Author results

6QM2
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NLAIV RESTRICTION ENDONUCLEASE
Descriptor:Type-2 restriction enzyme NlaIV, SODIUM ION, POTASSIUM ION
Authors:Czapinska, H., Siwek, W., Szczepanowski, R.H., Bujnicki, J.M., Bochtler, M., Skowronek, K.
Deposit date:2019-02-01
Release date:2019-05-01
Last modified:2019-06-05
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure and Directed Evolution of Specificity of NlaIV Restriction Endonuclease.
J.Mol.Biol., 431, 2019
3HJ6
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STRUCTURE OF HALOTHERMOTHRIX ORENII FRUCTOKINASE (FRK)
Descriptor:Fructokinase
Authors:Chua, T.K., Seetharaman, J., Kasprzak, J.M., Ng, C., Patel, B.K., Love, C., Bujnicki, J.M., Sivaraman, J.
Deposit date:2009-05-21
Release date:2010-06-09
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of a fructokinase homolog from Halothermothrix orenii
J.Struct.Biol., 171, 2010
2PJD
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CRYSTAL STRUCTURE OF 16S RRNA METHYLTRANSFERASE RSMC
Descriptor:Ribosomal RNA small subunit methyltransferase C
Authors:Sunita, S., Purta, E., Durawa, M., Tkaczuk, K.L., Bujnicki, J.M., Sivaraman, J.
Deposit date:2007-04-16
Release date:2007-07-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Functional specialization of domains tandemly duplicated within 16S rRNA methyltransferase RsmC
Nucleic Acids Res., 35, 2007
2Y7C
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ATOMIC MODEL OF THE OCR-BOUND METHYLASE COMPLEX FROM THE TYPE I RESTRICTION-MODIFICATION ENZYME ECOKI (M2S1). BASED ON FITTING INTO EM MAP 1534.
Descriptor:TYPE-1 RESTRICTION ENZYME ECOKI SPECIFICITY PROTEIN, TYPE I RESTRICTION ENZYME ECOKI M PROTEIN, GENE 0.3 PROTEIN
Authors:Kennaway, C.K., Obarska-Kosinska, A., White, J.H., Tuszynska, I., Cooper, L.P., Bujnicki, J.M., Trinick, J., Dryden, D.T.F.
Deposit date:2011-01-31
Release date:2011-02-09
Last modified:2019-10-23
Method:ELECTRON MICROSCOPY (18 Å)
Cite:The Structure of M.Ecoki Type I DNA Methyltransferase with a DNA Mimic Antirestriction Protein.
Nucleic Acids Res., 37, 2009
2Y7H
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ATOMIC MODEL OF THE DNA-BOUND METHYLASE COMPLEX FROM THE TYPE I RESTRICTION-MODIFICATION ENZYME ECOKI (M2S1). BASED ON FITTING INTO EM MAP 1534.
Descriptor:TYPE-1 RESTRICTION ENZYME ECOKI SPECIFICITY PROTEIN, TYPE I RESTRICTION ENZYME ECOKI M PROTEIN, 5'-D(*GP*TP*TP*CP*AP*AP*CP*GP*TP*CP*GP*AP*CP*GP *TP*GP*CP*AP*AP*C)-3', ...
Authors:Kennaway, C.K., Obarska-Kosinska, A., White, J.H., Tuszynska, I., Cooper, L.P., Bujnicki, J.M., Trinick, J., Dryden, D.T.F.
Deposit date:2011-01-31
Release date:2011-02-09
Last modified:2019-10-23
Method:ELECTRON MICROSCOPY (18 Å)
Cite:The Structure of M.Ecoki Type I DNA Methyltransferase with a DNA Mimic Antirestriction Protein.
