Author results

1MHW
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DESIGN OF NON-COVALENT INHIBITORS OF HUMAN CATHEPSIN L. FROM THE 96-RESIDUE PROREGION TO OPTIMIZED TRIPEPTIDES
Descriptor:Cathepsin L, 4-biphenylacetyl-Cys-(D)Arg-Tyr-N-(2-phenylethyl) amide
Authors:Chowdhury, S., Sivaraman, J., Wang, J., Devanathan, G., Lachance, P., Qi, H., Menard, R., Lefebvre, J., Konishi, Y., Cygler, M., Sulea, T., Purisima, E.O.
Deposit date:2002-08-21
Release date:2002-12-11
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Design of non-covalent inhibitors of human cathepsin L. From the 96-residue proregion to optimized tripeptides
J.Med.Chem., 45, 2002
2GIO
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SOLUTION STRUCTURE OF A PORTION OF THE 5'UTR OF HSPA MRNA OF BRADYRHIZOBIUM JAPONICUM
Descriptor:29-MER
Authors:Chowdhury, S., Maris, C., Allain, F.H., Narberhaus, F.
Deposit date:2006-03-29
Release date:2006-06-20
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Molecular basis for temperature sensing by an RNA thermometer.
Embo J., 25, 2006
2GIP
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SOLUTION STRUCTURE OF A PORTION OF THE 5'UTR OF HSPA MRNA FROM BRADYRHIZOBIUM JANPONICUM HAVING DELETED G83
Descriptor:28-MER
Authors:Chowdhury, S., Maris, C., Allain, F.H., Narberhaus, F.
Deposit date:2006-03-29
Release date:2006-06-20
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Molecular basis for temperature sensing by an RNA thermometer.
Embo J., 25, 2006
5UZ9
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CRYO EM STRUCTURE OF ANTI-CRISPRS, ACRF1 AND ACRF2, BOUND TO TYPE I-F CRRNA-GUIDED CRISPR SURVEILLANCE COMPLEX
Descriptor:CRISPR-associated protein Csy1, CRISPR-associated protein Csy2, CRISPR-associated protein Csy3, ...
Authors:Chowdhury, S., Carter, J., Rollins, M.F., Jackson, R.N., Hoffmann, C., Nosaka, L., Bondy-Denomy, J., Maxwell, K.L., Davidson, A.R., Fischer, E.R., Lander, G.C., Wiedenheft, B.
Deposit date:2017-02-25
Release date:2017-04-26
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure Reveals Mechanisms of Viral Suppressors that Intercept a CRISPR RNA-Guided Surveillance Complex.
Cell, 169, 2017
6NE0
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STRUCTURE OF DOUBLE-STRANDED TARGET DNA ENGAGED CSY COMPLEX FROM PSEUDOMONAS AERUGINOSA (PA-14)
Descriptor:CRISPR-associated protein Csy1, CRISPR-associated protein Csy2, CRISPR-associated protein Csy3, ...
Authors:Chowdhury, S., Rollins, M.F., Carter, J., Golden, S.M., Miettinen, H.M., Santiago-Frangos, A., Faith, D., Lawrence, M.C., Wiedenheft, B., Lander, G.C.
Deposit date:2018-12-15
Release date:2018-12-26
Last modified:2019-04-17
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure Reveals a Mechanism of CRISPR-RNA-Guided Nuclease Recruitment and Anti-CRISPR Viral Mimicry.
Mol. Cell, 74, 2019
4PBU
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SERIAL TIME-RESOLVED CRYSTALLOGRAPHY OF PHOTOSYSTEM II USING A FEMTOSECOND X-RAY LASER THE S1 STATE
Descriptor:Photosystem Q(B) protein 1, Photosystem II core light harvesting protein, Photosystem II CP43 protein, ...
Authors:Kupitz, C., Basu, S., Grotjohann, I., Fromme, R., Zatsepin, N., Rendek, K.N., Hunter, M., Shoeman, R.L., White, T.A., Wang, D., James, D., Yang, J.H., Cobb, D.E., Reeder, B., Sierra, R.G., Liu, H., Barty, A., Aquila, A., Deponte, D., Kirian, R.A., Bari, S., Bergkamp, J.J., Beyerlein, K., Bogan, M.J., Caleman, C., Chao, T.-C., Conrad, C.E., Davis, K.M., Fleckenstein, H., Galli, L., Hau-Riege, S.P., Kassemeyer, S., Laksmono, H., Liang, M., Lomb, L., Marchesini, S., Martin, A.V., Messerschmidt, M., Milathianaki, D., Nass, K., Ros, A., Roy-Chowdhury, S., Schmidt, K., Seibert, M., Steinbrener, J., Stellato, F., Yan, L., Yoon, C., Moore, T.A., Moore, A.L., Pushkar, Y., Williams, G.J., Boutet, S., Doak, R.B., Weierstall, U., Frank, M., Chapman, H.N., Spence, J.C.H., Fromme, P.
