Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8YQ4
DownloadVisualize
BU of 8yq4 by Molmil
Structure of mBaoJin2
Descriptor: CHLORIDE ION, GLYCEROL, SULFATE ION, ...
Authors:Boyko, K.M, Nikolaeva, A.Y, Minyaev, M.E, Kuzmicheva, T.P, Vlaskina, A.V, Popov, V.O, Pyatkevich, K.D, Subach, F.V.
Deposit date:2024-03-19
Release date:2024-03-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of mBaoJin2
To Be Published
7Z79
DownloadVisualize
BU of 7z79 by Molmil
Crystal structure of aminotransferase-like protein from Variovorax paradoxus
Descriptor: Aminotransferase, class 4, DI(HYDROXYETHYL)ETHER, ...
Authors:Boyko, K.M, Matyuta, I.O, Nikolaeva, A.Y, Khrenova, M.G, Rakitina, T.V, Popov, V.O, Bezsudnova, E.Y.
Deposit date:2022-03-15
Release date:2022-04-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A Puzzling Protein from Variovorax paradoxus Has a PLP Fold Type IV Transaminase Structure and Binds PLP without Catalytic Lysine
Crystals, 12, 2022
5IJG
DownloadVisualize
BU of 5ijg by Molmil
Crystal structure of O-acetylhomoserine sulfhydrolase from Brucella melitensis at 2.0 A resolution
Descriptor: Cys/Met metabolism pyridoxal-phosphate-dependent enzyme, GLYCEROL, PYRIDOXAL-5'-PHOSPHATE
Authors:Boyko, K.M, Nikolaeva, A.Y, Koolikova, V.V, Kotlov, M.I, Demidkina, T.V, Popov, V.O.
Deposit date:2016-03-02
Release date:2017-04-05
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of O-acetylhomoserine sulfhydrolase from Brucella melitensis at 2.0 A resolution
To Be Published
6H65
DownloadVisualize
BU of 6h65 by Molmil
Crystal structure of the branched-chain-amino-acid aminotransferase from Haliangium ochraceum
Descriptor: Branched-chain-amino-acid aminotransferase, PYRIDOXAL-5'-PHOSPHATE
Authors:Boyko, K.M, Timofeev, V.I, Bezsudnova, E.Y, Nikolaeva, A.Y, Rakitina, T.V, Popov, V.O.
Deposit date:2018-07-26
Release date:2018-10-10
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal structure of the branched-chain-amino-acid aminotransferase from Haliangium ochraceum
To Be Published
6THQ
DownloadVisualize
BU of 6thq by Molmil
Crystal structure of branched-chain aminotransferase from thermophilic archaea Thermoproteus uzoniensis with norvaline
Descriptor: 2-[O-PHOSPHONOPYRIDOXYL]-AMINO-PENTANOIC ACID, Branched-chain-amino-acid aminotransferase, PYRIDOXAL-5'-PHOSPHATE
Authors:Boyko, K.M, Nikolaeva, A.Y, Bezsudnova, E.Y, Popov, V.O.
Deposit date:2019-11-21
Release date:2020-09-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Three-Dimensional Structure of Branched-Chain Amino Acid Transaminase from Thermoproteus uzoniensis in Complex with L-Norvaline
Crystallography Reports, 2020
6TTB
DownloadVisualize
BU of 6ttb by Molmil
Crystal structure of NAD-dependent formate dehydrogenase from Staphylococcus aureus in complex with NAD
Descriptor: Formate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Boyko, K.M, Pometun, A.A, Nikolaeva, A.Y, Kargov, I.S, Yurchenko, T.S, Savin, S.S, Popov, V.O, Tishkov, V.I.
Deposit date:2019-12-26
Release date:2021-01-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of NAD-dependent formate dehydrogenase from Staphylococcus aureus in complex with NAD
To Be Published
8AAB
DownloadVisualize
BU of 8aab by Molmil
S148F mutant of blue-to-red fluorescent timer mRubyFT
Descriptor: mRubyFT S148F mutant of blue-to-red fluorescent timer
Authors:Boyko, K.M, Nikolaeva, A.Y, Vlaskina, A.V, Dorovatovskii, P.V, Subach, O.M, Popov, V.O, Subach, F.V.
