Author results

2CGT
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GROEL-ADP-GP31 COMPLEX
Descriptor:60 KDA GROEL, CAPSID ASSEMBLY PROTEIN GP31
Authors:Clare, D.K., Bakkes, P.J., van Heerikhuizen, H., van der Vies, S.M., Saibil, H.R.
Deposit date:2006-03-09
Release date:2006-03-29
Last modified:2019-10-23
Method:ELECTRON MICROSCOPY (8.2 Å)
Cite:An Expanded Protein Folding Cage in the Groel-Gp31 Complex.
J.Mol.Biol., 358, 2006
2XEA
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4.6 ANGSTROM CRYO-EM RECONSTRUCTION OF TOBACCO MOSAIC VIRUS FROM IMAGES RECORDED AT 300 KEV ON A 4KX4K CCD CAMERA
Descriptor:TOBACCO MOSAIC VIRUS, 5'-(*GP*AP*AP)-3'
Authors:Clare, D.K., Orlova, E.V.
Deposit date:2010-05-12
Release date:2010-06-30
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:4.6 A Cryo-Em Reconstruction of Tobacco Mosaic Virus from Images Recorded at 300 Kev on a 4Kx4K Ccd Camera.
J.Struct.Biol., 171, 2010
4AAQ
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ATP-TRIGGERED MOLECULAR MECHANICS OF THE CHAPERONIN GROEL
Descriptor:60 KDA CHAPERONIN, ADENOSINE-5'-TRIPHOSPHATE, PHOSPHATE ION, ...
Authors:Clare, D.K., Vasishtan, D., Stagg, S., Quispe, J., Farr, G.W., Topf, M., Horwich, A.L., Saibil, H.R.
Deposit date:2011-12-05
Release date:2012-12-12
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (8 Å)
Cite:ATP-Triggered Conformational Changes Delineate Substrate-Binding and -Folding Mechanics of the Groel Chaperonin.
Cell(Cambridge,Mass.), 149, 2012
4AAR
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ATP-TRIGGERED MOLECULAR MECHANICS OF THE CHAPERONIN GROEL
Descriptor:60 KDA CHAPERONIN, ADENOSINE-5'-TRIPHOSPHATE, PHOSPHATE ION, ...
Authors:Clare, D.K., Vasishtan, D., Stagg, S., Quispe, J., Farr, G.W., Topf, M., Horwich, A.L., Saibil, H.R.
Deposit date:2011-12-05
Release date:2012-12-12
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (8 Å)
Cite:ATP-Triggered Conformational Changes Delineate Substrate-Binding and -Folding Mechanics of the Groel Chaperonin.
Cell(Cambridge,Mass.), 149, 2012
4AAS
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ATP-TRIGGERED MOLECULAR MECHANICS OF THE CHAPERONIN GROEL
Descriptor:60 KDA CHAPERONIN, PHOSPHATE ION, MAGNESIUM ION, ...
Authors:Clare, D.K., Vasishtan, D., Stagg, S., Quispe, J., Farr, G.W., Topf, M., Horwich, A.L., Saibil, H.R.
Deposit date:2011-12-05
Release date:2012-12-12
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (8.5 Å)
Cite:ATP-Triggered Conformational Changes Delineate Substrate-Binding and -Folding Mechanics of the Groel Chaperonin.
Cell(Cambridge,Mass.), 149, 2012
4AAU
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ATP-TRIGGERED MOLECULAR MECHANICS OF THE CHAPERONIN GROEL
Descriptor:60 KDA CHAPERONIN, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Clare, D.K., Vasishtan, D., Stagg, S., Quispe, J., Farr, G.W., Topf, M., Horwich, A.L., Saibil, H.R.
Deposit date:2011-12-05
Release date:2012-12-12
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (8.5 Å)
Cite:ATP-Triggered Conformational Changes Delineate Substrate-Binding and -Folding Mechanics of the Groel Chaperonin.
Cell(Cambridge,Mass.), 149, 2012
4AB2
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ATP-TRIGGERED MOLECULAR MECHANICS OF THE CHAPERONIN GROEL
Descriptor:60 KDA CHAPERONIN, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Clare, D.K., Vasishtan, D., Stagg, S., Quispe, J., Farr, G.W., Topf, M., Horwich, A.L., Saibil, H.R.
