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8Q1B
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BU of 8q1b by Molmil
III2-IV1 respiratory supercomplex from S. pombe
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE, CALCIUM ION, CARDIOLIPIN, ...
Authors:Moe, A, Brzezinski, P.
Deposit date:2023-07-31
Release date:2023-11-15
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure and function of the S. pombe III-IV-cyt c supercomplex.
Proc.Natl.Acad.Sci.USA, 120, 2023
7Q21
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BU of 7q21 by Molmil
III2-IV2 respiratory supercomplex from Corynebacterium glutamicum
Descriptor: (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate, (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate, (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate, ...
Authors:Kovalova, T, Moe, A, Krol, S, Yanofsky, D.J, Bott, M, Sjostrand, D, Rubinstein, J.L, Hogbom, M, Brzezinski, P.
Deposit date:2021-10-22
Release date:2022-02-02
Last modified:2022-03-16
Method:ELECTRON MICROSCOPY (3 Å)
Cite:The respiratory supercomplex from C. glutamicum.
Structure, 30, 2022
6HWH
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BU of 6hwh by Molmil
Structure of a functional obligate respiratory supercomplex from Mycobacterium smegmatis
Descriptor: CARDIOLIPIN, COPPER (II) ION, Co-purified unknown peptide built as polyALA, ...
Authors:Wiseman, B, Nitharwal, R.G, Fedotovskaya, O, Schafer, J, Guo, H, Kuang, Q, Benlekbir, S, Sjostrand, D, Adelroth, P, Rubinstein, J.L, Brzezinski, P, Hogbom, M.
Deposit date:2018-10-12
Release date:2018-11-07
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure of a functional obligate complex III2IV2respiratory supercomplex from Mycobacterium smegmatis.
Nat. Struct. Mol. Biol., 25, 2018
1DY7
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BU of 1dy7 by Molmil
Cytochrome cd1 Nitrite Reductase, CO complex
Descriptor: CARBON MONOXIDE, GLYCEROL, HEME C, ...
Authors:Sjogren, T, Svensson-Ek, M, Hajdu, J, Brzezinski, P.
Deposit date:2000-01-28
Release date:2000-09-24
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Proton-Coupled Structural Changes Upon Binding of Carbon Monoxide to Cytochrome Cd(1): A Combined Flash Photolysis and X-Ray Crystallography Study
Biochemistry, 39, 2000
5NF8
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BU of 5nf8 by Molmil
Solution structure of detergent-solubilized Rcf1, a yeast mitochondrial inner membrane protein involved in respiratory Complex III/IV supercomplex formation
Descriptor: Respiratory supercomplex factor 1, mitochondrial
Authors:Zhou, S, Pettersson, P, Sjoholm, J, Sjostrand, D, Hogbom, M, Brzezinski, P, Maler, L, Adelroth, P.
Deposit date:2017-03-13
Release date:2018-02-28
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution NMR structure of yeast Rcf1, a protein involved in respiratory supercomplex formation.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5AE5
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BU of 5ae5 by Molmil
Structures of inactive and activated DntR provide conclusive evidence for the mechanism of action of LysR transcription factors
Descriptor: GLYCEROL, LYSR-TYPE REGULATORY PROTEIN
Authors:Lerche, M, Dian, C, Round, A, Lonneborg, R, Brzezinski, P, Leonard, G.A.
Deposit date:2015-08-25
Release date:2016-01-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.645 Å)
Cite:The Solution Configurations of Inactive and Activated Dntr Have Implications for the Sliding Dimer Mechanism of Lysr Transcription Factors.
Sci.Rep., 6, 2016
5AE4
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BU of 5ae4 by Molmil
Structures of inactive and activated DntR provide conclusive evidence for the mechanism of action of LysR transcription factors
Descriptor: LYSR-TYPE REGULATORY PROTEIN, THIOCYANATE ION
Authors:Lerche, M, Dian, C, Round, A, Lonneborg, R, Brzezinski, P, Leonard, G.A.
