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4U3Q
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BU of 4u3q by Molmil
Crystal Structure of Recombinant TP0435 from Treponema pallidum
Descriptor: 17 kDa lipoprotein
Authors:Brautigam, C.A, Deka, R.K, Norgard, M.V.
Deposit date:2014-07-22
Release date:2014-10-22
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Insights into the potential function and membrane organization of the TP0435 (Tp17) lipoprotein from Treponema pallidum derived from structural and biophysical analyses.
Protein Sci., 24, 2015
8FIR
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BU of 8fir by Molmil
Crystal structure of TpPta, a phosphotransacetylase from Treponema pallidum
Descriptor: 1,2-ETHANEDIOL, CITRIC ACID, Phosphate acetyltransferase
Authors:Brautigam, C.A, Norgard, M.V, Deka, R.K.
Deposit date:2022-12-16
Release date:2023-05-31
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Biophysical and biochemical studies support TP0094 as a phosphotransacetylase in an acetogenic energy-conservation pathway in Treponema pallidum.
Plos One, 18, 2023
5JX2
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BU of 5jx2 by Molmil
Crystal structure of MglB-2 (Tp0684) from Treponema pallidum
Descriptor: 1,2-ETHANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, ...
Authors:Brautigam, C.A, Deka, R.K, Norgard, M.V.
Deposit date:2016-05-12
Release date:2016-08-31
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.0504 Å)
Cite:The Tp0684 (MglB-2) Lipoprotein of Treponema pallidum: A Glucose-Binding Protein with Divergent Topology.
Plos One, 11, 2016
1QSL
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BU of 1qsl by Molmil
KLENOW FRAGMENT COMPLEXED WITH SINGLE-STRANDED SUBSTRATE AND EUROPIUM (III) ION
Descriptor: 5'-D(*GP*CP*TP*TP*AP*CP*GP*C)-3', DNA POLYMERASE I, EUROPIUM ION
Authors:Brautigam, C.A, Aschheim, K, Steitz, T.A.
Deposit date:1999-06-22
Release date:1999-06-30
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural elucidation of the binding and inhibitory properties of lanthanide (III) ions at the 3'-5' exonucleolytic active site of the Klenow fragment
Chem.Biol., 6, 1999
4DI3
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BU of 4di3 by Molmil
Crystal structure of a 2:1 complex of Treponema pallidum TatP(T) (Tp0957) bound to TatT (Tp0956)
Descriptor: TatP(T) (Tp0957), TatT (Tp0956)
Authors:Brautigam, C.A, Deka, R.K, Norgard, M.V.
Deposit date:2012-01-30
Release date:2012-05-23
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Structural and Thermodynamic Characterization of the Interaction between Two Periplasmic Treponema pallidum Lipoproteins that are Components of a TPR-Protein-Associated TRAP Transporter (TPAT).
J.Mol.Biol., 420, 2012
4DI4
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BU of 4di4 by Molmil
Crystal structure of a 3:1 complex of Treponema pallidum TatP(T) (Tp0957) bound to TatT (Tp0956)
Descriptor: TETRAETHYLENE GLYCOL, TRIETHYLENE GLYCOL, TatP(T) (Tp0957), ...
Authors:Brautigam, C.A, Deka, R.K, Norgard, M.V.
Deposit date:2012-01-30
Release date:2012-05-23
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.714 Å)
Cite:Structural and Thermodynamic Characterization of the Interaction between Two Periplasmic Treponema pallidum Lipoproteins that are Components of a TPR-Protein-Associated TRAP Transporter (TPAT).
J.Mol.Biol., 420, 2012
1PX2
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BU of 1px2 by Molmil
Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP (Form 1)
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, Synapsin I
Authors:Brautigam, C.A, Chelliah, Y, Deisenhofer, J.
Deposit date:2003-07-02
Release date:2004-03-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Tetramerization and ATP binding by a protein comprising the A, B, and C domains of rat synapsin I.
J.Biol.Chem., 279, 2004
1PK8
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BU of 1pk8 by Molmil
Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, ...
Authors:Brautigam, C.A, Chelliah, Y, Deisenhofer, J.
Deposit date:2003-06-05
Release date:2004-03-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Tetramerization and ATP binding by a protein comprising the A, B, and C domains of rat synapsin I.
J.Biol.Chem., 279, 2004
1U3C
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BU of 1u3c by Molmil
Crystal Structure of the PHR domain of Cryptochrome 1 from Arabidopsis thaliana
Descriptor: CHLORIDE ION, Cryptochrome 1 apoprotein, ETHYL DIMETHYL AMMONIO PROPANE SULFONATE, ...
Authors:Brautigam, C.A, Smith, B.S, Ma, Z, Palnitkar, M, Tomchick, D.R, Machius, M, Deisenhofer, J.
Deposit date:2004-07-21
Release date:2004-08-24
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of the photolyase-like domain of cryptochrome 1 from Arabidopsis thaliana.