Nucleic Acids Res., 37, 2009
3FZV
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CRYSTAL STRUCTURE OF PA01 PROTEIN, PUTATIVE LYSR FAMILY TRANSCRIPTIONAL REGULATOR FROM PSEUDOMONAS AERUGINOSA
Descriptor:Probable transcriptional regulator, SULFATE ION
Authors:Knapik, A.A., Tkaczuk, K.L., Chruszcz, M., Wang, S., Zimmerman, M.D., Cymborowski, M., Skarina, T., Kagan, O., Savchenko, A., Edwards, A.M., Joachimiak, A., Bujnicki, J.M., Minor, W., Midwest Center for Structural Genomics (MCSG)
Deposit date:2009-01-26
Release date:2009-03-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Crystal structure of PA01 protein, putative LysR family transcriptional regulator from Pseudomonas aeruginosa
To be Published
3IST
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CRYSTAL STRUCTURE OF GLUTAMATE RACEMASE FROM LISTERIA MONOCYTOGENES IN COMPLEX WITH SUCCINIC ACID
Descriptor:Glutamate racemase, SUCCINIC ACID, CHLORIDE ION
Authors:Majorek, K.A., Chruszcz, M., Skarina, T., Onopriyenko, O., Stam, J., Anderson, W.F., Savchenko, A., Bujnicki, J.M., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2009-08-27
Release date:2009-09-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of glutamate racemase from Listeria monocytogenes in complex with succinic acid
TO BE PUBLISHED
3ISV
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CRYSTAL STRUCTURE OF GLUTAMATE RACEMASE FROM LISTERIA MONOCYTOGENES IN COMPLEX WITH ACETATE ION
Descriptor:Glutamate racemase, ACETATE ION, CALCIUM ION, ...
Authors:Majorek, K.A., Chruszcz, M., Skarina, T., Onopriyenko, O., Stam, J., Anderson, W.F., Savchenko, A., Bujnicki, J.M., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2009-08-27
Release date:2009-09-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of glutamate racemase from Listeria monocytogenes in complex with acetate ion
To be Published
3TLJ
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CRYSTAL STRUCTURE OF TRM14 FROM PYROCOCCUS FURIOSUS IN COMPLEX WITH S-ADENOSYL-L-HOMOCYSTEINE
Descriptor:tRNA (guanine N2-)-methyltransferase Trm14, S-ADENOSYL-L-HOMOCYSTEINE, ACETATE ION
Authors:Fislage, M., Roovers, M., Tuszynska, I., Bujnicki, J.M., Droogmans, L., Versees, W.
Deposit date:2011-08-30
Release date:2012-03-14
Last modified:2012-10-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of the tRNA:m2G6 methyltransferase Trm14/TrmN from two domains of life.
Nucleic Acids Res., 40, 2012
3TM4
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CRYSTAL STRUCTURE OF TRM14 FROM PYROCOCCUS FURIOSUS IN COMPLEX WITH S-ADENOSYLMETHIONINE
Descriptor:tRNA (guanine N2-)-methyltransferase Trm14, S-ADENOSYLMETHIONINE
Authors:Fislage, M., Roovers, M., Tuszynska, I., Bujnicki, J.M., Droogmans, L., Versees, W.
Deposit date:2011-08-31
Release date:2012-03-14
Last modified:2012-10-03
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structures of the tRNA:m2G6 methyltransferase Trm14/TrmN from two domains of life.
Nucleic Acids Res., 40, 2012
3TM5
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CRYSTAL STRUCTURE OF TRM14 FROM PYROCOCCUS FURIOSUS IN COMPLEX WITH SINEFUNGIN
Descriptor:Crystal structure of Trm14, SINEFUNGIN
Authors:Fislage, M., Roovers, M., Tuszynska, I., Bujnicki, J.M., Droogmans, L., Versees, W.
Deposit date:2011-08-31
Release date:2012-03-14
Last modified:2012-10-03
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Crystal structures of the tRNA:m2G6 methyltransferase Trm14/TrmN from two domains of life.
Nucleic Acids Res., 40, 2012
3TMA
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CRYSTAL STRUCTURE OF TRMN FROM THERMUS THERMOPHILUS
Descriptor:methyltransferase, PHOSPHATE ION
Authors:Fislage, M., Roovers, M., Tuszynska, I., Bujnicki, J.M., Droogmans, L., Versees, W.
Deposit date:2011-08-31
Release date:2012-03-14
Last modified:2012-10-03
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structures of the tRNA:m2G6 methyltransferase Trm14/TrmN from two domains of life.
Nucleic Acids Res., 40, 2012
4ESJ
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RESTRICTION ENDONUCLEASE DPNI IN COMPLEX WITH TARGET DNA
Descriptor:Type-2 restriction enzyme DpnI, DNA (5'-D(*CP*TP*GP*GP*(6MA)P*TP*CP*CP*AP*G)-3'), ZINC ION, ...
Authors:Siwek, W., Czapinska, H., Bochtler, M., Bujnicki, J.M., Skowronek, K.
