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2F8N
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BU of 2f8n by Molmil
2.9 Angstrom X-ray structure of hybrid macroH2A nucleosomes
Descriptor: Core histone macro-H2A.1, Histone 3, H2ba, ...
Authors:Chakravarthy, S, Luger, K.
Deposit date:2005-12-02
Release date:2006-05-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Nucleosomes containing the histone domain of macroH2A: In vitro possibilities.
To be Published
1U35
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BU of 1u35 by Molmil
Crystal structure of the nucleosome core particle containing the histone domain of macroH2A
Descriptor: H2A histone family, Hist1h4i protein, Histone H3.1, ...
Authors:Chakravarthy, S, Gundimella, S.K, Caron, C, Perche, P.Y, Pehrson, J.R, Khochbin, S, Luger, K.
Deposit date:2004-07-20
Release date:2005-09-27
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural characterization of the histone variant macroH2A.
Mol.Cell.Biol., 25, 2005
1YD9
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BU of 1yd9 by Molmil
1.6A Crystal Structure of the Non-Histone Domain of the Histone Variant MacroH2A1.1.
Descriptor: Core histone macro-H2A.1, GOLD ION
Authors:Chakravarthy, S, Swamy, G.Y.S.K, Caron, C, Perche, P.Y, Pehrson, J.R, Khochbin, S, Luger, K.
Deposit date:2004-12-23
Release date:2005-09-27
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural characterization of the histone variant macroH2A
Mol.Cell.Biol., 25, 2005
2NQB
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BU of 2nqb by Molmil
Drosophila Nucleosome Structure
Descriptor: Histone H2A, Histone H2B, Histone H3, ...
Authors:Luger, K, Chakravarthy, S.
Deposit date:2006-10-30
Release date:2007-09-11
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Comparative analysis of nucleosome structures from different species.
To be Published
6NXJ
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BU of 6nxj by Molmil
Flavin Transferase ApbE from Vibrio cholerae, H257G mutant
Descriptor: FAD:protein FMN transferase, FLAVIN-ADENINE DINUCLEOTIDE, MAGNESIUM ION
Authors:Osipiuk, J, Fang, X, Chakravarthy, S, Juarez, O, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2019-02-08
Release date:2019-03-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Conserved residue His-257 ofVibrio choleraeflavin transferase ApbE plays a critical role in substrate binding and catalysis.
J.Biol.Chem., 294, 2019
6NXI
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BU of 6nxi by Molmil
Flavin Transferase ApbE from Vibrio cholerae
Descriptor: 1,2-ETHANEDIOL, FAD:protein FMN transferase, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Osipiuk, J, Fang, X, Chakravarthy, S, Juarez, O, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2019-02-08
Release date:2019-03-13
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Conserved residue His-257 ofVibrio choleraeflavin transferase ApbE plays a critical role in substrate binding and catalysis.
J.Biol.Chem., 294, 2019
5KN9
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BU of 5kn9 by Molmil
MutY N-terminal domain in complex with DNA containing an intrahelical oxoG:A base-pair
Descriptor: Adenine DNA glycosylase, CALCIUM ION, DNA (5'-D(*AP*GP*CP*AP*CP*AP*GP*GP*AP*T)-3'), ...
Authors:Wang, L, Chakravarthy, S, Verdine, G.L.
Deposit date:2016-06-27
Release date:2017-02-08
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Structural Basis for the Lesion-scanning Mechanism of the MutY DNA Glycosylase.
J. Biol. Chem., 292, 2017
5KN8
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BU of 5kn8 by Molmil
MutY N-terminal domain in complex with undamaged DNA
Descriptor: Adenine DNA glycosylase, CALCIUM ION, DNA (5'-D(*AP*GP*CP*AP*CP*AP*GP*GP*AP*T)-3'), ...
Authors:Wang, L, Chakravarthy, S, Verdine, G.L.
Deposit date:2016-06-27
Release date:2017-02-08
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structural Basis for the Lesion-scanning Mechanism of the MutY DNA Glycosylase.
J. Biol. Chem., 292, 2017
5VHG
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BU of 5vhg by Molmil
Crystal structure of pentad mutant GAPR-1
Descriptor: Golgi-associated plant pathogenesis-related protein 1, SULFATE ION
Authors:Li, Y, Zhao, Y, Su, M, Chakravarthy, S, Colbert, C.L, Levine, B, Sinha, S.C.
Deposit date:2017-04-13
Release date:2017-09-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Structural insights into the interaction of the conserved mammalian proteins GAPR-1 and Beclin 1, a key autophagy protein.