Deposit date:2022-06-30
Release date:2022-08-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:mRubyFT/S147I, a mutant of blue-to-red fluorescent timer
Crystallography Reports, 2022
7Q6B
DownloadVisualize
BU of 7q6b by Molmil
mRubyFT/S148I, a mutant of blue-to-red fluorescent timer in its blue state
Descriptor: mRubyFT S148I, a mutant of blue-to-red fluorescent timer
Authors:Boyko, K.M, Nikolaeva, A.Y, Vlaskina, A.V, Dorovatovskii, P.V, Khrenova, M.G, Subach, O.M, Popov, V.O, Subach, F.M.
Deposit date:2021-11-06
Release date:2023-04-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Combined Structural and Computational Study of the mRubyFT Fluorescent Timer Locked in Its Blue Form.
Int J Mol Sci, 24, 2023
6ER1
DownloadVisualize
BU of 6er1 by Molmil
Crystal structure of BTB-domain of CP190 from D.melanogaster at high resolution
Descriptor: Centrosome-associated zinc finger protein CP190, PHOSPHATE ION
Authors:Boyko, K.M, Nikolaeva, A.Y, Bonchuk, A.N, Kachalova, G.S, Georgiev, P.G, Popov, V.O.
Deposit date:2017-10-16
Release date:2018-08-29
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Purification, Isolation, Crystallization, and Preliminary X-ray Diffraction Study of the BTB Domain of the Centrosomal Protein 190 from Drosophila Melanogaster
Crystallography Reports, 62, 2017
5L8Z
DownloadVisualize
BU of 5l8z by Molmil
Structure of thermostable DNA-binding HU protein from micoplasma Spiroplasma melliferum
Descriptor: DNA-binding protein, SODIUM ION
Authors:Boyko, K.M, Gorbacheva, M.A, Rakitina, T.V, Korzhenevskiy, D.A, Kamashev, D.E, Vanyushkina, A.A, Lipkin, A.V, Popov, V.O.
Deposit date:2016-06-09
Release date:2016-06-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural basis of the high thermal stability of the histone-like HU protein from the mollicute Spiroplasma melliferum KC3.
Sci Rep, 6, 2016
4H05
DownloadVisualize
BU of 4h05 by Molmil
Crystal structure of aminoglycoside-3'-phosphotransferase of type VIII
Descriptor: Aminoglycoside-O-phosphotransferase VIII
Authors:Boyko, K.M, Gorbacheva, M.A, Danilenko, V.N, Alekseeva, M.G, Korzhenevskiy, D.A, Dorovatovskiy, P.V, Lipkin, A.V, Popov, V.O.
Deposit date:2012-09-07
Release date:2014-04-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural characterization of the novel aminoglycoside phosphotransferase AphVIII from Streptomyces rimosus with enzymatic activity modulated by phosphorylation.
Biochem.Biophys.Res.Commun., 477, 2016
4HGX
DownloadVisualize
BU of 4hgx by Molmil
Crystal structure of xylose isomerase domain containing protein (stm4435) from salmonella typhimurium lt2 with unknown ligand
Descriptor: ACETATE ION, Xylose isomerase domain containing protein, ZINC ION
Authors:Boyko, K.M, Gorbacheva, M.A, Korzhenevskiy, D.A, Dorovatovsky, P.V, Rakitina, T.V, Lipkin, A.V, Shumilin, I.A, Minor, W, Popov, V.O.
Deposit date:2012-10-09
Release date:2012-10-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of xylose isomerase domain containing protein (stm4435) from salmonella typhimurium lt2 with unknown ligand
To be Published
4HX0
DownloadVisualize
BU of 4hx0 by Molmil
Crystal structure of a putative nucleotidyltransferase (TM1012) from Thermotoga maritima at 1.87 A resolution
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,4-BUTANEDIOL, Putative nucleotidyltransferase TM1012, ...
Authors:Boyko, K.M, Gorbacheva, M.A, Korzhenevskiy, D.A, Lipkin, A.V, Popov, V.O, Kovalchuk, M.V, Shumilin, I.A, Minor, W, Shabalin, I.G, Golubev, A.M.
Deposit date:2012-11-09
Release date:2013-09-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Crystal structure of putative nucleotidyltransferase with two MPD molecules in the active site.