Deposit date:2011-12-06
Release date:2012-12-12
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (8.5 Å)
Cite:ATP-Triggered Conformational Changes Delineate Substrate-Binding and -Folding Mechanics of the Groel Chaperonin.
Cell(Cambridge,Mass.), 149, 2012
4AB3
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ATP-TRIGGERED MOLECULAR MECHANICS OF THE CHAPERONIN GROEL
Descriptor:60 KDA CHAPERONIN, PHOSPHATE ION, MAGNESIUM ION, ...
Authors:Clare, D.K., Vasishtan, D., Stagg, S., Quispe, J., Farr, G.W., Topf, M., Horwich, A.L., Saibil, H.R.
Deposit date:2011-12-06
Release date:2012-12-12
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (8.5 Å)
Cite:ATP-Triggered Conformational Changes Delineate Substrate-Binding and -Folding Mechanics of the Groel Chaperonin.
Cell(Cambridge,Mass.), 149, 2012
5A79
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NOVEL INTER-SUBUNIT CONTACTS IN BARLEY STRIPE MOSAIC VIRUS REVEALED BY CRYO-EM
Descriptor:CAPSID PROTEIN, RNA
Authors:Clare, D.K., Pechnikova, E., Skurat, E., Makarov, V., Sokolova, O.S., Solovyev, A.G., V Orlova, E.
Deposit date:2015-07-03
Release date:2015-09-02
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Novel Inter-Subunit Contacts in Barley Stripe Mosaic Virus Revealed by Cryo-Electron Microscopy.
Structure, 23, 2015
5A7A
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NOVEL INTER-SUBUNIT CONTACTS IN BARLEY STRIPE MOSAIC VIRUS REVEALED BY CRYO-EM
Descriptor:BARLEY STRIPE MOSAIC VIRUS NARROW, RNA
Authors:Clare, D.K., Pechnikova, E., Skurat, E., Makarov, V., Sokolova, O.S., Solovyev, A.G., V Orlova, E.
Deposit date:2015-07-03
Release date:2015-09-02
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Novel Inter-Subunit Contacts in Barley Stripe Mosaic Virus Revealed by Cryo-Electron Microscopy.
Structure, 23, 2015
2C7C
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FITTED COORDINATES FOR GROEL-ATP7-GROES CRYO-EM COMPLEX (EMD-1180)
Descriptor:60 KDA CHAPERONIN, 10 KDA CHAPERONIN MOLECULE: GROES, PROTEIN CPN10, ...
Authors:Ranson, N.A., Clare, D.K., Farr, G.W., Houldershaw, D., Horwich, A.L., Saibil, H.R.
Deposit date:2005-11-22
Release date:2006-01-25
Last modified:2019-10-23
Method:ELECTRON MICROSCOPY (7.7 Å)
Cite:Allosteric Signalling of ATP Hydrolysis in Groel-Groes Complexes.
Nat.Struct.Mol.Biol., 13, 2006
2C7D
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FITTED COORDINATES FOR GROEL-ADP7-GROES CRYO-EM COMPLEX (EMD-1181)
Descriptor:60 KDA CHAPERONIN, 10 KDA CHAPERONIN MOLECULE: GROES, PROTEIN CPN10, ...
Authors:Ranson, N.A., Clare, D.K., Farr, G.W., Houldershaw, D., Horwich, A.L., Saibil, H.R.
Deposit date:2005-11-22
Release date:2006-01-25
Last modified:2019-10-23
Method:ELECTRON MICROSCOPY (8.7 Å)
Cite:Allosteric Signalling of ATP Hydrolysis in Groel-Groes Complexes.
Nat.Struct.Mol.Biol., 13, 2006
2M5K
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ATOMIC-RESOLUTION STRUCTURE OF A DOUBLET CROSS-BETA AMYLOID FIBRIL
Descriptor:Transthyretin
Authors:Fitzpatrick, A.W.P., Debelouchina, G.T., Bayro, M.J., Clare, D.K., Caporini, M.A., Bajaj, V.S., Jaroniec, C.P., Wang, L., Ladizhansky, V., Muller, S., MacPhee, C.E., Waudby, C.A., Mott, H.R., de Simone, A., Knowles, T.P.J., Saibil, H.R., Vendruscolo, M., Orlova, E.V., Griffin, R.G., Dobson, C.M.
Deposit date:2013-02-27
Release date:2013-12-04
Last modified:2020-02-26
Method:SOLID-STATE NMR (12.7 Å), ELECTRON MICROSCOPY
Cite:Atomic structure and hierarchical assembly of a cross-beta amyloid fibril.