Proc.Natl.Acad.Sci.USA, 101, 2004
1U3D
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BU of 1u3d by Molmil
Crystal Structure of the PHR domain of Cryptochrome 1 from Arabidopsis thaliana with AMPPNP bound
Descriptor: CHLORIDE ION, Cryptochrome 1 apoprotein, ETHYL DIMETHYL AMMONIO PROPANE SULFONATE, ...
Authors:Brautigam, C.A, Smith, B.S, Ma, Z, Palnitkar, M, Tomchick, D.R, Machius, M, Deisenhofer, J.
Deposit date:2004-07-21
Release date:2004-08-24
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structure of the photolyase-like domain of cryptochrome 1 from Arabidopsis thaliana.
Proc.Natl.Acad.Sci.USA, 101, 2004
1KFS
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BU of 1kfs by Molmil
DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) MUTANT/DNA COMPLEX
Descriptor: DNA (5'-D(*GP*CP*TP*TP*AP*CP*G)-3'), MAGNESIUM ION, PROTEIN (DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7)), ...
Authors:Brautigam, C.A, Steitz, T.A.
Deposit date:1997-08-18
Release date:1998-02-25
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural principles for the inhibition of the 3'-5' exonuclease activity of Escherichia coli DNA polymerase I by phosphorothioates.
J.Mol.Biol., 277, 1998
1KSP
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BU of 1ksp by Molmil
DNA polymerase I Klenow fragment (E.C.2.7.7.7) mutant/DNA complex
Descriptor: DNA (5'-D(P*TP*TP*PST)-3'), PROTEIN (DNA POLYMERASE I-KLENOW FRAGMENT (E.C.2.7.7.7)), ZINC ION
Authors:Brautigam, C.A, Steitz, T.A.
Deposit date:1997-08-19
Release date:1998-02-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural principles for the inhibition of the 3'-5' exonuclease activity of Escherichia coli DNA polymerase I by phosphorothioates.
J.Mol.Biol., 277, 1998
1KRP
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BU of 1krp by Molmil
DNA polymerase I Klenow fragment (E.C.2.7.7.7) mutant/DNA complex
Descriptor: DNA (5'-D(P*TP*TP*PST)-3'), PROTEIN (DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7)), ZINC ION
Authors:Brautigam, C.A, Steitz, T.A.
Deposit date:1997-08-19
Release date:1998-02-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural principles for the inhibition of the 3'-5' exonuclease activity of Escherichia coli DNA polymerase I by phosphorothioates.
J.Mol.Biol., 277, 1998
2KFZ
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BU of 2kfz by Molmil
KLENOW FRAGMENT WITH BRIDGING-SULFUR SUBSTRATE AND ZINC ONLY
Descriptor: 5'-D(*GP*CP*TP*TP*AP*(US1)P*G)-3', KLENOW FRAGMENT OF DNA POLYMERASE I, MAGNESIUM ION, ...
Authors:Brautigam, C.A, Sun, S, Piccirilli, J.A, Steitz, T.A.
Deposit date:1998-07-02
Release date:1998-11-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Structures of normal single-stranded DNA and deoxyribo-3'-S-phosphorothiolates bound to the 3'-5' exonucleolytic active site of DNA polymerase I from Escherichia coli.
Biochemistry, 38, 1999
2KFN
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BU of 2kfn by Molmil
KLENOW FRAGMENT WITH BRIDGING-SULFUR SUBSTRATE AND MANGANESE
Descriptor: 5'-D(*GP*CP*TP*TP*AP*(US1)P*G)-3', KLENOW FRAGMENT OF DNA POLYMERASE I, MAGNESIUM ION, ...
Authors:Brautigam, C.A, Sun, S, Piccirilli, J.A, Steitz, T.A.
Deposit date:1998-07-01
Release date:1998-11-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Structures of normal single-stranded DNA and deoxyribo-3'-S-phosphorothiolates bound to the 3'-5' exonucleolytic active site of DNA polymerase I from Escherichia coli.
Biochemistry, 38, 1999
2KZZ
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BU of 2kzz by Molmil
KLENOW FRAGMENT WITH NORMAL SUBSTRATE AND ZINC ONLY
Descriptor: DNA (5'-D(*GP*CP*TP*T*AP*CP*G)-3'), PROTEIN (DNA POLYMERASE I), ZINC ION
Authors:Brautigam, C.A, Sun, S, Piccirilli, J.A, Steitz, T.A.
Deposit date:1998-07-07
Release date:1999-12-14
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structures of normal single-stranded DNA and deoxyribo-3'-S-phosphorothiolates bound to the 3'-5' exonucleolytic active site of DNA polymerase I from Escherichia coli.
Biochemistry, 38, 1999
2KZM
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BU of 2kzm by Molmil
KLENOW FRAGMENT WITH NORMAL SUBSTRATE AND ZINC AND MANGANESE
Descriptor: DNA (5'-D(*GP*CP*TP*TP*A*CP*GP*C)-3'), MANGANESE (II) ION, PROTEIN (DNA POLYMERASE I), ...
