Author results

1CFM
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CYTOCHROME F FROM CHLAMYDOMONAS REINHARDTII
Descriptor:CYTOCHROME F, PROTOPORPHYRIN IX CONTAINING FE
Authors:Chi, Y.I., Huang, L.S., Zhang, Z., Fernandez-Velasco, J.G., Malkin, R., Berry, E.A.
Deposit date:1998-09-18
Release date:1999-04-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:X-ray structure of a truncated form of cytochrome f from chlamydomonas reinhardtii.
Biochemistry, 39, 2000
2QUS
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HAMMERHEAD RIBOZYME G12A MUTANT PRE-CLEAVAGE
Descriptor:Hammerhead ribozyme, MAGNESIUM ION
Authors:Chi, Y.I., Scott, W.G., Kim, S.H.
Deposit date:2007-08-06
Release date:2008-07-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Capturing hammerhead ribozyme structures in action by modulating general base catalysis.
Plos Biol., 6, 2008
2QUW
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HAMMERHEAD RIBOZYME G12A MUTANT AFTER CLEAVAGE
Descriptor:Hammerhead ribozyme, cleaved fragment, MAGNESIUM ION
Authors:Chi, Y.I., Scott, W.G., Kim, S.H.
Deposit date:2007-08-06
Release date:2008-07-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Capturing hammerhead ribozyme structures in action by modulating general base catalysis.
Plos Biol., 6, 2008
6CHT
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HNF4ALPHA IN COMPLEX WITH THE COREPRESSOR EBP1 FRAGMENT
Descriptor:Hepatocyte nuclear factor 4-alpha, Proliferation-associated protein 2G4, LAURIC ACID
Authors:Chi, Y.I., Singh, P., Lee, I.K.
Deposit date:2018-02-22
Release date:2019-02-27
Method:X-RAY DIFFRACTION (3.174 Å)
Cite:To be published
To Be Published
2H8R
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HEPATOCYTE NUCLEAR FACTOR 1B BOUND TO DNA: MODY5 GENE PRODUCT
Descriptor:5'-D(*CP*TP*TP*GP*GP*TP*TP*AP*AP*TP*AP*AP*TP*TP*CP*AP*CP*CP*AP*G)-3', 5'-D(*GP*CP*TP*GP*GP*TP*GP*AP*AP*TP*TP*AP*TP*TP*AP*AP*CP*CP*AP*A)-3', Hepatocyte nuclear factor 1-beta
Authors:Lu, P., Rha, G.B., Chi, Y.I.
Deposit date:2006-06-07
Release date:2007-06-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis of disease-causing mutations in hepatocyte nuclear factor 1beta.
Biochemistry, 46, 2007
3CBB
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CRYSTAL STRUCTURE OF HEPATOCYTE NUCLEAR FACTOR 4ALPHA IN COMPLEX WITH DNA: DIABETES GENE PRODUCT
Descriptor:Hepatocyte Nuclear Factor 4-alpha promoter element DNA, Hepatocyte Nuclear Factor 4-alpha, DNA binding domain, ...
Authors:Lu, P., Rha, G.B., Melikishvili, M., Adkins, B.C., Fried, M.G., Chi, Y.I.
Deposit date:2008-02-21
Release date:2008-10-07
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of natural promoter recognition by a unique nuclear receptor, HNF4alpha. Diabetes gene product.
J.Biol.Chem., 283, 2008
1EKG
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MATURE HUMAN FRATAXIN
Descriptor:FRATAXIN
Authors:Dhe-Paganon, S., Shigeta, R., Chi, Y.I., Ristow, M., Shoelson, S.E.
Deposit date:2000-03-08
Release date:2000-11-08
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of human frataxin.
J.Biol.Chem., 275, 2000
1M7W
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HNF4A LIGAND BINDING DOMAIN WITH BOUND FATTY ACID
Descriptor:Hepatocyte nuclear factor 4-alpha, LAURIC ACID
Authors:Dhe-Paganon, S., Duda, K., Iwamoto, M., Chi, Y.I., Shoelson, S.E.
Deposit date:2002-07-22
Release date:2003-07-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of the HNF4 alpha ligand binding domain in complex with endogenous fatty acid ligand
J.Biol.Chem., 277, 2002
1SEB
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COMPLEX OF THE HUMAN MHC CLASS II GLYCOPROTEIN HLA-DR1 AND THE BACTERIAL SUPERANTIGEN SEB
Descriptor:HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, ENDOGENOUS PEPTIDE MODEL, POLY-ALA, ...
Authors:Jardetzky, T.S., Brown, J.H., Gorga, J.C., Stern, L.J., Urban, R.G., Chi, Y.I., Stauffacher, C., Strominger, J.L., Wiley, D.C.