Proc.Natl.Acad.Sci.USA, 110, 2013
2M5M
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ATOMIC-RESOLUTION STRUCTURE OF A TRIPLET CROSS-BETA AMYLOID FIBRIL
Descriptor:Transthyretin
Authors:Fitzpatrick, A.W.P., Debelouchina, G.T., Bayro, M.J., Clare, D.K., Caporini, M.A., Bajaj, V.S., Jaroniec, C.P., Wang, L., Ladizhansky, V., Muller, S., MacPhee, C.E., Waudby, C.A., Mott, H.R., de Simone, A., Knowles, T.P.J., Saibil, H.R., Vendruscolo, M., Orlova, E.V., Griffin, R.G., Dobson, C.M.
Deposit date:2013-02-27
Release date:2013-12-04
Last modified:2020-02-26
Method:SOLID-STATE NMR (12.2 Å), ELECTRON MICROSCOPY
Cite:Atomic structure and hierarchical assembly of a cross-beta amyloid fibril.
Proc.Natl.Acad.Sci.USA, 110, 2013
2M5N
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ATOMIC-RESOLUTION STRUCTURE OF A CROSS-BETA PROTOFILAMENT
Descriptor:Transthyretin
Authors:Fitzpatrick, A.W.P., Debelouchina, G.T., Bayro, M.J., Clare, D.K., Caporini, M.A., Bajaj, V.S., Jaroniec, C.P., Wang, L., Ladizhansky, V., Muller, S., MacPhee, C.E., Waudby, C.A., Mott, H.R., de Simone, A., Knowles, T.P.J., Saibil, H.R., Vendruscolo, M., Orlova, E.V., Griffin, R.G., Dobson, C.M.
Deposit date:2013-02-27
Release date:2013-07-17
Method:SOLID-STATE NMR
Cite:Atomic structure and hierarchical assembly of a cross-{beta} amyloid fibril.
Proc.Natl.Acad.Sci.USA, 110, 2013
2XRP
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HUMAN DOUBLECORTIN N-DC REPEAT (1MJD) AND MAMMALIAN TUBULIN (1JFF AND 3HKE) DOCKED INTO THE 8-ANGSTROM CRYO-EM MAP OF DOUBLECORTIN- STABILISED MICROTUBULES
Descriptor:TUBULIN BETA-2B CHAIN, TUBULIN ALPHA-1D CHAIN, NEURONAL MIGRATION PROTEIN DOUBLECORTIN, ...
Authors:Fourniol, F.J., Sindelar, C.V., Amigues, B., Clare, D.K., Thomas, G., Perderiset, M., Francis, F., Houdusse, A., Moores, C.A.
Deposit date:2010-09-18
Release date:2010-11-24
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (8.2 Å)
Cite:Template-Free 13-Protofilament Microtubule-Map Assembly Visualized at 8 A Resolution.
J.Cell Biol., 191, 2010
3ZPK
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ATOMIC-RESOLUTION STRUCTURE OF A QUADRUPLET CROSS-BETA AMYLOID FIBRIL
Descriptor:TRANSTHYRETIN
Authors:Fitzpatrick, A.w.P., Debelouchina, G.T., Bayro, M.J., Clare, D.K., Caporini, M.A., Bajaj, V.S., Jaroniec, C.P., Wang, L., Ladizhansky, V., Muller, S.A., MacPhee, C.E., Waudby, C.A., Mott, H.R., de Simone, A., Knowles, T.P.J., Saibil, H.R., Vendruscolo, M., Orlova, E.V., Griffin, R.G., Dobson, C.M.
Deposit date:2013-02-28
Release date:2013-12-04
Last modified:2018-03-21
Method:SOLID-STATE NMR, ELECTRON MICROSCOPY
Cite:Atomic Structure and Hierarchical Assembly of a Cross-Beta Amyloid Fibril.
Proc.Natl.Acad.Sci.USA, 110, 2013
4D2Q
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NEGATIVE-STAIN ELECTRON MICROSCOPY OF E. COLI CLPB MUTANT E432A (BAP FORM BOUND TO CLPP)
Descriptor:CLPB
Authors:Carroni, M., Kummer, E., Oguchi, Y., Clare, D.K., Wendler, P., Sinning, I., Kopp, J., Mogk, A., Bukau, B., Saibil, H.R.