Authors:Brautigam, C.A, Sun, S, Piccirilli, J.A, Steitz, T.A.
Deposit date:1998-07-03
Release date:1999-02-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structures of normal single-stranded DNA and deoxyribo-3'-S-phosphorothiolates bound to the 3'-5' exonucleolytic active site of DNA polymerase I from Escherichia coli.
Biochemistry, 38, 1999
5U2P
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BU of 5u2p by Molmil
The crystal structure of Tp0737 from Treponema pallidum
Descriptor: 1,2-ETHANEDIOL, BROMIDE ION, CHLORIDE ION, ...
Authors:Brautigam, C.A, Deka, R.K, Tomchick, D.R, Norgard, M.V.
Deposit date:2016-11-30
Release date:2017-02-22
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Functional clues from the crystal structure of an orphan periplasmic ligand-binding protein from Treponema pallidum.
Protein Sci., 26, 2017
3PJN
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BU of 3pjn by Molmil
The crystal structure of Tp34 bound to Zn(II) ion at pH 7.5
Descriptor: 1,2-ETHANEDIOL, 34 kDa membrane antigen, SULFATE ION, ...
Authors:Brautigam, C.A, Deka, R.K, Tomchick, D.R, Machius, M, Norgard, M.V.
Deposit date:2010-11-10
Release date:2011-11-02
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Characterization of the Tp34 lipoprotein from Treponema pallidum suggests a role in transition metal homeostasis
To be Published
3PJL
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BU of 3pjl by Molmil
The crystal structure of Tp34 bound to Co (II) ion at pH 7.5
Descriptor: 1,2-ETHANEDIOL, 34 kDa membrane antigen, COBALT (II) ION, ...
Authors:Brautigam, C.A, Deka, R.K, Tomchick, D.R, Machius, M, Norgard, M.V.
Deposit date:2010-11-10
Release date:2011-11-02
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Characterization of the Tp34 lipoprotein from Treponema pallidum suggests a role in transition metal homeostasis
To be Published
3RNM
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BU of 3rnm by Molmil
The crystal structure of the subunit binding of human dihydrolipoamide transacylase (E2b) bound to human dihydrolipoamide dehydrogenase (E3)
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, BETA-MERCAPTOETHANOL, Dihydrolipoyl dehydrogenase, ...
Authors:Brautigam, C.A, Wynn, R.M, Chuang, J.C, Young, B.B, Chuang, D.T.
Deposit date:2011-04-22
Release date:2011-05-04
Last modified:2011-07-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural and Thermodynamic Basis for Weak Interactions between Dihydrolipoamide Dehydrogenase and Subunit-binding Domain of the Branched-chain {alpha}-Ketoacid Dehydrogenase Complex.
J.Biol.Chem., 286, 2011
1ZMD
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BU of 1zmd by Molmil
Crystal Structure of Human dihydrolipoamide dehydrogenase complexed to NADH
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Dihydrolipoyl dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Brautigam, C.A, Chuang, J.L, Tomchick, D.R, Machius, M, Chuang, D.T.
Deposit date:2005-05-10
Release date:2005-06-28
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Crystal Structure of Human Dihydrolipoamide Dehydrogenase: NAD+/NADH Binding and the Structural Basis of Disease-causing Mutations
J.Mol.Biol., 350, 2005
1ZMC
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BU of 1zmc by Molmil
Crystal Structure of Human dihydrolipoamide dehydrogenase complexed to NAD+
Descriptor: Dihydrolipoyl dehydrogenase, mitochondrial, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Brautigam, C.A, Chuang, J.L, Tomchick, D.R, Machius, M, Chuang, D.T.
Deposit date:2005-05-10
Release date:2005-06-28
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Crystal Structure of Human Dihydrolipoamide Dehydrogenase: NAD(+)/NADH Binding and the Structural Basis of Disease-causing Mutations
J.Mol.Biol., 350, 2005
6BGD
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BU of 6bgd by Molmil
The crystal structure of the W145A variant of TpMglB-2 (Tp0684) with bound ligand
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Glucose/galactose-binding lipoprotein
Authors:Brautigam, C.A, Norgard, M.V, Deka, R.K.
Deposit date:2017-10-27
Release date:2018-01-31
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Crystal structures of MglB-2 (TP0684), a topologically variant d-glucose-binding protein from Treponema pallidum, reveal a ligand-induced conformational change.
Protein Sci., 27, 2018
6BGC
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BU of 6bgc by Molmil
The crystal structure of the W145A variant of TpMglB-2 (Tp0684) with bound glucose
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Glucose/galactose-binding lipoprotein, ...
Authors:Brautigam, C.A, Norgard, M.V, Deka, R.K.
Deposit date:2017-10-27
Release date:2018-01-31
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.082 Å)
Cite:Crystal structures of MglB-2 (TP0684), a topologically variant d-glucose-binding protein from Treponema pallidum, reveal a ligand-induced conformational change.
Protein Sci., 27, 2018

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