Acta Crystallogr D Struct Biol, 73, 2017
4C0L
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BU of 4c0l by Molmil
Crystal structure of Drosophila Miro EF hand and cGTPase domains bound to one magnesium ion and Mg:GDP (MgGDP-MiroS)
Descriptor: GUANOSINE-5'-DIPHOSPHATE, L-HOMOSERINE, MAGNESIUM ION, ...
Authors:Klosowiak, J.L, Focia, P.J, Wawrzak, Z, Chakravarthy, S, Landahl, E.C, Freymann, D.M, Rice, S.E.
Deposit date:2013-08-05
Release date:2013-10-09
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural Coupling of the EF Hand and C-Terminal Gtpase Domains in the Mitochondrial Protein Miro.
Embo Rep., 14, 2013
4C0K
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BU of 4c0k by Molmil
Crystal structure of Drosophila Miro EF hand and cGTPase domains bound to one calcium ion (Ca-MiroS)
Descriptor: CALCIUM ION, L-HOMOSERINE, MITOCHONDRIAL RHO GTPASE, ...
Authors:Klosowiak, J.L, Focia, P.J, Wawrzak, Z, Chakravarthy, S, Landahl, E.C, Freymann, D.M, Rice, S.E.
Deposit date:2013-08-05
Release date:2013-10-09
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.801 Å)
Cite:Structural Coupling of the EF Hand and C-Terminal Gtpase Domains in the Mitochondrial Protein Miro.
Embo Rep., 14, 2013
4C0J
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BU of 4c0j by Molmil
Crystal structure of Drosophila Miro EF hand and cGTPase domains in the apo state (Apo-MiroS)
Descriptor: L-HOMOSERINE, MITOCHONDRIAL RHO GTPASE, SODIUM ION, ...
Authors:Klosowiak, J.L, Focia, P.J, Wawrzak, Z, Chakravarthy, S, Landahl, E.C, Freymann, D.M, Rice, S.E.
Deposit date:2013-08-05
Release date:2013-10-09
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:Structural Coupling of the EF Hand and C-Terminal Gtpase Domains in the Mitochondrial Protein Miro.
Embo Rep., 14, 2013
4MN3
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BU of 4mn3 by Molmil
Chromodomain antagonists that target the polycomb-group methyllysine reader protein Chromobox homolog 7 (CBX7)
Descriptor: 1,2-ETHANEDIOL, 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, Chromobox protein homolog 7, ...
Authors:Chakravarthi, S, Daze, K, Douglas, S, Quon, T, Dev, A, Peng, F, Heller, M, Boulanger, M.J, Wulff, J, Hof, F.
Deposit date:2013-09-09
Release date:2014-04-02
Last modified:2014-10-08
Method:X-RAY DIFFRACTION (1.542 Å)
Cite:Chromodomain Antagonists That Target the Polycomb-Group Methyllysine Reader Protein Chromobox Homolog 7 (CBX7).
J.Med.Chem., 57, 2014
4RKK
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BU of 4rkk by Molmil
Structure of a product bound phosphatase
Descriptor: Laforin, PHOSPHATE ION, alpha-D-glucopyranose, ...
Authors:Vander Kooi, C.W.
Deposit date:2014-10-13
Release date:2015-01-07
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural mechanism of laforin function in glycogen dephosphorylation and lafora disease.
Mol.Cell, 57, 2015
6D71
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BU of 6d71 by Molmil
Crystal Structure of the Human Miro1 N-terminal GTPase bound to GTP
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Mitochondrial Rho GTPase 1
Authors:Smith, K.P, Focia, P.J, Rice, S.E, Freymann, D.M.
Deposit date:2018-04-23
Release date:2019-10-09
Last modified:2022-10-05
Method:X-RAY DIFFRACTION (1.7180779 Å)
Cite:Insight into human Miro1/2 domain organization based on the structure of its N-terminal GTPase.
J.Struct.Biol., 212, 2020
6X6N
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BU of 6x6n by Molmil
NMR structure of the putative GTPase-Activating (GAP) domain of VopE
Descriptor: Outer membrane virulence protein yopE
Authors:Smith, K.P, Lee, W, Tonelli, M.
Deposit date:2020-05-28
Release date:2021-12-22
Last modified:2023-06-14
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:Solution structure and dynamics of the mitochondrial-targeted GTPase-activating protein (GAP) VopE by an integrated NMR/SAXS approach.
Protein Sci., 31, 2022
7JRD
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BU of 7jrd by Molmil
The crystal structure of lactoferrin binding protein B (LbpB) from Neisseria meningitidis in complex with human lactoferrin
Descriptor: BICARBONATE ION, FE (III) ION, Lactoferrin-binding protein B, ...
Authors:Yadav, R, Noinaj, N.