Deposit date:2014-05-12
Release date:2014-06-04
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (18 Å)
Cite:Head-to-Tail Interactions of the Coiled-Coil Domains Regulate Clpb Activity and Cooperation with Hsp70 in Protein Disaggregation.
Elife, 3, 2014
4D2U
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NEGATIVE-STAIN ELECTRON MICROSCOPY OF E. COLI CLPB (BAP FORM BOUND TO CLPP)
Descriptor:CHAPERONE PROTEIN CLPB
Authors:Carroni, M., Kummer, E., Oguchi, Y., Clare, D.K., Wendler, P., Sinning, I., Kopp, J., Mogk, A., Bukau, B., Saibil, H.R.
Deposit date:2014-05-13
Release date:2014-06-04
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (17 Å)
Cite:Head-to-Tail Interactions of the Coiled-Coil Domains Regulate Clpb Activity and Cooperation with Hsp70 in Protein Disaggregation.
Elife, 3, 2014
4D2X
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NEGATIVE-STAIN ELECTRON MICROSCOPY OF E. COLI CLPB OF Y503D HYPERACTIVE MUTANT (BAP FORM BOUND TO CLPP)
Descriptor:CHAPERONE PROTEIN CLPB
Authors:Carroni, M., Kummer, E., Oguchi, Y., Clare, D.K., Wendler, P., Sinning, I., Kopp, J., Mogk, A., Bukau, B., Saibil, H.R.
Deposit date:2014-05-13
Release date:2014-06-04
Last modified:2019-01-23
Method:ELECTRON MICROSCOPY (20 Å)
Cite:Head-to-Tail Interactions of the Coiled-Coil Domains Regulate Clpb Activity and Cooperation with Hsp70 in Protein Disaggregation.
Elife, 3, 2014
5NBZ
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WZZ DODECAMER FITTED BY MDFF TO THE WZZ EXPERIMENTAL MAP FROM CRYO-EM
Descriptor:WzzB
Authors:Ford, R.C., Kargas, V., Collins, R.F., Whitfield, C., Clarke, B.R., Siebert, A., Bond, P.J., Clare, D.K.
Deposit date:2017-03-02
Release date:2017-04-05
Last modified:2018-10-24
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Full-length, Oligomeric Structure of Wzz Determined by Cryoelectron Microscopy Reveals Insights into Membrane-Bound States.
Structure, 25, 2017
6ZHD
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H11-H4 BOUND TO SPIKE
Descriptor:Spike glycoprotein,Fibritin, Nanobody H11-H4, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Clare, D.K., Naismith, J.H., Weckener, M., Vogirala, V.K.
Deposit date:2020-06-22
Release date:2020-07-29
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:H11-H4 bound to Spike
To Be Published
4CIU
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CRYSTAL STRUCTURE OF E. COLI CLPB
Descriptor:CHAPERONE PROTEIN CLPB, ADENOSINE-5'-DIPHOSPHATE
Authors:Kopp, J., Sinning, I., Bukau, B., Kummer, E., Mogk, A.
Deposit date:2013-12-16
Release date:2014-05-14
Last modified:2019-05-22
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Head-to-Tail Interactions of the Coiled-Coil Domains Regulate Clpb Cooperation with Hsp70 in Protein Disaggregation
Elife, 3, 2014
6J7V
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STRUCTURE OF HRPV6 VP5 FITTED IN THE CRYOEM DENSITY OF THE SPIKE
Descriptor:VP5
Authors:El Omari, K., Li, S., Huiskonen, J.T., Stuart, D.I.
Deposit date:2019-01-18
Release date:2019-03-06
Last modified:2020-08-05
Method:ELECTRON MICROSCOPY (16 Å)
Cite:The structure of a prokaryotic viral envelope protein expands the landscape of membrane fusion proteins.
Nat Commun, 10, 2019
6QGI
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CRYSTAL STRUCTURE OF VP5 FROM HALOARCHAEAL PLEOMORPHIC VIRUS 2
Descriptor:VP5, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION
Authors:El Omari, K., Walter, T.S., Harlos, K., Grimes, J.M., Stuart, D.I., Roine, E.
Deposit date:2019-01-11
Release date:2019-02-27
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:The structure of a prokaryotic viral envelope protein expands the landscape of membrane fusion proteins.
Nat Commun, 10, 2019
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PDB entries from 2020-08-05