Deposit date:2012-04-23
Release date:2012-06-13
Last modified:2012-10-17
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure and mechanism of action of the N6-methyladenine-dependent type IIM restriction endonuclease R.DpnI.
Nucleic Acids Res., 40, 2012
4HKQ
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XMRV REVERSE TRANSCRIPTASE IN COMPLEX WITH RNA/DNA HYBRID
Descriptor:Reverse transcriptase/ribonuclease H p80, RNA (5'-R(*AP*AP*CP*AP*GP*AP*GP*UP*GP*CP*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*CP*CP*AP*U)-3'), DNA (5'-D(*TP*GP*GP*AP*AP*TP*CP*A*GP*GP*TP*GP*TP*CP*GP*CP*AP*CP*TP*CP*TP*G)-3')
Authors:Nowak, E., Potrzebowski, W., Konarev, P.V., Rausch, J.W., Bona, M.K., Svergun, D.I., Bujnicki, J.M., Le Grice, S.F.J., Nowotny, M.
Deposit date:2012-10-15
Release date:2013-02-20
Last modified:2013-07-03
Method:X-RAY DIFFRACTION (3.04 Å)
Cite:Structural analysis of monomeric retroviral reverse transcriptase in complex with an RNA/DNA hybrid
Nucleic Acids Res., 41, 2013
4KYW
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RESTRICTION ENDONUCLEASE DPNI IN COMPLEX WITH TWO DNA MOLECULES
Descriptor:Type-2 restriction enzyme DpnI, 5'-(*DC*DTP*DGP*DGP*6MAP*DTP*DCP*DCP*DAP*DG)-3', ZINC ION, ...
Authors:Mierzejewska, K., Siwek, W., Czapinska, H., Skowronek, K., Bujnicki, J.M., Bochtler, M.
Deposit date:2013-05-29
Release date:2014-06-04
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis of the methylation specificity of R.DpnI.
Nucleic Acids Res., 42, 2014
4N48
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CAP-SPECIFIC MRNA (NUCLEOSIDE-2'-O-)-METHYLTRANSFERASE 1 PROTEIN IN COMPLEX WITH CAPPED RNA FRAGMENT
Descriptor:Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1, capped RNA, S-ADENOSYLMETHIONINE, ...
Authors:Smietanski, M., Werener, M., Purta, E., Kaminska, K.H., Stepinski, J., Darzynkiewicz, E., Nowotny, M., Bujnicki, J.M.
Deposit date:2013-10-08
Release date:2014-01-22
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.704 Å)
Cite:Structural analysis of human 2'-O-ribose methyltransferases involved in mRNA cap structure formation.
Nat Commun, 5, 2014
4N49
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CAP-SPECIFIC MRNA (NUCLEOSIDE-2'-O-)-METHYLTRANSFERASE 1 PROTEIN IN COMPLEX WITH M7GPPPG AND SAM
Descriptor:Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1, S-ADENOSYLMETHIONINE, 7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Smietanski, M., Werener, M., Purta, E., Kaminska, K.H., Stepinski, J., Darzynkiewicz, E., Nowotny, M., Bujnicki, J.M.
Deposit date:2013-10-08
Release date:2014-01-22
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural analysis of human 2'-O-ribose methyltransferases involved in mRNA cap structure formation.
Nat Commun, 5, 2014
4N4A
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CYSTAL STRUCTURE OF CAP-SPECIFIC MRNA (NUCLEOSIDE-2'-O-)-METHYLTRANSFERASE 1
Descriptor:Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1
Authors:Smietanski, M., Werener, M., Purta, E., Kaminska, K.H., Stepinski, J., Darzynkiewicz, E., Nowotny, M., Bujnicki, J.M.
Deposit date:2013-10-08
Release date:2014-01-22
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural analysis of human 2'-O-ribose methyltransferases involved in mRNA cap structure formation.
Nat Commun, 5, 2014
4OUN
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CRYSTAL STRUCTURE OF MINI-RIBONUCLEASE 3 FROM BACILLUS SUBTILIS
Descriptor:Mini-ribonuclease 3
Authors:Chojnowski, G., Czarnecka, J., Nowak, E., Pianka, D., Glow, D., Sabala, I., Skowronek, K., Nowotny, M., Bujnicki, J.M.