Deposit date:2020-08-12
Release date:2021-10-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structural insight into the dual function of LbpB in mediating Neisserial pathogenesis.
Elife, 10, 2021
6POO
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BU of 6poo by Molmil
Novel structure of the N-terminal helical domain of BibA, a group B streptococcus immunogenic bacterial adhesin
Descriptor: BibA
Authors:Manne, K, Narayana, S.V.
Deposit date:2019-07-04
Release date:2020-08-12
Method:X-RAY DIFFRACTION (3.03 Å)
Cite:Novel structure of the N-terminal helical domain of BibA, a group B streptococcus immunogenic bacterial adhesin.
Acta Crystallogr D Struct Biol, 76, 2020
4ZIA
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BU of 4zia by Molmil
Crystal Structure of STAT3 N-terminal domain
Descriptor: FORMIC ACID, MAGNESIUM ION, NICKEL (II) ION, ...
Authors:Hu, T, Chopra, R.
Deposit date:2015-04-28
Release date:2015-07-29
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Impact of the N-Terminal Domain of STAT3 in STAT3-Dependent Transcriptional Activity.
Mol.Cell.Biol., 35, 2015
6BBP
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BU of 6bbp by Molmil
Model for compact volume of truncated monomeric Cytohesin-3 (Grp1; amino acids 63-399) E161A 6GS Arf6 Q67L fusion protein
Descriptor: Cytohesin-3,ADP-ribosylation factor 6, GUANOSINE-5'-TRIPHOSPHATE, INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE, ...
Authors:Das, S, Malaby, A.W, Lambright, D.G.
Deposit date:2017-10-19
Release date:2018-01-10
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (35 Å)
Cite:Structural Dynamics Control Allosteric Activation of Cytohesin Family Arf GTPase Exchange Factors.
Structure, 26, 2018
6BBQ
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BU of 6bbq by Molmil
Model for extended volume of truncated monomeric Cytohesin-3 (Grp1; amino acids 63-399) E161A Arf6 Q67L fusion protein
Descriptor: Cytohesin-3,ADP-ribosylation factor 6, GUANOSINE-5'-TRIPHOSPHATE, INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE, ...
Authors:Das, S, Malaby, A.W, Lambright, D.G.
Deposit date:2017-10-19
Release date:2018-01-10
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (35 Å)
Cite:Structural Dynamics Control Allosteric Activation of Cytohesin Family Arf GTPase Exchange Factors.
Structure, 26, 2018
5K8P
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BU of 5k8p by Molmil
Zn2+/Tetrahedral intermediate-bound R289A 5-nitroanthranilate aminohydrolase
Descriptor: (6~{R})-6-azanyl-3-nitro-6-oxidanyl-cyclohexa-1,3-diene-1-carboxylic acid, 5-nitroanthranilic acid aminohydrolase, GLYCEROL, ...
Authors:Kalyoncu, S.
Deposit date:2016-05-30
Release date:2016-10-05
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Enzymatic hydrolysis by transition-metal-dependent nucleophilic aromatic substitution.
Nat.Chem.Biol., 12, 2016
5V7Y
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BU of 5v7y by Molmil
Prolyl 4-Hydroxylase Interacts with and Modifies Elongation Factor Tu
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-OXOGLUTARIC ACID, 2OG-Fe(II) oxygenase, ...
Authors:Schnicker, N.J, Dey, M.
Deposit date:2017-03-21
Release date:2017-10-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Bacillus anthracis Prolyl 4-Hydroxylase Interacts with and Modifies Elongation Factor Tu.
Biochemistry, 56, 2017
6U3E
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BU of 6u3e by Molmil
Best fitting antiparallel model for Volume 1 of truncated dimeric Cytohesin-3 (Grp1; amino acids 14-399)
Descriptor: Cytohesin-3, INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE
Authors:Das, S, Lambright, D.G.
Deposit date:2019-08-21
Release date:2019-09-25
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (53 Å)
Cite:Structural Organization and Dynamics of Homodimeric Cytohesin Family Arf GTPase Exchange Factors in Solution and on Membranes.
Structure, 27, 2019
6U3G
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BU of 6u3g by Molmil
Best fitting antiparallel model for Volume 2 of truncated dimeric Cytohesin-3 (Grp1; amino acids 14-399)
Descriptor: Cytohesin-3, INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE
Authors:Das, S, Lambright, D.G.
Deposit date:2019-08-21
Release date:2019-09-25
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (53 Å)
Cite:Structural Organization and Dynamics of Homodimeric Cytohesin Family Arf GTPase Exchange Factors in Solution and on Membranes.
Structure, 27, 2019

 

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