To be Published
4NPA
DownloadVisualize
BU of 4npa by Molmil
Scrystal structure of protein with unknown function from Vibrio cholerae at P22121 spacegroup
Descriptor: DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, Putative uncharacterized protein, ...
Authors:Boyko, K.M, Gorbacheva, M.A, Rakitina, T.V, Korgenevsky, D.A, Dorovatovsky, P.V, Lipkin, A.V, Minor, W, Shumilin, I.A, Popov, V.O.
Deposit date:2013-11-21
Release date:2013-12-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of protein with unknown function from Vibrio cholerae at P22121 spacegroup
To be Published
4NPO
DownloadVisualize
BU of 4npo by Molmil
Crystal structure of protein with unknown function from Deinococcus radiodurans at P61 spacegroup
Descriptor: ACETATE ION, ACETYL GROUP, GLYCEROL, ...
Authors:Boyko, K.M, Gorbacheva, M.A, Rakitina, T.V, Korgenevsky, D.A, Shabalin, I.G, Shumilin, I.A, Dorovatovsky, P.V, Lipkin, A.V, Popov, V.O.
Deposit date:2013-11-22
Release date:2013-12-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Crystal structure of protein with unknown function at P61 spacegroup
To be Published
4NS4
DownloadVisualize
BU of 4ns4 by Molmil
Crystal structure of cold-active estarase from Psychrobacter cryohalolentis K5T
Descriptor: Alpha/beta hydrolase fold protein
Authors:Boyko, K.M, Petrovskaya, L.E, Gorbacheva, M.A, Korgenevsky, D.A, Novototskaya-Vlasova, K.A, Rivkina, E.M, Dolgikh, D.A, Kirpichnikov, M.P, Lipkin, A.V, Popov, V.O.
Deposit date:2013-11-28
Release date:2015-01-07
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Three-dimentional structure of an esterse from Psychrobacter cryohalolentis K5T provides clues to unusual thermostability of a cold-active enzyme
To be Published
6ZHK
DownloadVisualize
BU of 6zhk by Molmil
Crystal structure of adenosylmethionine-8-amino-7-oxononanoate aminotransferase from Methanocaldococcus jannaschii DSM 2661
Descriptor: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, MAGNESIUM ION
Authors:Boyko, K.M, Nikolaeva, T.N, Stekhanova, T.N, Rakitina, T.V, Bezsudnova, E.Y, Popov, V.O.
Deposit date:2020-06-23
Release date:2020-07-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Three-Dimensional Structure of Thermostable D-Amino Acid Transaminase from the Archaeon Methanocaldococcus jannaschii DSM 2661
Crystallography Reports, 2021
7B1X
DownloadVisualize
BU of 7b1x by Molmil
Crystal structure of cold-active esterase PMGL3 from permafrost metagenomic library
Descriptor: esterase PMGL3
Authors:Boyko, K.M, Nikolaeva, A.Y, Petrovskaya, L.E, Kryukova, M.V, Kryukova, E.A, Korzhenevsky, D.A, Lomakina, G.Y, Novototskaya-Vlasova, K.A, Rivkina, E.M, Dolgikh, D.A, Kirpichnikov, M.P, Popov, V.O.
Deposit date:2020-11-25
Release date:2021-11-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural and Biochemical Characterization of a Cold-Active PMGL3 Esterase with Unusual Oligomeric Structure.
Biomolecules, 11, 2021
6QIN
DownloadVisualize
BU of 6qin by Molmil
CRYSTAL STRUCTURE OF THE PMGL2 ESTERASE FROM PERMAFROST METAGENOMIC LIBRARY
Descriptor: CHLORIDE ION, MAGNESIUM ION, PMGL2
Authors:Boyko, K.M, Nikolaeva, A.Y, Korzhenevskiy, D.A, Kryukova, M.V, Petrovskaya, L.E, Novototskaya-Vlasova, K.A, Rivkina, E.M, Dolgikh, D.A, Kirpichnikov, M.P, Popov, V.O.
Deposit date:2019-01-21
Release date:2019-12-25
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of PMGL2 esterase from the hormone-sensitive lipase family with GCSAG motif around the catalytic serine.