Deposit date:2014-04-13
Release date:2014-07-16
Last modified:2018-09-19
Method:X-RAY DIFFRACTION (5 Å)
Cite:Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser.
Nature, 513, 2014
4RVY
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SERIAL TIME RESOLVED CRYSTALLOGRAPHY OF PHOTOSYSTEM II USING A FEMTOSECOND X-RAY LASER. THE S STATE AFTER TWO FLASHES (S3)
Descriptor:Photosystem II protein D1 1, Photosystem II CP47 reaction center protein, Photosystem II CP43 reaction center protein, ...
Authors:Kupitz, C., Basu, S., Grotjohann, I., Fromme, R., Zatsepin, N., Rendek, K.N., Hunter, M., Shoeman, R.L., White, T.A., Wang, D., James, D., Yang, J.-H., Cobb, D.E., Reeder, B., Sierra, R.G., Liu, H., Barty, A., Aquila, A., Deponte, D., Kirian, R., Bari, S., Bergkamp, J.J., Beyerlein, K., Bogan, M.J., Caleman, C., Chao, T.-C., Conrad, C.E., Davis, K.M., Fleckenstein, H., Galli, L., Hau-Riege, S.P., Kassemeyer, S., Laksmono, H., Liang, M., Lomb, L., Marchesini, S., Martin, A.V., Messerschmidt, M., Milathianaki, D., Nass, K., Ros, A., Roy-Chowdhury, S., Schmidt, K., Seibert, M., Steinbrener, J., Stellato, F., Yan, L., Yoon, C., Moore, T.A., Moore, A.L., Pushkar, Y., Williams, G.J., Boutet, S., Doak, R.B., Weierstall, U., Frank, M., Chapman, H.N., Spence, J.C.H., Fromme, P.
Deposit date:2014-11-29
Release date:2015-11-04
Last modified:2018-09-19
Method:X-RAY DIFFRACTION (5.5 Å)
Cite:Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser.
Nature, 513, 2014
2M71
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SOLUTION STRUCTURE OF THE A C-TERMINAL DOMAIN OF TRANSLATION INITIATION FACTOR IF-3 FROM CAMPYLOBACTER JEJUNI
Descriptor:Translation initiation factor IF-3
Authors:Harris, R., Ahmed, M., Attonito, J., Bonanno, J.B., Chamala, S., Chowdhury, S., Evans, B., Fiser, A., Glenn, A.S., Hammonds, J., Hillerich, B., Khafizov, K., Lafleur, J., Love, J.D., Seidel, R.D., Stead, M., Girvin, M.E., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2013-04-16
Release date:2013-05-15
Method:SOLUTION NMR
Cite:Solution structure of the a C-terminal domain of translation initiation factor IF-3 from Campylobacter jejuni
To be Published
2M72
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SOLUTION STRUCTURE OF UNCHARACTERIZED THIOREDOXIN-LIKE PROTEIN PG_2175 FROM PORPHYROMONAS GINGIVALIS
Descriptor:Uncharacterized thioredoxin-like protein
Authors:Harris, R., Ahmed, M., Attonito, J., Bonanno, J.B., Chamala, S., Chowdhury, S., Evans, B., Fiser, A., Glenn, A.S., Hammonds, J., Hillerich, B., Khafizov, K., Lafleur, J., Love, J.D., Seidel, R.D., Stead, M., Girvin, M.E., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2013-04-16
Release date:2013-05-15
Method:SOLUTION NMR
Cite:Solution structure of uncharacterized thioredoxin-like protein PG_2175 from Porphyromonas gingivalis
To be Published
3M0E
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CRYSTAL STRUCTURE OF THE ATP-BOUND STATE OF WALKER B MUTANT OF NTRC1 ATPASE DOMAIN
Descriptor:Transcriptional regulator (NtrC family), ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION
Authors:Chen, B., Sysoeva, T.A., Chowdhury, S., Rusu, M., Birmanns, S., Guo, L., Hanson, J., Yang, H., Nixon, B.T.
Deposit date:2010-03-02
Release date:2010-11-03
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:Engagement of Arginine Finger to ATP Triggers Large Conformational Changes in NtrC1 AAA+ ATPase for Remodeling Bacterial RNA Polymerase.