Deposit date:2015-08-25
Release date:2016-01-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:The Solution Configurations of Inactive and Activated Dntr Have Implications for the Sliding Dimer Mechanism of Lysr Transcription Factors.
Sci.Rep., 6, 2016
1UTB
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BU of 1utb by Molmil
DntR from Burkholderia sp. strain DNT
Descriptor: ACETATE ION, GLYCEROL, LYSR-TYPE REGULATORY PROTEIN
Authors:Smirnova, I.A, Dian, C, Leonard, G.A, McSweeney, S, Birse, D, Brzezinski, P.
Deposit date:2003-12-05
Release date:2004-07-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Development of a Bacterial Biosensor for Nitrotoluenes: The Crystal Structure of the Transcriptional Regulator Dntr
J.Mol.Biol., 340, 2004
1UTH
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BU of 1uth by Molmil
DntR from Burkholderia sp. strain DNT in complex with Thiocyanate
Descriptor: LYSR-TYPE REGULATORY PROTEIN, THIOCYANATE ION
Authors:Smirnova, I.A, Dian, C, Leonard, G.A, McSweeney, S, Birse, D, Brzezinski, P.
Deposit date:2003-12-09
Release date:2004-07-01
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Development of a Bacterial Biosensor for Nitrotoluenes: The Crystal Structure of the Transcriptional Regulator Dntr
J.Mol.Biol., 340, 2004
2UYF
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BU of 2uyf by Molmil
Single mutant F111L DntR from Burkholderia sp. strain DNT in complex with thiocyanate
Descriptor: ACETATE ION, GLYCEROL, REGULATORY PROTEIN, ...
Authors:Lonneborg, R, Smirova, I, Dian, C, Leonard, G.A, Mcsweeney, S, Brzezinski, P.
Deposit date:2007-04-04
Release date:2007-08-21
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:In Vivo and in Vitro Investigation of Transcriptional Regulation by Dntr.
J.Mol.Biol., 372, 2007
2UYE
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BU of 2uye by Molmil
Double mutant Y110S,F111V DntR from Burkholderia sp. strain DNT in complex with thiocyanate
Descriptor: GLYCEROL, REGULATORY PROTEIN, THIOCYANATE ION
Authors:Lonneborg, R, Smirova, I, Dian, C, leonard, G.A, McSweeney, S, Brzezinski, P.
Deposit date:2007-04-04
Release date:2007-08-21
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:In Vivo and in Vitro Investigation of Transcriptional Regulation by Dntr.
J.Mol.Biol., 372, 2007
8C8Q
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BU of 8c8q by Molmil
Cytochrome c oxidase from Schizosaccharomyces pombe
Descriptor: CALCIUM ION, COPPER (II) ION, Cytochrome c oxidase polypeptide 5, ...
Authors:Moe, A, Adelroth, P, Brzezinski, P, Nasvik Ojemyr, L.
Deposit date:2023-01-20
Release date:2023-03-01
Method:ELECTRON MICROSCOPY (3.36 Å)
Cite:Cryo-EM structure and function of S. pombe complex IV with bound respiratory supercomplex factor.
Commun Chem, 6, 2023
2Y7W
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BU of 2y7w by Molmil
DntR Inducer Binding Domain
Descriptor: 2-HYDROXYBENZOIC ACID, LYSR-TYPE REGULATORY PROTEIN, TETRAETHYLENE GLYCOL
Authors:Devesse, L, Smirnova, I, Lonneborg, R, Kapp, U, Brzezinski, P, Leonard, G.A, Dian, C.
Deposit date:2011-02-02
Release date:2011-07-20
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:Crystal Structures of Dntr Inducer Binding Domains in Complex with Salicylate Offer Insights Into the Activation of Lysr-Type Transcriptional Regulators.