Plos One, 15, 2020
6QLA
DownloadVisualize
BU of 6qla by Molmil
CRYSTAL STRUCTURE OF THE PMGL2 ESTERASE (point mutant 1) FROM PERMAFROST METAGENOMIC LIBRARY
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Boyko, K.M, Garsia, D, Nikolaeva, A.Y, Korzhenevskiy, D.A, Kryukova, M.V, Petrovskaya, L.E, Novototskaya-Vlasova, K.A, Rivkina, E.M, Dolgikh, D.A, Kirpichnikov, M.P, Popov, V.O.
Deposit date:2019-01-31
Release date:2019-12-25
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Crystal structure of PMGL2 esterase from the hormone-sensitive lipase family with GCSAG motif around the catalytic serine.
Plos One, 15, 2020
5CE8
DownloadVisualize
BU of 5ce8 by Molmil
Crystal structure of branched-chain aminotransferase from thermophilic archaea Thermoproteus uzoniensis
Descriptor: Branched-chain amino acid aminotransferase, DI(HYDROXYETHYL)ETHER, PYRIDOXAL-5'-PHOSPHATE
Authors:Boyko, K.M, Nikolaeva, A.Y, Stekhanova, T.N, Mardanov, A.V, Rakitin, A.L, Ravin, N.V, Popov, V.O.
Deposit date:2015-07-06
Release date:2016-02-24
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:First structure of archaeal branched-chain amino acid aminotransferase from Thermoproteus uzoniensis specific for L-amino acids and R-amines.
Extremophiles, 20, 2016
8PEI
DownloadVisualize
BU of 8pei by Molmil
Crystal structure of the biphotochromic fluorescent protein SAASoti (C21N/V127T variant) in its green on-state
Descriptor: C21N/V127T form of the biphotochromic fluorescent protein SAASoti
Authors:Boyko, K.M, Varfolomeeva, L.A, Matyuta, I.O, Gavshina, A.V, Solovyev, I.D, Popov, V.O, Savitsky, A.P.
Deposit date:2023-06-14
Release date:2024-01-17
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of the biphotochromic fluorescent protein C21N/V127T SAASoti in its green on-state
To Be Published
7QGK
DownloadVisualize
BU of 7qgk by Molmil
The mRubyFT protein, Genetically Encoded Blue-to-Red Fluorescent Timer in its red state
Descriptor: MAGNESIUM ION, The red form of the mRubyFT protein, Genetically Encoded Blue-to-Red Fluorescent Timer
Authors:Boyko, K.M, Nikolaeva, A.Y, Gaivoronskii, F.A, Vlaskina, A.V, Subach, O.M, Popov, V.O, Subach, F.V.
Deposit date:2021-12-08
Release date:2022-03-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The mRubyFT Protein, Genetically Encoded Blue-to-Red Fluorescent Timer.
Int J Mol Sci, 23, 2022
6FUC
DownloadVisualize
BU of 6fuc by Molmil
Structure of aminoglycoside phosphotransferase APH(3'')-Id from Streptomyces rimosus ATCC10970
Descriptor: Aminoglycoside phosphotransferase
Authors:Boyko, K.M, Nikolaeva, A.Y, Korzhenevskiy, D.A, Alekseeva, M.G, Mavletova, D.A, Zakharevich, N.V, Rudakova, N.N, Danilenko, V.N, Popov, V.O.
Deposit date:2018-02-26
Release date:2019-03-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Identification, functional and structural characterization of novel aminoglycoside phosphotransferase APH(3′′)-Id from Streptomyces rimosus subsp. rimosus ATCC 10970.
Arch.Biochem.Biophys., 671, 2019
6FUX
DownloadVisualize
BU of 6fux by Molmil
Structure of aminoglycoside phosphotransferase APH(3'')-Id from Streptomyces rimosus ATCC10970 in complex with ADP and streptomycin
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Aminoglycoside phosphotransferase, GLYCEROL, ...
Authors:Boyko, K.M, Nikolaeva, A.Y, Korzhenevskiy, D.A, Alekseeva, M.G, Mavletova, D.A, Zakharevich, N.V, Rudakova, N.N, Danilenko, V.N, Popov, V.O.
Deposit date:2018-02-28
Release date:2019-03-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Identification, functional and structural characterization of novel aminoglycoside phosphotransferase APH(3′′)-Id from Streptomyces rimosus subsp. rimosus ATCC 10970.
Arch.Biochem.Biophys., 671, 2019

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon