Author results

4H05
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CRYSTAL STRUCTURE OF AMINOGLYCOSIDE-3'-PHOSPHOTRANSFERASE OF TYPE VIII
Descriptor:Aminoglycoside-O-phosphotransferase VIII
Authors:Boyko, K.M., Gorbacheva, M.A., Danilenko, V.N., Alekseeva, M.G., Korzhenevskiy, D.A., Dorovatovskiy, P.V., Lipkin, A.V., Popov, V.O.
Deposit date:2012-09-07
Release date:2014-04-09
Last modified:2017-09-20
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural characterization of the novel aminoglycoside phosphotransferase AphVIII from Streptomyces rimosus with enzymatic activity modulated by phosphorylation.
Biochem.Biophys.Res.Commun., 477, 2016
4HGX
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CRYSTAL STRUCTURE OF XYLOSE ISOMERASE DOMAIN CONTAINING PROTEIN (STM4435) FROM SALMONELLA TYPHIMURIUM LT2 WITH UNKNOWN LIGAND
Descriptor:Xylose isomerase domain containing protein, ZINC ION, ACETATE ION
Authors:Boyko, K.M., Gorbacheva, M.A., Korzhenevskiy, D.A., Dorovatovsky, P.V., Rakitina, T.V., Lipkin, A.V., Shumilin, I.A., Minor, W., Popov, V.O.
Deposit date:2012-10-09
Release date:2012-10-24
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of xylose isomerase domain containing protein (stm4435) from salmonella typhimurium lt2 with unknown ligand
To be Published
4HX0
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CRYSTAL STRUCTURE OF A PUTATIVE NUCLEOTIDYLTRANSFERASE (TM1012) FROM THERMOTOGA MARITIMA AT 1.87 A RESOLUTION
Descriptor:Putative nucleotidyltransferase TM1012, SODIUM ION, (4S)-2-METHYL-2,4-PENTANEDIOL, ...
Authors:Boyko, K.M., Gorbacheva, M.A., Korzhenevskiy, D.A., Lipkin, A.V., Popov, V.O., Kovalchuk, M.V., Shumilin, I.A., Minor, W., Shabalin, I.G., Golubev, A.M.
Deposit date:2012-11-09
Release date:2013-09-11
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Crystal structure of putative nucleotidyltransferase with two MPD molecules in the active site.
To be Published
4N1V
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STRUCTURE OF DNA-BINDING PROTEIN HU FROM MICOPLASMA SPIROPLASMA MELLIFERUM
Descriptor:DNA-binding protein HU-beta
Authors:Boyko, K.M., Gorbacheva, M.A., Rakitina, T.V., Korgenevsky, D.A., Kamashev, D.E., Vanyushkina, A.A., Lipkin, A.V., Popov, V.O.
Deposit date:2013-10-04
Release date:2014-11-12
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Structure of micoplasma DNA binding HU protein.
To be Published
4NPA
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SCRYSTAL STRUCTURE OF PROTEIN WITH UNKNOWN FUNCTION FROM VIBRIO CHOLERAE AT P22121 SPACEGROUP
Descriptor:Putative uncharacterized protein, SULFATE ION, PHOSPHATE ION, ...
Authors:Boyko, K.M., Gorbacheva, M.A., Rakitina, T.V., Korgenevsky, D.A., Dorovatovsky, P.V., Lipkin, A.V., Minor, W., Shumilin, I.A., Popov, V.O.
Deposit date:2013-11-21
Release date:2013-12-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of protein with unknown function from Vibrio cholerae at P22121 spacegroup
To be Published
4NPO
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CRYSTAL STRUCTURE OF PROTEIN WITH UNKNOWN FUNCTION FROM DEINOCOCCUS RADIODURANS AT P61 SPACEGROUP
Descriptor:Uncharacterized protein, ACETATE ION, GLYCEROL, ...
Authors:Boyko, K.M., Gorbacheva, M.A., Rakitina, T.V., Korgenevsky, D.A., Shabalin, I.G., Shumilin, I.A., Dorovatovsky, P.V., Lipkin, A.V., Popov, V.O.
Deposit date:2013-11-22
Release date:2013-12-11
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Crystal structure of protein with unknown function at P61 spacegroup
To be Published
4NS4
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CRYSTAL STRUCTURE OF COLD-ACTIVE ESTARASE FROM PSYCHROBACTER CRYOHALOLENTIS K5T
Descriptor:Alpha/beta hydrolase fold protein
Authors:Boyko, K.M., Petrovskaya, L.E., Gorbacheva, M.A., Korgenevsky, D.A., Novototskaya-Vlasova, K.A., Rivkina, E.M., Dolgikh, D.A., Kirpichnikov, M.P., Lipkin, A.V., Popov, V.O.
