Author results

2XYY
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DE NOVO MODEL OF BACTERIOPHAGE P22 PROCAPSID COAT PROTEIN
Descriptor:COAT PROTEIN
Authors:Chen, D.-H., Baker, M.L., Hryc, C.F., DiMaio, F., Jakana, J., Wu, W., Dougherty, M., Haase-Pettingell, C., Schmid, M.F., Jiang, W., Baker, D., King, J.A., Chiu, W.
Deposit date:2010-11-19
Release date:2011-02-02
Last modified:2018-10-03
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural Basis for Scaffolding-Mediated Assembly and Maturation of a DsDNA Virus.
Proc.Natl.Acad.Sci.USA, 108, 2011
2XYZ
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DE NOVO MODEL OF BACTERIOPHAGE P22 VIRION COAT PROTEIN
Descriptor:COAT PROTEIN
Authors:Chen, D.-H., Baker, M.L., Hryc, C.F., DiMaio, F., Jakana, J., Wu, W., Dougherty, M., Haase-Pettingell, C., Schmid, M.F., Jiang, W., Baker, D., King, J.A., Chiu, W.
Deposit date:2010-11-19
Release date:2011-02-02
Last modified:2018-10-03
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural Basis for Scaffolding-Mediated Assembly and Maturation of a DsDNA Virus.
Proc.Natl.Acad.Sci.USA, 108, 2011
3J40
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VALIDATED NEAR-ATOMIC RESOLUTION STRUCTURE OF BACTERIOPHAGE EPSILON15 DERIVED FROM CRYO-EM AND MODELING
Descriptor:gp10, gp7
Authors:Baker, M.L., Hryc, C.F., Zhang, Q., Wu, W., Jakana, J., Haase-Pettingell, C., Afonine, P.V., Adams, P.D., King, J.A., Jiang, W., Chiu, W.
Deposit date:2013-05-30
Release date:2013-07-10
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Validated near-atomic resolution structure of bacteriophage epsilon15 derived from cryo-EM and modeling.
Proc.Natl.Acad.Sci.USA, 110, 2013
3J7V
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CAPSID EXPANSION MECHANISM OF BACTERIOPHAGE T7 REVEALED BY MULTI-STATE ATOMIC MODELS DERIVED FROM CRYO-EM RECONSTRUCTIONS
Descriptor:Major capsid protein 10A
Authors:Guo, F., Liu, Z., Fang, P.A., Zhang, Q., Wright, E.T., Wu, W., Zhang, C., Vago, F., Ren, Y., Jakata, J., Chiu, W., Serwer, P., Jiang, W.
Deposit date:2014-08-12
Release date:2014-10-15
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Capsid expansion mechanism of bacteriophage T7 revealed by multistate atomic models derived from cryo-EM reconstructions.
Proc.Natl.Acad.Sci.USA, 111, 2014
3J7W
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CAPSID EXPANSION MECHANISM OF BACTERIOPHAGE T7 REVEALED BY MULTI-STATE ATOMIC MODELS DERIVED FROM CRYO-EM RECONSTRUCTIONS
Descriptor:Major capsid protein 10A
Authors:Guo, F., Liu, Z., Fang, P.A., Zhang, Q., Wright, E.T., Wu, W., Zhang, C., Vago, F., Ren, Y., Jakata, J., Chiu, W., Serwer, P., Jiang, W.
Deposit date:2014-08-12
Release date:2014-10-15
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Capsid expansion mechanism of bacteriophage T7 revealed by multistate atomic models derived from cryo-EM reconstructions.
Proc.Natl.Acad.Sci.USA, 111, 2014
3J7X
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CAPSID EXPANSION MECHANISM OF BACTERIOPHAGE T7 REVEALED BY MULTI-STATE ATOMIC MODELS DERIVED FROM CRYO-EM RECONSTRUCTIONS
Descriptor:Major capsid protein 10A
Authors:Guo, F., Liu, Z., Fang, P.A., Zhang, Q., Wright, E.T., Wu, W., Zhang, C., Vago, F., Ren, Y., Jakata, J., Chiu, W., Serwer, P., Jiang, W.