Structure, 18, 2010
3V3W
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CRYSTAL STRUCTURE OF AN ENOLASE FROM THE SOIL BACTERIUM CELLVIBRIO JAPONICUS (TARGET EFI-502161) WITH BOUND MG AND GLYCEROL
Descriptor:Starvation sensing protein rspA, MAGNESIUM ION, GLYCEROL, ...
Authors:Vetting, M.W., Toro, R., Bhosle, R., Wasserman, S.R., Morisco, L.L., Sojitra, S., Seidel, R., Hillerich, B., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Zencheck, W.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)
Deposit date:2011-12-14
Release date:2012-01-11
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of an enolase from the soil bacterium Cellvibrio japonicus (TARGET EFI-502161) with bound MG and glycerol
to be published
3V4B
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CRYSTAL STRUCTURE OF AN ENOLASE FROM THE SOIL BACTERIUM CELLVIBRIO JAPONICUS (TARGET EFI-502161) WITH BOUND MG AND L-TARTRATE
Descriptor:Starvation sensing protein rspA, MAGNESIUM ION, CHLORIDE ION, ...
Authors:Vetting, M.W., Toro, R., Bhosle, R., Wasserman, S.R., Morisco, L.L., Sojitra, S., Seidel, R.D., Hillerich, B., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Al Obaidi, N., Zencheck, W.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)
Deposit date:2011-12-14
Release date:2011-12-28
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of an enolase from the soil bacterium Cellvibrio japonicus (TARGET EFI-502161) with bound MG and l-tartrate
to be published
4DO7
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CRYSTAL STRUCTURE OF AN AMIDOHYDROLASE (COG3618) FROM BURKHOLDERIA MULTIVORANS (TARGET EFI-500235) WITH BOUND ZN, SPACE GROUP C2
Descriptor:Amidohydrolase 2, ZINC ION, SULFATE ION
Authors:Vetting, M.W., Toro, R., Bhosle, R., Wasserman, S.R., Morisco, L.L., Sojitra, S., Seidel, R.D., Hillerich, B., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Al Obaidi, N.F., Zencheck, W.D., Imker, H.J., Gerlt, J.A., Raushel, F.M., Almo, S.C., Enzyme Function Initiative (EFI)
Deposit date:2012-02-09
Release date:2012-02-29
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of an amidohydrolase (cog3618) from burkholderia multivorans (target efi-500235) with bound zn, space group c2
to be published
4DYE
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CRYSTAL STRUCTURE OF AN ENOLASE (PUTATIVE SUGAR ISOMERASE, TARGET EFI-502095) FROM STREPTOMYCES COELICOLOR, NO MG, ORDERED LOOP
Descriptor:isomerase, 1,2-ETHANEDIOL, GLYCEROL
Authors:Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)
Deposit date:2012-02-28
Release date:2012-03-14
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of an enolase (putative sugar isomerase, target efi-502095) from streptomyces coelicolor, no mg, ordered loop
to be published
4E4S
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CRYSTAL STRUCTURE OF PIKA GITRL
Descriptor:Tumor necrosis factor ligand superfamily member 18, GLYCEROL, MAGNESIUM ION
Authors:Kumar, P.R., Bhosle, R., Bonanno, J., Chowdhury, S., Gizzi, A., Glen, S., Hillerich, B., Hammonds, J., Seidel, R., Toro, R., Nathenson, S.G., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC), Atoms-to-Animals: The Immune Function Network (IFN)
Deposit date:2012-03-13
Release date:2012-03-21
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of GITRL from Ochotona princeps
to be published
4E5T
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CRYSTAL STRUCTURE OF A PUTATIVE MANDELATE RACEMASE/MUCONATE LACTONIZING ENZYME (TARGET PSI-200750) FROM LABRENZIA ALEXANDRII DFL-11
Descriptor:Mandelate racemase / muconate lactonizing enzyme, C-terminal domain protein, MAGNESIUM ION
Authors:Kumar, P.R., Bonanno, J., Chowdhury, S., Foti, R., Gizzi, A., Glen, S., Hammonds, J., Hillerich, B., Matikainen, B., Seidel, R., Toro, R., Zencheck, W., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2012-03-14
Release date:2012-03-28
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of a putative MR/ML enzyme from Labrenzia alexandrii DFL-11
to be published
4E69
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CRYSTAL STRUCTURE OF A SUGAR KINASE (TARGET EFI-502132) FROM OCEANICOLA GRANULOSUS, UNLIGANDED STRUCTURE
Descriptor:2-dehydro-3-deoxygluconokinase, CHLORIDE ION, 1,2-ETHANEDIOL, ...