Deposit date:2014-02-18
Release date:2015-02-04
Last modified:2015-07-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Sequence-specific cleavage of dsRNA by Mini-III RNase
Nucleic Acids Res., 43, 2015
6FPT
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CRYSTAL STRUCTURE OF DANIO RERIO LIN41 FILAMIN-NHL DOMAINS
Descriptor:E3 ubiquitin-protein ligase TRIM71
Authors:Kumari, P., Aeschimann, F., Gaidatzis, D., Keusch, J.J., Ghosh, P., Neagu, A., Pachulska-Wieczorek, K., Bujnicki, J.M., Gut, H., Grosshans, H., Ciosk, R.
Deposit date:2018-02-12
Release date:2018-05-09
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Evolutionary plasticity of the NHL domain underlies distinct solutions to RNA recognition.
Nat Commun, 9, 2018
6FQ3
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CRYSTAL STRUCTURE OF DANIO RERIO LIN41 FILAMIN-NHL DOMAINS IN COMPLEX WITH LIN-29A 5'UTR 13MER RNA
Descriptor:E3 ubiquitin-protein ligase TRIM71, RNA (5'-R(*GP*GP*AP*GP*UP*CP*CP*AP*AP*CP*UP*CP*C)-3'), CHLORIDE ION
Authors:Kumari, P., Aeschimann, F., Gaidatzis, D., Keusch, J.J., Ghosh, P., Neagu, A., Pachulska-Wieczorek, K., Bujnicki, J.M., Gut, H., Grosshans, H., Ciosk, R.
Deposit date:2018-02-13
Release date:2018-05-09
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Evolutionary plasticity of the NHL domain underlies distinct solutions to RNA recognition.
Nat Commun, 9, 2018
6FQL
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CRYSTAL STRUCTURE OF DANIO RERIO LIN41 FILAMIN-NHL DOMAINS IN COMPLEX WITH MAB-10 3'UTR 13MER RNA
Descriptor:E3 ubiquitin-protein ligase TRIM71, RNA (5'-R(*UP*GP*CP*AP*UP*UP*UP*AP*AP*UP*GP*CP*A)-3'), CHLORIDE ION
Authors:Kumari, P., Aeschimann, F., Gaidatzis, D., Keusch, J.J., Ghosh, P., Neagu, A., Pachulska-Wieczorek, K., Bujnicki, J.M., Gut, H., Grosshans, H., Ciosk, R.
Deposit date:2018-02-14
Release date:2018-05-09
Method:X-RAY DIFFRACTION (2.349 Å)
Cite:Evolutionary plasticity of the NHL domain underlies distinct solutions to RNA recognition.
Nat Commun, 9, 2018
6G6S
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CRYSTAL STRUCTURE OF HUMAN ACINUS RNA RECOGNITION MOTIF DOMAIN
Descriptor:Apoptotic chromatin condensation inducer in the nucleus
Authors:Fernandes, H., Czapinska, H., Grudziaz, K., Bujnicki, J.M., Nowacka, M.
Deposit date:2018-04-03
Release date:2018-06-27
Last modified:2018-08-08
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of human Acinus RNA recognition motif domain.
PeerJ, 6, 2018
6IA2
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CRYSTAL STRUCTURE OF A SELF-COMPLEMENTARY RNA DUPLEX RECOGNIZED BY COM
Descriptor:RNA (5'-R(*AP*GP*AP*GP*AP*AP*CP*CP*CP*GP*GP*AP*GP*UP*UP*CP*CP*CP*U)-3'), CHLORIDE ION, SULFATE ION
Authors:Nowacka, M., Fernandes, H., Kiliszek, A., Bernat, A., Lach, G., Bujnicki, J.M.
Deposit date:2018-11-26
Release date:2019-03-27
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Specific interaction of zinc finger protein Com with RNA and the crystal structure of a self-complementary RNA duplex recognized by Com.
Plos One, 14, 2019
3C0K
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CRYSTAL STRUCTURE OF A RIBOSOMAL RNA METHYLTRANFERASE
Descriptor:UPF0064 protein yccW
Authors:Subramanian, S., Jayaraman, S., Bujnicki, J.
Deposit date:2008-01-21
Release date:2008-11-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the Escherichia coli 23S rRNA:m5C methyltransferase RlmI (YccW) reveals evolutionary links between RNA modification enzymes
J.Mol.Biol., 383, 2008
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