Deposit date:2013-11-28
Release date:2015-01-07
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Three-dimentional structure of an esterse from Psychrobacter cryohalolentis K5T provides clues to unusual thermostability of a cold-active enzyme
To be Published
5CE8
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CRYSTAL STRUCTURE OF BRANCHED-CHAIN AMINOTRANSFERASE FROM THERMOPHILIC ARCHAEA THERMOPROTEUS UZONIENSIS
Descriptor:Branched-chain amino acid aminotransferase, PYRIDOXAL-5'-PHOSPHATE, DI(HYDROXYETHYL)ETHER
Authors:Boyko, K.M., Nikolaeva, A.Y., Stekhanova, T.N., Mardanov, A.V., Rakitin, A.L., Ravin, N.V., Popov, V.O.
Deposit date:2015-07-06
Release date:2016-02-24
Last modified:2016-03-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:First structure of archaeal branched-chain amino acid aminotransferase from Thermoproteus uzoniensis specific for L-amino acids and R-amines.
Extremophiles, 20, 2016
5CM0
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CRYSTAL STRUCTURE OF BRANCHED-CHAIN AMINOTRANSFERASE FROM THERMOPHILIC ARCHAEA GEOGLOBUS ACETIVORANS
Descriptor:Branched-chain transaminase, PYRIDOXAL-5'-PHOSPHATE, GLYCEROL
Authors:Boyko, K.M., Nikolaeva, A.Y., Stekhanova, T.N., Mardanov, A.V., Rakitin, A.L., Ravin, N.V., Popov, V.O.
Deposit date:2015-07-16
Release date:2016-09-14
Last modified:2017-03-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of branched-chain aminotransferase from thermophilic archaea Geoglobus acetivorans.
To Be Published
5E25
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CRYSTAL STRUCTURE OF BRANCHED-CHAIN AMINOTRANSFERASE FROM THERMOPHILIC ARCHAEA GEOGLOBUS ACETIVORANS COMPLEXED WITH ALPHA-KETOGLUTARATE
Descriptor:branched-chain aminotransferase, PYRIDOXAL-5'-PHOSPHATE, 2-OXOGLUTARIC ACID
Authors:Boyko, K.M., Nikolaeva, A.Y., Stekhanova, T.N., Mardanov, A.V., Rakitin, A.L., Ravin, N.V., Popov, V.O.
Deposit date:2015-09-30
Release date:2016-10-05
Last modified:2017-03-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of branched-chain aminotransferase from thermophilic archaea Geoglobus acetivorans complexed with alpha-ketoglutarate.
To Be Published
5IJG
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CRYSTAL STRUCTURE OF O-ACETYLHOMOSERINE SULFHYDROLASE FROM BRUCELLA MELITENSIS AT 2.0 A RESOLUTION
Descriptor:Cys/Met metabolism pyridoxal-phosphate-dependent enzyme, PYRIDOXAL-5'-PHOSPHATE, GLYCEROL
Authors:Boyko, K.M., Nikolaeva, A.Y., Koolikova, V.V., Kotlov, M.I., Demidkina, T.V., Popov, V.O.
Deposit date:2016-03-02
Release date:2017-04-05
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of O-acetylhomoserine sulfhydrolase from Brucella melitensis at 2.0 A resolution
To Be Published
5L8Z
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STRUCTURE OF THERMOSTABLE DNA-BINDING HU PROTEIN FROM MICOPLASMA SPIROPLASMA MELLIFERUM
Descriptor:DNA-binding protein, SODIUM ION
Authors:Boyko, K.M., Gorbacheva, M.A., Rakitina, T.V., Korzhenevskiy, D.A., Kamashev, D.E., Vanyushkina, A.A., Lipkin, A.V., Popov, V.O.
Deposit date:2016-06-09
Release date:2016-06-22
Last modified:2017-04-12
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural basis of the high thermal stability of the histone-like HU protein from the mollicute Spiroplasma melliferum KC3.
Sci Rep, 6, 2016
6ER1
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CRYSTAL STRUCTURE OF BTB-DOMAIN OF CP190 FROM D.MELANOGASTER AT HIGH RESOLUTION
Descriptor:Centrosome-associated zinc finger protein CP190, PHOSPHATE ION
Authors:Boyko, K.M., Nikolaeva, A.Y., Bonchuk, A.N., Kachalova, G.S., Georgiev, P.G., Popov, V.O.