Deposit date:1995-11-26
Release date:1996-06-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Three-dimensional structure of a human class II histocompatibility molecule complexed with superantigen.
Nature, 368, 1994
2BCC
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STIGMATELLIN-BOUND CYTOCHROME BC1 COMPLEX FROM CHICKEN
Descriptor:UBIQUINOL CYTOCHROME C OXIDOREDUCTASE, PROTOPORPHYRIN IX CONTAINING FE, UBIQUINONE-10, ...
Authors:Zhang, Z., Huang, L., Shulmeister, V.M., Chi, Y.I., Kim, K.K., Hung, L.W., Crofts, A.R., Berry, E.A., Kim, S.H.
Deposit date:1998-09-18
Release date:1999-08-02
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Electron Transfer by Domain Movement in Cytochrome Bc1
Nature, 392, 1998
3H1H
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CYTOCHROME BC1 COMPLEX FROM CHICKEN
Descriptor:UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I, MITOCHONDRIAL, UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN 2, ...
Authors:Zhang, Z., Huang, L., Shulmeister, V.M., Chi, Y.I., Kim, K.K., Hung, L.W., Crofts, A.R., Berry, E.A., Kim, S.H.
Deposit date:2009-04-12
Release date:2009-04-28
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (3.16 Å)
Cite:Electron Transfer by Domain Movement in Cytochrome Bc1
Nature, 392, 1998
3H1I
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STIGMATELLIN AND ANTIMYCIN BOUND CYTOCHROME BC1 COMPLEX FROM CHICKEN
Descriptor:UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I, MITOCHONDRIAL, UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN 2, ...
Authors:Zhang, Z., Huang, L., Shulmeister, V.M., Chi, Y.I., Kim, K.K., Hung, L.W., Crofts, A.R., Berry, E.A., Kim, S.H.
Deposit date:2009-04-12
Release date:2009-04-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.53 Å)
Cite:Electron Transfer by Domain Movement in Cytochrome Bc1
Nature, 392, 1998
1CK1
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STRUCTURE OF STAPHYLOCOCCAL ENTEROTOXIN C3
Descriptor:PROTEIN (ENTEROTOXIN TYPE C-3), ZINC ION
Authors:Chi, Y.-I., Bohach, G.A., Stauffacher, C.V.
Deposit date:1999-04-26
Release date:2002-07-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Zinc-mediated dimerization and its effect on activity and conformation of staphylococcal enterotoxin type C.
J.Biol.Chem., 277, 2002
1QVB
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CRYSTAL STRUCTURE OF THE BETA-GLYCOSIDASE FROM THE HYPERTHERMOPHILE THERMOSPHAERA AGGREGANS
Descriptor:BETA-GLYCOSIDASE
Authors:Chi, Y.-I., Martinez-Cruz, L.A., Swanson, R.V., Robertson, D.E., Kim, S.-H.
Deposit date:1999-07-07
Release date:1999-07-13
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the beta-glycosidase from the hyperthermophile Thermosphaera aggregans: insights into its activity and thermostability.
FEBS Lett., 445, 1999
1BCC
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CYTOCHROME BC1 COMPLEX FROM CHICKEN
Descriptor:UBIQUINOL CYTOCHROME C OXIDOREDUCTASE, PROTOPORPHYRIN IX CONTAINING FE, UBIQUINONE-10, ...
Authors:Zhang, Z., Huang, L., Shulmeister, V.M., Chi, Y.-I., Kim, K.K., Hung, L.-W., Crofts, A.R., Berry, E.A., Kim, S.-H.
Deposit date:1998-03-23
Release date:1998-08-19
Last modified:2014-10-29
Method:X-RAY DIFFRACTION (3.16 Å)
Cite:Electron transfer by domain movement in cytochrome bc1.
Nature, 392, 1998
3BCC
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STIGMATELLIN AND ANTIMYCIN BOUND CYTOCHROME BC1 COMPLEX FROM CHICKEN
Descriptor:UBIQUINOL CYTOCHROME C OXIDOREDUCTASE, PROTOPORPHYRIN IX CONTAINING FE, STIGMATELLIN, ...
Authors:Zhang, Z., Huang, L., Shulmeister, V.M., Chi, Y.-I., Kim, K.K., Hung, L.-W., Crofts, A.R., Berry, E.A., Kim, S.-H.
Deposit date:1998-03-23
Release date:1998-08-19
Last modified:2018-04-25
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Electron transfer by domain movement in cytochrome bc1.