Deposit date:2014-08-12
Release date:2014-10-15
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Capsid expansion mechanism of bacteriophage T7 revealed by multistate atomic models derived from cryo-EM reconstructions.
Proc.Natl.Acad.Sci.USA, 111, 2014
3J03
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LIDLESS MM-CPN IN THE CLOSED STATE WITH ATP/ALFX
Descriptor:Lidless Mm-cpn
Authors:Zhang, J., Ma, B., DiMaio, F., Douglas, N.R., Joachimiak, L., Baker, D., Frydman, J., Levitt, M., Chiu, W.
Deposit date:2011-02-10
Release date:2011-05-18
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Cryo-EM structure of a group II chaperonin in the prehydrolysis ATP-bound state leading to lid closure.
Structure, 19, 2011
3KTT
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ATOMIC MODEL OF BOVINE TRIC CCT2(BETA) SUBUNIT DERIVED FROM A 4.0 ANGSTROM CRYO-EM MAP
Descriptor:T-complex protein 1 subunit beta
Authors:Cong, Y., Baker, M.L., Ludtke, S.J., Frydman, J., Chiu, W.
Deposit date:2009-11-25
Release date:2010-03-16
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (4 Å)
Cite:4.0-A resolution cryo-EM structure of the mammalian chaperonin TRiC/CCT reveals its unique subunit arrangement.
Proc.Natl.Acad.Sci.USA, 107, 2010
5UU5
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BACTERIOPHAGE P22 MATURE VIRION CAPSID PROTEIN
Descriptor:Major capsid protein
Authors:Hryc, C.F., Chen, D.-H., Afonine, P.V., Jakana, J., Wang, Z., Haase-Pettingell, C., Jiang, W., Adams, P.D., King, J.A., Schmid, M.F., Chiu, W.
Deposit date:2017-02-16
Release date:2017-03-15
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Accurate model annotation of a near-atomic resolution cryo-EM map.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
1NO7
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STRUCTURE OF THE LARGE PROTEASE RESISTANT UPPER DOMAIN OF VP5, THE MAJOR CAPSID PROTEIN OF HERPES SIMPLEX VIRUS-1
Descriptor:Major capsid protein
Authors:Bowman, B.R., Baker, M.L., Rixon, F.J., Chiu, W., Quiocho, F.A.
Deposit date:2003-01-15
Release date:2004-01-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of the herpesvirus major capsid protein
Embo J., 22, 2003
1QVR
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CRYSTAL STRUCTURE ANALYSIS OF CLPB
Descriptor:ClpB protein, PLATINUM (II) ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Lee, S., Sowa, M.E., Watanabe, Y., Sigler, P.B., Chiu, W., Yoshida, M., Tsai, F.T.F.
Deposit date:2003-08-28
Release date:2003-10-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:The Structure of ClpB: A Molecular Chaperone that Rescues Proteins from an Aggregated State
Cell(Cambridge,Mass.), 115, 2003
1TT9
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STRUCTURE OF THE BIFUNCTIONAL AND GOLGI ASSOCIATED FORMIMINOTRANSFERASE CYCLODEAMINASE OCTAMER
Descriptor:Formimidoyltransferase-cyclodeaminase (Formiminotransferase- cyclodeaminase) (FTCD) (58 kDa microtubule-binding protein)
Authors:Mao, Y., Vyas, N.K., Vyas, M.N., Chen, D.H., Ludtke, S.J., Chiu, W., Quiocho, F.A.
Deposit date:2004-06-22
Release date:2005-06-28
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (3.42 Å)
Cite:Structure of the bifunctional and Golgi-associated formiminotransferase cyclodeaminase octamer
Embo J., 23, 2004
2L1F
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STRUCTURE OF A CONSERVED RETROVIRAL RNA PACKAGING ELEMENT BY NMR SPECTROSCOPY AND CRYO-ELECTRON TOMOGRAPHY
Descriptor:RNA (65-MER), RNA (66-MER)
Authors:Summers, M.F., Irobalieva, R.N., Tolbert, B., Smalls-Manty, A., Iyalla, K., Loeliger, K., D'Souza, V., Khant, H., Schmid, M., Garcia, E., Telesnitsky, A., Chiu, W., Miyazaki, Y.
Deposit date:2010-07-28
Release date:2010-10-27
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of a conserved retroviral RNA packaging element by NMR spectroscopy and cryo-electron tomography.
J.Mol.Biol., 404, 2010
2M5S
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HIGH-RESOLUTION NMR STRUCTURE AND CRYO-EM IMAGING SUPPORT MULTIPLE FUNCTIONAL ROLES FOR THE ACCESSORY I-DOMAIN OF PHAGE P22 COAT PROTEIN
Descriptor:Coat protein
Authors:Rizzo, A.A., Suhanovsky, M.M., Baker, M.L., Fraser, L.C.R., Jones, L.M., Rempel, D.L., Gross, M.L., Chiu, W., Alexandrescu, A.T., Teschke, C.M.
Deposit date:2013-03-05
Release date:2014-03-05
Last modified:2014-07-02
Method:SOLUTION NMR
Cite:Multiple Functional Roles of the Accessory I-Domain of Bacteriophage P22 Coat Protein Revealed by NMR Structure and CryoEM Modeling.
Structure, 22, 2014
2XD8
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CAPSID STRUCTURE OF THE INFECTIOUS PROCHLOROCOCCUS CYANOPHAGE P-SSP7
Descriptor:T7-LIKE CAPSID PROTEIN
Authors:Liu, X., Zhang, Q., Murata, K., Baker, M.L., Sullivan, M.B., Fu, C., Dougherty, M., Schmid, M.F., Osburne, M.S., Chisholm, S.W., Chiu, W.
Deposit date:2010-04-30
Release date:2010-06-16
Last modified:2018-10-03
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Structural Changes in a Marine Podovirus Associated with Release of its Genome Into Prochlorococcus
Nat.Struct.Mol.Biol., 17, 2010
2YEW
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MODELING BARMAH FOREST VIRUS STRUCTURAL PROTEINS
Descriptor:CAPSID PROTEIN, E1 ENVELOPE GLYCOPROTEIN, E2 ENVELOPE GLYCOPROTEIN
Authors:Kostyuchenko, V.A., Jakana, J., Liu, X., Haddow, A.D., Aung, M., Weaver, S.C., Chiu, W., Lok, S.M.
Deposit date:2011-03-31
Release date:2012-04-18
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (5 Å)
Cite:The Structure of Barmah Forest Virus as Revealed by Cryo-Electron Microscopy at a 6-Angstrom Resolution Has Detailed Transmembrane Protein Architecture and Interactions.
J.Virol., 85, 2011
3B5U
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ACTIN FILAMENT MODEL FROM EXTENDED FORM OF ACROMSOMAL BUNDLE IN THE LIMULUS SPERM
Descriptor:Actin, alpha skeletal muscle
Authors:Cong, Y., Topf, M., Sali, A., Matsudaira, P., Dougherty, M., Chiu, W., Schmid, M.F.
Deposit date:2007-10-26
Release date:2008-04-15
Last modified:2018-07-18
Method:ELECTRON CRYSTALLOGRAPHY (9.5 Å)
Cite:Crystallographic conformers of actin in a biologically active bundle of filaments
J.Mol.Biol., 375, 2008
3B63
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ACTIN FILAMENT MODEL IN THE EXTENDED FORM OF ACROMSOMAL BUNDLE IN THE LIMULUS SPERM
Descriptor:Actin
Authors:Cong, Y., Topf, M., Sali, A., Matsudaira, P., Dougherty, M., Chiu, W., Schmid, M.F.
Deposit date:2007-10-26
Release date:2008-11-18
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (9.5 Å)
Cite:Crystallographic conformers of actin in a biologically active bundle of filaments.
J.Mol.Biol., 375, 2008
3C9V
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C7 SYMMETRIZED STRUCTURE OF UNLIGANDED GROEL AT 4.7 ANGSTROM RESOLUTION FROM CRYOEM
Descriptor:60 kDa chaperonin
Authors:Ludtke, S.J., Baker, M.L., Chen, D.H., Song, J.L., Chuang, D., Chiu, W.
Deposit date:2008-02-18
Release date:2008-09-02
Last modified:2015-07-01
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:De Novo Backbone Trace of GroEL from Single Particle Electron Cryomicroscopy.
Structure, 16, 2008
3CAU
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D7 SYMMETRIZED STRUCTURE OF UNLIGANDED GROEL AT 4.2 ANGSTROM RESOLUTION BY CRYOEM
Descriptor:60 kDa chaperonin
Authors:Ludtke, S.J., Baker, M.L., Chen, D.H., Song, J.L., Chuang, D., Chiu, W.
Deposit date:2008-02-20
Release date:2008-09-02
Last modified:2015-07-01
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:De Novo Backbone Trace of GroEL from Single Particle Electron Cryomicroscopy.
Structure, 16, 2008
3IXV
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SCORPION HEMOCYANIN RESTING STATE PSEUDO ATOMIC MODEL BUILT BASED ON CRYO-EM DENSITY MAP
Descriptor:Hemocyanin AA6 chain
Authors:Cong, Y., Zhang, Q., Woolford, D., Schweikardt, T., Khant, H., Ludtke, S., Chiu, W., Decker, H.
Deposit date:2009-02-13
Release date:2009-06-02
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (6.8 Å)
Cite:Structural Mechanism of SDS-Induced Enzyme Activity of Scorpion Hemocyanin Revealed by Electron Cryomicroscopy.
Structure, 17, 2009
3IXW
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SCORPION HEMOCYANIN ACTIVATED STATE PSEUDO ATOMIC MODEL BUILT BASED ON CRYO-EM DENSITY MAP
Descriptor:Hemocyanin AA6 chain
Authors:Cong, Y., Zhang, Q., Woolford, D., Schweikardt, T., Khant, H., Ludtke, S., Chiu, W., Decker, H.
Deposit date:2009-02-13
Release date:2009-06-02
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (8 Å)
Cite:Structural Mechanism of SDS-Induced Enzyme Activity of Scorpion Hemocyanin Revealed by Electron Cryomicroscopy.
Structure, 17, 2009
3IYF
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ATOMIC MODEL OF THE LIDLESS MM-CPN IN THE OPEN STATE
Descriptor:Chaperonin
Authors:Zhang, J., Baker, M.L., Schroeder, G., Douglas, N.R., Reissmann, S., Jakana, J., Dougherty, M., Fu, C.J., Levitt, M., Ludtke, S.J., Frydman, J., Chiu, W.
Deposit date:2009-10-23
Release date:2010-02-02
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (8 Å)
Cite:Mechanism of folding chamber closure in a group II chaperonin
Nature, 463, 2010
3IYG
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CA MODEL OF BOVINE TRIC/CCT DERIVED FROM A 4.0 ANGSTROM CRYO-EM MAP
Descriptor:T-complex protein 1 subunit theta, T-complex protein 1 subunit gamma, T-complex protein 1 subunit zeta, ...
Authors:Cong, Y., Baker, M.L., Ludtke, S.J., Frydman, J., Chiu, W.
Deposit date:2009-11-28
Release date:2010-03-16
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (4 Å)
Cite:4.0-A resolution cryo-EM structure of the mammalian chaperonin TRiC/CCT reveals its unique subunit arrangement.
Proc.Natl.Acad.Sci.USA, 107, 2010
3IZH
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MM-CPN D386A WITH ATP
Descriptor:Chaperonin
Authors:Douglas, N.R., Reissmann, S., Zhang, J., Chen, B., Jakana, J., Kumar, R., Chiu, W., Frydman, J.
Deposit date:2010-10-29
Release date:2011-02-02
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (11 Å)
Cite:Dual Action of ATP Hydrolysis Couples Lid Closure to Substrate Release into the Group II Chaperonin Chamber.
Cell(Cambridge,Mass.), 144, 2011