Mol.Microbiol., 81, 2011
2Y7K
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BU of 2y7k by Molmil
DntR Inducer Binding Domain in Complex with Salicylate. Monoclinic crystal form
Descriptor: 2-HYDROXYBENZOIC ACID, LYSR-TYPE REGULATORY PROTEIN
Authors:Devesse, L, Smirnova, I, Lonneborg, R, Kapp, U, Brzezinski, P, Leonard, G.A, Dian, C.
Deposit date:2011-01-31
Release date:2011-07-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal Structures of Dntr Inducer Binding Domains in Complex with Salicylate Offer Insights Into the Activation of Lysr-Type Transcriptional Regulators.
Mol.Microbiol., 81, 2011
2Y7P
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BU of 2y7p by Molmil
DntR Inducer Binding Domain in Complex with Salicylate. Trigonal crystal form
Descriptor: 2,5,8,11,14,17,20,23,26,29,32,35,38,41,44,47,50,53,56,59,62,65,68,71,74,77,80-HEPTACOSAOXADOOCTACONTAN-82-OL, 2-HYDROXYBENZOIC ACID, LYSR-TYPE REGULATORY PROTEIN
Authors:Devesse, L, Smirnova, I, Lonneborg, R, Kapp, U, Brzezinski, P, Leonard, G.A, Dian, C.
Deposit date:2011-02-01
Release date:2011-07-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal Structures of Dntr Inducer Binding Domains in Complex with Salicylate Offer Insights Into the Activation of Lysr-Type Transcriptional Regulators.
Mol.Microbiol., 81, 2011
2Y84
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BU of 2y84 by Molmil
DntR Inducer Binding Domain
Descriptor: GLYCEROL, LYSR-TYPE REGULATORY PROTEIN
Authors:Devesse, L, Smirnova, I, Lonneborg, R, Kapp, U, Brzezinski, P, Leonard, G.A, Dian, C.
Deposit date:2011-02-03
Release date:2011-07-20
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structures of Dntr Inducer Binding Domains in Complex with Salicylate Offer Insights Into the Activation of Lysr-Type Transcriptional Regulators.
Mol.Microbiol., 81, 2011
2Y7R
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BU of 2y7r by Molmil
DntR Inducer Binding Domain
Descriptor: LYSR-TYPE REGULATORY PROTEIN
Authors:Devesse, L, Smirnova, I, Lonneborg, R, Kapp, U, Brzezinski, P, Leonard, G.A, Dian, C.
Deposit date:2011-02-01
Release date:2011-12-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Crystal Structures of Dntr Inducer Binding Domains in Complex with Salicylate Offer Insights Into the Activation of Lysr-Type Transcriptional Regulators.
Mol.Microbiol., 81, 2011
6ZDB
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BU of 6zdb by Molmil
NMR structural analysis of yeast Cox13 reveals its C-terminus in interaction with ATP
Descriptor: Cytochrome c oxidase subunit 13, mitochondrial
Authors:Shu, Z, Pontus, P, Peter, B, Lena, M, Pia, A.
Deposit date:2020-06-14
Release date:2021-05-19
Method:SOLUTION NMR
Cite:NMR structural analysis of the yeast cytochrome c oxidase subunit Cox13 and its interaction with ATP.
Bmc Biol., 19, 2021
8SNH
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BU of 8snh by Molmil
cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa
Descriptor: (2R)-2-(methoxymethyl)-4-{[(25R)-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside, CALCIUM ION, COPPER (II) ION, ...
Authors:Di Trani, J.M, Rubinstein, J.L.
Deposit date:2023-04-27
Release date:2023-10-11
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structure of the bc 1 - cbb 3 respiratory supercomplex from Pseudomonas aeruginosa.
Proc.Natl.Acad.Sci.USA, 120, 2023
8SMR
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BU of 8smr by Molmil
cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa
Descriptor: (2R)-2-(methoxymethyl)-4-{[(25R)-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside, CALCIUM ION, COPPER (II) ION, ...
Authors:Di Trani, J.M, Rubinstein, J.L.
Deposit date:2023-04-26
Release date:2023-10-11
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structure of the bc 1 - cbb 3 respiratory supercomplex from Pseudomonas aeruginosa.