Deposit date:2017-10-16
Release date:2018-08-29
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Purification, Isolation, Crystallization, and Preliminary X-ray Diffraction Study of the BTB Domain of the Centrosomal Protein 190 from Drosophila Melanogaster
Crystallography Reports, 62, 2017
6H65
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CRYSTAL STRUCTURE OF THE BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE FROM HALIANGIUM OCHRACEUM
Descriptor:Branched-chain-amino-acid aminotransferase, PYRIDOXAL-5'-PHOSPHATE
Authors:Boyko, K.M., Timofeev, V.I., Bezsudnova, E.Y., Nikolaeva, A.Y., Rakitina, T.V., Popov, V.O.
Deposit date:2018-07-26
Release date:2018-10-10
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal structure of the branched-chain-amino-acid aminotransferase from Haliangium ochraceum
To Be Published
3TN7
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CRYSTAL STRUCTURE OF SHORT-CHAIN ALCOHOL DEHYDROGENASE FROM HYPERTHERMOPHILIC ARCHAEON THERMOCOCCUS SIBIRICUS COMPLEXED WITH 5-HYDROXY-NADP
Descriptor:Short-chain alcohol dehydrogenase, 5-hydroxy-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, GLYCEROL
Authors:Boyko, K.M., Polyakov, K.M., Bezsudnova, E.Y., Stekhanova, T.N., Gumerov, V.M., Mardanov, A.V., Ravin, N.V., Skryabin, K.G., Kovalchuk, M.V., Popov, V.O.
Deposit date:2011-09-01
Release date:2012-08-15
Last modified:2012-12-19
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Structural insight into the molecular basis of polyextremophilicity of short-chain alcohol dehydrogenase from the hyperthermophilic archaeon Thermococcus sibiricus.
Biochimie, 94, 2012
5MWC
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CRYSTAL STRUCTURE OF THE GENETICALLY-ENCODED GREEN CALCIUM INDICATOR NTNC IN ITS CALCIUM BOUND STATE
Descriptor:genetically-encoded green calcium indicator NTnC, CALCIUM ION
Authors:Boyko, K.M., Nikolaeva, A.Y., Korzhenevskiy, D.A., Rakitina, T.V., Popov, V.O., Subach, O.M., Barykina, N.V., Subach, F.V.
Deposit date:2017-01-18
Release date:2018-02-14
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Enchanced variant of genetically-encoded green calcium indicator NTnC
To Be Published
6ERK
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CRYSTAL STRUCTURE OF DIAMINOPELARGONIC ACID AMINOTRANSFERASE FROM PSYCHROBACTER CRYOHALOLENTIS
Descriptor:Aminotransferase, SULFATE ION, 1,2-ETHANEDIOL, ...
Authors:Boyko, K.M., Nikolaeva, A.Y., Bezsudnova, E.Y., Stekhanova, T.N., Rakitina, T.V., Popov, V.O.
Deposit date:2017-10-18
Release date:2018-09-26
Last modified:2018-11-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Diaminopelargonic acid transaminase from Psychrobacter cryohalolentis is active towards (S)-(-)-1-phenylethylamine, aldehydes and alpha-diketones.
Appl. Microbiol. Biotechnol., 102, 2018
6ET6
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CRYSTAL STRUCTURE OF MURAMIDASE FROM ACINETOBACTER BAUMANNII AB 5075UW PROPHAGE
Descriptor:Lysozyme, SULFATE ION, GLYCEROL
Authors:Boyko, K.M., Nikolaeva, A.Y., Sykilinda, N.N., Shneider, M.M., Miroshnikov, K.A., Popov, V.O.
Deposit date:2017-10-25
Release date:2018-09-05
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structure of anAcinetobacterBroad-Range Prophage Endolysin Reveals a C-Terminal alpha-Helix with the Proposed Role in Activity against Live Bacterial Cells.
Viruses, 10, 2018
6FUC
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STRUCTURE OF AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(3'')-ID FROM STREPTOMYCES RIMOSUS ATCC10970
Descriptor:Aminoglycoside phosphotransferase
Authors:Boyko, K.M., Nikolaeva, A.Y., Korzhenevskiy, D.A., Alekseeva, M.G., Mavletova, D.A., Zakharevich, N.V., Rudakova, N.N., Danilenko, V.N., Popov, V.O.
