin C-terminal Hydrolase L1.
J.Med.Chem., 67, 2024
8EFX
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BU of 8efx by Molmil
Structure of OtDUB DUB Domain disulfide crosslinked with Ubiquitin
Descriptor: OtDUB, Ubiquitin
Authors:Negron Teron, K.N, Das, C.
Deposit date:2022-09-09
Release date:2023-09-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Cocrystallization of ubiquitin-deubiquitinase complexes through disulfide linkage
Acta Crystallogr.,Sect.D, 79, 2023
8FEK
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BU of 8fek by Molmil
Crystal structure of PBP cyclase Ulm16
Descriptor: PBP cyclase Ulm16
Authors:Patel, R, Budimir, Z, Parkinson, E, Das, C.
Deposit date:2022-12-06
Release date:2023-11-08
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.058 Å)
Cite:Biocatalytic cyclization of small macrolactams by a penicillin-binding protein-type thioesterase.
Nat.Chem.Biol., 20, 2024
6OAM
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BU of 6oam by Molmil
Crystal Structure of ChlaDUB2 DUB domain
Descriptor: Deubiquitinase and deneddylase Dub2, Ubiquitin
Authors:Hausman, J.M, Das, C.
Deposit date:2019-03-17
Release date:2020-04-22
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.503 Å)
Cite:The Two Deubiquitinating Enzymes fromChlamydia trachomatisHave Distinct Ubiquitin Recognition Properties.
Biochemistry, 59, 2020
6OV1
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BU of 6ov1 by Molmil
Structure of Staphylococcus aureus RNase P protein mutant with defective mRNA degradation activity
Descriptor: Ribonuclease P protein component
Authors:Ha, L, Colquhoun, J, Noinaj, N, Das, C, Dunman, P, Flaherty, D.P.
Deposit date:2019-05-06
Release date:2020-12-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Genetic and biochemical characterization of Staphylococcus aureus RnpA
To Be Published
6P5H
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BU of 6p5h by Molmil
Structure of MavC middle insertion domain
Descriptor: MavC
Authors:Negron Teron, K.I, Puvar, K, Iyer, S, Das, C.
Deposit date:2019-05-30
Release date:2020-05-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Legionella effector MavC targets the Ube2N~Ub conjugate for noncanonical ubiquitination.
Nat Commun, 11, 2020
6P5B
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BU of 6p5b by Molmil
Crystal Structure of MavC in Complex with Ub-UbE2N
Descriptor: MavC, Ubiquitin, Ubiquitin-conjugating enzyme E2 N
Authors:Puvar, K, Iyer, S, Negron Teron, K.I, Das, C.
Deposit date:2019-05-30
Release date:2020-05-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.099 Å)
Cite:Legionella effector MavC targets the Ube2N~Ub conjugate for noncanonical ubiquitination.
Nat Commun, 11, 2020
8DY8
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BU of 8dy8 by Molmil
Crystal structure of the R178Q mutant of ubiquitin carboxy terminal hydrolase L1 (UCH-L1)
Descriptor: MAGNESIUM ION, SULFATE ION, Ubiquitin carboxyl-terminal hydrolase isozyme L1
Authors:Kenny, S, Brown, K.J, Das, C.
Deposit date:2022-08-03
Release date:2023-08-09
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Enhanced catalytic activity of the UCHL1R178Q mutant is due to a more reactive active site
To Be Published
8DMU
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BU of 8dmu by Molmil
Crystal structure of macrodomain CG3568 from Drosophila melanogaster in complex with ADP-ribose
Descriptor: CG3568, CHLORIDE ION, NICKEL (II) ION, ...
Authors:Zhang, Z, Das, C.
Deposit date:2022-07-08
Release date:2023-07-12
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of ADP-ribose-bound Drosophila macrodomain CG3568
To Be Published
7LM3
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BU of 7lm3 by Molmil
Crystal Structure of Thr316Ala mutant of JAMM domain of S. pombe
Descriptor: AMSH-like protease sst2, PHOSPHATE ION, ZINC ION
Authors:Shrestha, R, Das, C.
Deposit date:2021-02-05
Release date:2021-06-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of the Thr316Ala mutant of a yeast JAMM deubiquitinase: implication of active-site loop dynamics in catalysis.
Acta Crystallogr.,Sect.F, 77, 2021
6ULH
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BU of 6ulh by Molmil
Structure of MavC in complex with its substrate in R3 spacegroup
Descriptor: LPG2147 (MavC), Ubiquitin, Ubiquitin-conjugating enzyme E2 N
Authors:Iyer, S, Puvar, K, Das, C.
Deposit date:2019-10-08
Release date:2020-05-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.968 Å)
Cite:Legionella effector MavC targets the Ube2N~Ub conjugate for noncanonical ubiquitination.
Nat Commun, 11, 2020
6UMS
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BU of 6ums by Molmil
Crystal structure of MavC in complex with its substrate mimic in C222(1) space group
Descriptor: MavC, Ubiquitin, Ubiquitin-conjugating enzyme E2 N
Authors:Iyer, S, Puvar, K, Das, C.
Deposit date:2019-10-10
Release date:2020-05-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.344 Å)
Cite:Legionella effector MavC targets the Ube2N~Ub conjugate for noncanonical ubiquitination.
Nat Commun, 11, 2020

 

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