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1MQZ
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BU of 1mqz by Molmil
NMR solution structure of type-B lantibiotics mersacidin bound to lipid II in DPC micelles
Descriptor: LANTIBIOTIC MERSACIDIN
Authors:Hsu, S.-T, Breukink, E, Bierbaum, G, Sahl, H.-G, de Kruijff, B, Kaptein, R, van Nuland, N.A, Bonvin, A.M.
Deposit date:2002-09-17
Release date:2003-03-11
Last modified:2018-08-08
Method:SOLUTION NMR
Cite:NMR Study of Mersacidin and Lipid II Interaction in Dodecylphosphocholine Micelles. Conformational Changes are a Key to Antimicrobial Activity
J.Biol.Chem., 278, 2003
1MQY
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BU of 1mqy by Molmil
NMR solution structure of type-B lantibiotics mersacidin in DPC micelles
Descriptor: LANTIBIOTIC MERSACIDIN
Authors:Hsu, S.-T, Breukink, E, Bierbaum, G, Sahl, H.-G, de Kruijff, B, Kaptein, R, van Nuland, N.A, Bonvin, A.M.
Deposit date:2002-09-17
Release date:2003-03-11
Last modified:2018-08-08
Method:SOLUTION NMR
Cite:NMR Study of Mersacidin and Lipid II Interaction in Dodecylphosphocholine Micelles. Conformational Changes are a Key to Antimicrobial Activity
J.Biol.Chem., 278, 2003
1MQX
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BU of 1mqx by Molmil
NMR Solution Structure of Type-B Lantibiotics Mersacidin in MeOH/H2O Mixture
Descriptor: LANTIBIOTIC MERSACIDIN
Authors:Hsu, S.-T, Breukink, E, Bierbaum, G, Sahl, H.-G, de Kruijff, B, Kaptein, R, van Nuland, N.A, Bonvin, A.M.
Deposit date:2002-09-17
Release date:2003-03-11
Last modified:2018-08-08
Method:SOLUTION NMR
Cite:NMR Study of Mersacidin and Lipid II Interaction in Dodecylphosphocholine Micelles. Conformational Changes are a Key to Antimicrobial Activity
J.Biol.Chem., 278, 2003
1Z0Q
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BU of 1z0q by Molmil
Aqueous Solution Structure of the Alzheimer's Disease Abeta Peptide (1-42)
Descriptor: Alzheimer's disease amyloid
Authors:Tomaselli, S, Esposito, V, Vangone, P, van Nuland, N.A, Bonvin, A.M, Guerrini, R, Tancredi, T, Temussi, P.A, Picone, D.
Deposit date:2005-03-02
Release date:2006-05-23
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:The alpha-to-beta Conformational Transition of Alzheimer's Abeta-(1-42) Peptide in Aqueous Media is Reversible: A Step by Step Conformational Analysis Suggests the Location of beta Conformation Seeding
Chembiochem, 7, 2006
2ERV
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BU of 2erv by Molmil
Crystal structure of the outer membrane enzyme PagL
Descriptor: CALCIUM ION, PENTAETHYLENE GLYCOL MONODECYL ETHER, hypothetical protein Paer03002360
Authors:Rutten, L, Geurtsen, J, Lambert, W, Smolenaers, J.J, Bonvin, A.M, van der Ley, P, Egmond, M.R, Gros, P, Tommassen, J.
Deposit date:2005-10-25
Release date:2006-04-11
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure and catalytic mechanism of the LPS 3-O-deacylase PagL from Pseudomonas aeruginosa.
Proc.Natl.Acad.Sci.USA, 103, 2006
2FYL
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BU of 2fyl by Molmil
Haddock model of the complex between double module of LRP, CR56, and first domain of receptor associated protein, RAP-d1.
Descriptor: Alpha-2-macroglobulin receptor-associated protein, CALCIUM ION, Low-density lipoprotein receptor-related protein 1
Authors:Jensen, G.A, Andersen, O.M, Bonvin, A.M, Bjerrum-Bohr, I, Etzerodt, M, O'shea, C, Poulsen, F.M, Kragelund, B.B.
Deposit date:2006-02-08
Release date:2006-10-10
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Binding Site Structure of One LRP-RAP Complex:Implications for a Common Ligand-Receptor Binding Motif.
J.Mol.Biol., 362, 2006
2FYJ
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BU of 2fyj by Molmil
NMR Solution structure of calcium-loaded LRP double module
Descriptor: Low-density lipoprotein receptor-related protein 1
Authors:Jensen, G.A, Andersen, O.M, Bonvin, A.M, Bjerrum-Bohr, I, Etzerodt, M, O'shea, C, Poulsen, F.M, Kragelund, B.B.
Deposit date:2006-02-08
Release date:2006-10-10
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Binding Site Structure of One LRP-RAP Complex:Implications for a Common Ligand-Receptor Binding Motif.
J.Mol.Biol., 362, 2006
1CCM
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BU of 1ccm by Molmil
DIRECT NOE REFINEMENT OF CRAMBIN FROM 2D NMR DATA USING A SLOW-COOLING ANNEALING PROTOCOL
Descriptor: CRAMBIN
Authors:Bonvin, A.M.J.J, Rullmann, J.A.C, Lamerichs, R.M.J.N, Boelens, R, Kaptein, R.
Deposit date:1993-04-14
Release date:1993-10-31
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:"Ensemble" iterative relaxation matrix approach: a new NMR refinement protocol applied to the solution structure of crambin.