Proc.Natl.Acad.Sci.USA, 120, 2023
3GZC
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BU of 3gzc by Molmil
Structure of human selenocysteine lyase
Descriptor: (5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE, Selenocysteine lyase
Authors:Collins, R, Hogbom, M, Arrowsmith, C, Berglund, H, Edwards, A, Ehn, M, Flodin, S, Flores, A, Graslund, S, Hallberg, B.M, Hammarstrom, M, Karlberg, T, Kotenyova, T, Nilsson-Ehle, P, Nordlund, P, Nyman, T, Ogg, D, Persson, C, Sagemark, J, Stenmark, P, Sundstrom, M, Thorsell, A.G, Uppenberg, J, Van Den Berg, S, Weigelt, J, Holmberg-Schiavone, L, Schuler, H, Structural Genomics Consortium (SGC)
Deposit date:2009-04-07
Release date:2009-04-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Biochemical discrimination between selenium and sulfur 1: a single residue provides selenium specificity to human selenocysteine lyase.
Plos One, 7, 2012
8E9H
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BU of 8e9h by Molmil
Mycobacterial respiratory complex I, fully-inserted quinone
Descriptor: (2R)-3-{[(R)-hydroxy({(1S,2R,3R,4R,5S,6S)-3,4,5-trihydroxy-2-(alpha-D-mannopyranosyloxy)-6-[(6-O-undecanoyl-beta-D-mannopyranosyl)oxy]cyclohexyl}oxy)phosphoryl]oxy}-2-(octanoyloxy)propyl undecanoate, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ...
Authors:Liang, Y, Rubinstein, J.L.
Deposit date:2022-08-26
Release date:2022-10-12
Last modified:2023-04-05
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structure of mycobacterial respiratory complex I.
Proc.Natl.Acad.Sci.USA, 120, 2023
8E9G
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BU of 8e9g by Molmil
Mycobacterial respiratory complex I with both quinone positions modelled
Descriptor: (2R)-3-{[(R)-hydroxy({(1S,2R,3R,4R,5S,6S)-3,4,5-trihydroxy-2-(alpha-D-mannopyranosyloxy)-6-[(6-O-undecanoyl-beta-D-mannopyranosyl)oxy]cyclohexyl}oxy)phosphoryl]oxy}-2-(octanoyloxy)propyl undecanoate, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ...
Authors:Liang, Y, Rubinstein, J.L.
Deposit date:2022-08-26
Release date:2022-10-12
Last modified:2023-04-05
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Structure of mycobacterial respiratory complex I.
Proc.Natl.Acad.Sci.USA, 120, 2023
8E9I
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BU of 8e9i by Molmil
Mycobacterial respiratory complex I, semi-inserted quinone
Descriptor: (2R)-3-{[(R)-hydroxy({(1S,2R,3R,4R,5S,6S)-3,4,5-trihydroxy-2-(alpha-D-mannopyranosyloxy)-6-[(6-O-undecanoyl-beta-D-mannopyranosyl)oxy]cyclohexyl}oxy)phosphoryl]oxy}-2-(octanoyloxy)propyl undecanoate, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ...
Authors:Liang, Y, Rubinstein, J.L.
Deposit date:2022-08-26
Release date:2022-10-12
Last modified:2023-04-05
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structure of mycobacterial respiratory complex I.
Proc.Natl.Acad.Sci.USA, 120, 2023
6LUL
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BU of 6lul by Molmil
NMR structure and dynamics studies of yeast respiratory super-complex factor 2 in micelles
Descriptor: Respiratory supercomplex factor 2, mitochondrial
Authors:Zhou, S, Pontus, P, Peter, B, Maler, L, Adelroth, P.
Deposit date:2020-01-29
Release date:2020-10-07
Last modified:2021-03-24
Method:SOLUTION NMR
Cite:NMR Structure and Dynamics Studies of Yeast Respiratory Supercomplex Factor 2.
Structure, 29, 2021

 

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