Deposit date:2018-02-26
Release date:2019-03-20
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Structure of aminoglycoside phosphotransferase APH(3'')-Id from Streptomyces rimosus ATCC10970
To Be Published
6FUX
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STRUCTURE OF AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(3'')-ID FROM STREPTOMYCES RIMOSUS ATCC10970 IN COMPLEX WITH ADP AND STREPTOMYCIN
Descriptor:Aminoglycoside phosphotransferase, GLYCEROL, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Boyko, K.M., Nikolaeva, A.Y., Korzhenevskiy, D.A., Alekseeva, M.G., Mavletova, D.A., Zakharevich, N.V., Rudakova, N.N., Danilenko, V.N., Popov, V.O.
Deposit date:2018-02-28
Release date:2019-03-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structure of aminoglycoside phosphotransferase APH(3'')-Id from Streptomyces rimosus ATCC10970 in complex with ADP and streptomycin
To Be Published
6GKR
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CRYSTAL STRUCTURE OF BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE FROM THERMOBACULUM TERRENUM IN PLP-FORM (HOLO-FORM)
Descriptor:Branched-chain-amino-acid aminotransferase, PYRIDOXAL-5'-PHOSPHATE, ACETATE ION, ...
Authors:Boyko, K.M., Bezsudnova, E.Y., Nikolaeva, A.Y., Zeifman, Y.S., Rakitina, T.V., Popov, V.O.
Deposit date:2018-05-21
Release date:2018-09-26
Last modified:2019-01-23
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Biochemical and structural insights into PLP fold type IV transaminase from Thermobaculum terrenum.
Biochimie, 158, 2018
6Q8E
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CRYSTAL STRUCTURE OF BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE FROM THERMOBACULUM TERRENUM IN PMP-FORM
Descriptor:Branched-chain-amino-acid aminotransferase, 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, CHLORIDE ION
Authors:Boyko, K.M., Bezsudnova, E.Y., Nikolaeva, A.Y., Zeifman, Y.S., Rakitina, T.V., Popov, V.O.
Deposit date:2018-12-14
Release date:2019-01-02
Last modified:2019-01-23
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Biochemical and structural insights into PLP fold type IV transaminase from Thermobaculum terrenum.
Biochimie, 158, 2018
2OT4
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STRUCTURE OF A HEXAMERIC MULTIHEME C NITRITE REDUCTASE FROM THE EXTREMOPHILE BACTERIUM THIOLKALIVIBRIO NITRATIREDUCENS
Descriptor:Eight-heme nitrite reductase, CALCIUM ION, HEME C, ...
Authors:Polyakov, K.M., Boyko, K.M., Slutsky, A., Tikhonova, T.V., Antipov, A.N., Zvyagilskaya, R.A., Popov, A.N., Lamzin, V.S., Bourenkov, G.P., Popov, V.O.
Deposit date:2007-02-07
Release date:2008-04-08
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:High-resolution structural analysis of a novel octaheme cytochrome c nitrite reductase from the haloalkaliphilic bacterium Thioalkalivibrio nitratireducens.
J.Mol.Biol., 389, 2009
2ZO5
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STRUCTURE OF THE THIOALKALIVIBRIO NITRATIREDUCENS CYTOCHROME C NITRITE REDUCTASE IN A COMPLEX WITH AZIDE
Descriptor:Eight-heme nitrite reductase, HEME C, AZIDE ION, ...
Authors:Polyakov, K.M., Boyko, K.M., Slutsky, A., Tikhonova, T.V., Antipov, A.N., Zvyagilskaya, R.A., Popov, A.N., Lamzin, V.S., Bourenkov, G.P., Popov, V.O.
Deposit date:2008-05-05
Release date:2009-05-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:High-resolution structural analysis of a novel octaheme cytochrome c nitrite reductase from the haloalkaliphilic bacterium Thioalkalivibrio nitratireducens
J.Mol.Biol., 389, 2009
3D1I
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STRUCTURE OF THE THIOALKALIVIBRIO NITRATIREDUCENS CYTOCHROME C NITRITE REDUCTASE IN A COMPLEX WITH NITRITE
Descriptor:Eight-heme nitrite reductase, HEME C, CALCIUM ION, ...
Authors:Polyakov, K.M., Boyko, K.M., Slutsky, A., Tikhonova, T.V., Antipov, A.N., Zvyagilskaya, R.A., Popov, A.N., Lamzin, V.S., Bourenkov, G.P., Popov, V.O.
Deposit date:2008-05-06
Release date:2009-05-12
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:High-resolution structural analysis of a novel octaheme cytochrome c nitrite reductase from the haloalkaliphilic bacterium Thioalkalivibrio nitratireducens
J.Mol.Biol., 389, 2009
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