Nature, 392, 1998
3FS1
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CRYSTAL STRUCTURE OF HNF4A LBD IN COMPLEX WITH THE LIGAND AND THE COACTIVATOR PGC-1A FRAGMENT
Descriptor:Hepatocyte nuclear factor 4-alpha, PPARgamma Coactivator-1a (PGC-1a), MYRISTIC ACID
Authors:Rha, G., Wu, G., Chi, Y.
Deposit date:2009-01-08
Release date:2009-10-27
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Multiple binding modes between HNF4alpha and the LXXLL motifs of PGC-1alpha lead to full activation
J.Biol.Chem., 284, 2009
3H1J
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STIGMATELLIN-BOUND CYTOCHROME BC1 COMPLEX FROM CHICKEN
Descriptor:MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I, MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN 2, Cytochrome b, ...
Authors:Zhang, Z., Huang, L., Shulmeister, V.M., Chi, Y.-I., Kim, K.K., Hung, L.-W., Crofts, A.R., Berry, E.A., Kim, S.-H.
Deposit date:2009-04-12
Release date:2009-04-28
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Electron Transfer by Domain Movement in Cytochrome Bc1
Nature, 392, 1998
402D
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5'-R(*CP*GP*CP*CP*AP*GP*CP*G)-3'
Descriptor:RNA(5'-R(*CP*GP*CP*CP*AP*GP*CP*G)-3')
Authors:Jang, S.B., Hung, L.-W., Chi, Y.-I., Holbrook, E.L., Carter, R., Holbrook, S.R.
Deposit date:1998-06-04
Release date:1998-06-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of an RNA internal loop consisting of tandem C-A+ base pairs.
Biochemistry, 37, 1998
4KZ2
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CRYSTAL STRUCTURE OF PHI29 PRNA 3WJ CORE
Descriptor:phi29 pRNA 3WJ core RNA 18 mer, phi29 pRNA 3WJ core RNA 20 mer, phi29 pRNA 3WJ core RNA 16 mer, ...
Authors:Zhang, H., Endrizzi, J.A., Shu, Y., Haque, F., Sauter, C., Guo, P., Chi, Y.-I.
Deposit date:2013-05-29
Release date:2013-10-16
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Crystal structure of 3WJ core revealing divalent ion-promoted thermostability and assembly of the Phi29 hexameric motor pRNA.
Rna, 19, 2013
5DUI
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IDENTIFICATION OF A NEW FOXO1 BINDING SITE THAT PRECLUDES CREB BINDING AT THE GLUCOSE-6-PHOSPHATASE CATALYTIC SUBUNIT GENE PROMOTER
Descriptor:Forkhead box protein O1, DNA (5'-D(*TP*TP*TP*TP*CP*TP*AP*TP*TP*TP*TP*AP*CP*GP*TP*AP*AP*AP*TP*CP*A)-3'), DNA (5'-D(*AP*TP*GP*AP*TP*TP*TP*AP*CP*GP*TP*AP*AP*AP*AP*TP*AP*GP*AP*AP*A)-3')
Authors:Singh, P., Endrizzi, J.A., Chi, Y.-I.
Deposit date:2015-09-18
Release date:2016-09-21
Last modified:2017-12-20
Method:X-RAY DIFFRACTION (2.306 Å)
Cite:Crystal structures reveal a new and novel FoxO1 binding site within the human glucose-6-phosphatase catalytic subunit 1 gene promoter.
J. Struct. Biol., 198, 2017
1IFR
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STRUCTURE OF LAMIN A/C GLOBULAR DOMAIN
Descriptor:Lamin A/C, GLYCEROL
Authors:Dhe-Paganon, S., Werner, E.D., Shoelson, S.E.
Deposit date:2001-04-13
Release date:2002-07-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure of the globular tail of nuclear lamin.
J.Biol.Chem., 277, 2002
1ESF
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STAPHYLOCOCCAL ENTEROTOXIN A
Descriptor:STAPHYLOCOCCAL ENTEROTOXIN A, CADMIUM ION
Authors:Schad, E.M., Svensson, L.A.
Deposit date:1995-05-25
Release date:1996-07-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the superantigen staphylococcal enterotoxin type A.
EMBO J., 14, 1995
3CWB
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CHICKEN CYTOCHROME BC1 COMPLEX INHIBITED BY AN IODINATED ANALOGUE OF THE POLYKETIDE CROCACIN-D
Descriptor:MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I, MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN 2, Cytochrome b, ...
Authors:Huang, L., Cromartie, T., Viner, R., Crowley, P.J., Berry, E.A.
Deposit date:2008-04-21
Release date:2008-08-12
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (3.51 Å)
Cite:The role of molecular modeling in the design of analogues of the fungicidal natural products crocacins A and D.
Bioorg.Med.Chem., 16, 2008