Authors:Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)
Deposit date:2012-03-15
Release date:2012-04-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of a sugar kinase (target EFI-502132) from Oceanicola granulosus, unliganded structure
To be Published
4EBU
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CRYSTAL STRUCTURE OF A SUGAR KINASE (TARGET EFI-502312) FROM OCEANICOLA GRANULOSUS, WITH BOUND AMP/ADP CRYSTAL FORM I
Descriptor:2-dehydro-3-deoxygluconokinase, CHLORIDE ION, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)
Deposit date:2012-03-24
Release date:2012-04-18
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a sugar kinase (Target EFI-502312) from Oceanicola granulosus, with bound AMP/ADP crystal form I
TO BE PUBLISHED
4EUM
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CRYSTAL STRUCTURE OF A SUGAR KINASE (TARGET EFI-502132) FROM OCEANICOLA GRANULOSUS WITH BOUND AMP, CRYSTAL FORM II
Descriptor:2-dehydro-3-deoxygluconokinase, ADENOSINE MONOPHOSPHATE, CHLORIDE ION, ...
Authors:Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)
Deposit date:2012-04-25
Release date:2012-05-16
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of a sugar kinase (Target EFI-502132) from Oceanicola granulosus with bound AMP, crystal form II
To be Published
4EUN
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CRYSTAL STRUCTURE OF A SUGAR KINASE (TARGET EFI-502144 FROM JANIBACTER SP. HTCC2649), UNLIGANDED STRUCTURE
Descriptor:thermoresistant glucokinase, SULFATE ION
Authors:Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)
Deposit date:2012-04-25
Release date:2012-05-16
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of a sugar kinase (Target EFI-502144 from Janibacter sp. HTCC2649), unliganded structure
To be Published
4F4R
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CRYSTAL STRUCTURE OF D-MANNONATE DEHYDRATASE HOMOLOG FROM CHROMOHALOBACTER SALEXIGENS (TARGET EFI-502114), WITH BOUND NA, ORDERED LOOP
Descriptor:D-mannonate dehydratase, SODIUM ION, CHLORIDE ION, ...
Authors:Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI), Medical Structural Genomics of Pathogenic Protozoa (MSGPP)
Deposit date:2012-05-11
Release date:2012-06-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of D-mannonate dehydratase homolog from Chromohalobacter salexigens (Target EFI-502114), with bound NA, ordered loop
to be published
4G8T
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CRYSTAL STRUCTURE OF A GLUCARATE DEHYDRATASE RELATED PROTEIN, FROM ACTINOBACILLUS SUCCINOGENES, TARGET EFI-502312, WITH SODIUM AND SULFATE BOUND, ORDERED LOOP
Descriptor:Glucarate dehydratase, SULFATE ION, SODIUM ION, ...
Authors:Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)
Deposit date:2012-07-23
Release date:2012-08-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of a glucarate dehydratase related protein, from actinobacillus succinogenes, target efi-502312, with sodium and sulfate bound, ordered loop
TO BE PUBLISHED
4G9B
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CRYSTAL STRUCTURE OF BETA-PHOSPHOGLUCOMUTASE HOMOLOG FROM ESCHERICHIA COLI, TARGET EFI-501172, WITH BOUND MG, OPEN LID
Descriptor:Beta-phosphoglucomutase, MAGNESIUM ION, CHLORIDE ION, ...
Authors:Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Dunaway-Mariano, D., Allen, K.N., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)
Deposit date:2012-07-23
Release date:2012-08-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of beta-phosphoglucomutase homolog from escherichia coli, target efi-501172, with bound mg, open lid
To be Published
4G9H
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CRYSTAL STRUCTURE OF GLUTAHTIONE S-TRANSFERASE HOMOLOG FROM YERSINIA PESTIS, TARGET EFI-501894, WITH BOUND GLUTATHIONE
Descriptor:Glutathione S-transferase, GLUTATHIONE, GLYCEROL
Authors:Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Armstrong, R.N., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)
Deposit date:2012-07-23
Release date:2012-08-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of glutahtione s-transferase homolog from yersinia pestis, target efi-501894, with bound glutathione
To be Published
4GCI
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CRYSTAL STRUCTURE OF GLUTAHTIONE S-TRANSFERASE HOMOLOG FROM YERSINIA PESTIS, TARGET EFI-501894, WITH BOUND GLUTATHIONE, MONOCLINIC FORM
Descriptor:Glutathione S-transferase, CHLORIDE ION, GLUTATHIONE
Authors:Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Armstrong, R.N., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)
Deposit date:2012-07-30
Release date:2012-08-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of glutahtione s-transferase homolog from yersinia pestis, target EFI-501894, with bound glutathione, monoclinic form
To be Published