Proteins, 15, 1993
1ARR
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BU of 1arr by Molmil
RELAXATION MATRIX REFINEMENT OF THE SOLUTION STRUCTURE OF THE ARC REPRESSOR
Descriptor: ARC REPRESSOR
Authors:Bonvin, A.M.J.J, Vis, H, Burgering, M.J.M, Breg, J.N, Boelens, R, Kaptein, R.
Deposit date:1993-08-24
Release date:1994-01-31
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Nuclear magnetic resonance solution structure of the Arc repressor using relaxation matrix calculations.
J.Mol.Biol., 236, 1994
1ARQ
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BU of 1arq by Molmil
RELAXATION MATRIX REFINEMENT OF THE SOLUTION STRUCTURE OF THE ARC REPRESSOR
Descriptor: ARC REPRESSOR
Authors:Bonvin, A.M.J.J, Vis, H, Burgering, M.J.M, Breg, J.N, Boelens, R, Kaptein, R.
Deposit date:1993-08-24
Release date:1994-01-31
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Nuclear magnetic resonance solution structure of the Arc repressor using relaxation matrix calculations.
J.Mol.Biol., 236, 1994
1CJG
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BU of 1cjg by Molmil
NMR STRUCTURE OF LAC REPRESSOR HP62-DNA COMPLEX
Descriptor: DNA (5'-D(*GP*AP*AP*TP*TP*GP*TP*GP*AP*GP*CP*GP*CP*TP*CP*AP*CP*AP*AP*TP*TP*C)-3'), PROTEIN (LAC REPRESSOR)
Authors:Spronk, C.A.E.M, Bonvin, A.M.J.J, Radha, P.K, Melacini, G, Boelens, R, Kaptein, R.
Deposit date:1999-04-14
Release date:2000-01-01
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:The solution structure of Lac repressor headpiece 62 complexed to a symmetrical lac operator.
Structure Fold.Des., 7, 1999
1WCO
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BU of 1wco by Molmil
The solution structure of the nisin-lipid II complex
Descriptor: (2E,6E)-12-fluoro-11-(fluoromethyl)-3,7-dimethyldodeca-2,6,10-trien-1-yl trihydrogen diphosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-alpha-muramic acid, ALA-FGA-LYS-DAL-DAL PEPTIDE, ...
Authors:Hsu, S.-T.D, Breukink, E, Tischenko, E, Lutters, M.A.G, de Kruijff, B, Kaptein, R, Bonvin, A.M.J.J, van Nuland, N.A.J.
Deposit date:2004-11-19
Release date:2005-03-07
Last modified:2020-07-29
Method:SOLUTION NMR
Cite:The nisin-lipid II complex reveals a pyrophosphate cage that provides a blueprint for novel antibiotics.
Nat. Struct. Mol. Biol., 11, 2004
1LQC
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BU of 1lqc by Molmil
LAC REPRESSOR HEADPIECE (RESIDUES 1-56), NMR, 32 STRUCTURES
Descriptor: LAC REPRESSOR
Authors:Slijper, M, Bonvin, A.M.J.J, Boelens, R, Kaptein, R.
Deposit date:1996-08-13
Release date:1997-02-12
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Refined structure of lac repressor headpiece (1-56) determined by relaxation matrix calculations from 2D and 3D NOE data: change of tertiary structure upon binding to the lac operator.
J.Mol.Biol., 259, 1996
1EFA
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BU of 1efa by Molmil
CRYSTAL STRUCTURE OF THE LAC REPRESSOR DIMER BOUND TO OPERATOR AND THE ANTI-INDUCER ONPF
Descriptor: 2-nitrophenyl beta-D-fucopyranoside, DNA (5'-D(*GP*AP*AP*T*TP*GP*TP*GP*AP*GP*CP*GP*CP*TP*CP*AP*CP*AP*AP*TP*T)-3'), LAC REPRESSOR
Authors:Bell, C.E, Lewis, M.
Deposit date:2000-02-07
Release date:2000-03-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A closer view of the conformation of the Lac repressor bound to operator.
Nat.Struct.Biol., 7, 2000
1HRA
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BU of 1hra by Molmil
THE SOLUTION STRUCTURE OF THE HUMAN RETINOIC ACID RECEPTOR-BETA DNA-BINDING DOMAIN
Descriptor: RETINOIC ACID RECEPTOR, ZINC ION
Authors:Knegtel, R.M.A, Katahira, M, Schilthuis, J.G, Bonvin, A.M.J.J, Boelens, R, Eib, D, Van Der Saag, P.T, Kaptein, R.
Deposit date:1993-07-25
Release date:1994-01-31
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:The solution structure of the human retinoic acid receptor-beta DNA-binding domain.
J.Biomol.NMR, 3, 1993
1OSL
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BU of 1osl by Molmil
Solution structure of a dimeric lactose DNA-binding domain complexed to a nonspecific DNA sequence
Descriptor: 5'-D(*CP*GP*AP*TP*AP*AP*GP*AP*TP*AP*TP*CP*TP*TP*AP*TP*CP*G)-3', Lactose operon repressor
Authors:Kalodimos, C.G, Bonvin, A.M.J.J, Boelens, R, Kaptein, R.
Deposit date:2003-03-20
Release date:2004-05-04
Last modified:2021-10-27
Method:SOLUTION NMR
Cite:Structure and flexibility adaptation in nonspecific and specific protein-DNA complexes.
Science, 305, 2004
1L1M
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BU of 1l1m by Molmil
SOLUTION STRUCTURE OF A DIMER OF LAC REPRESSOR DNA-BINDING DOMAIN COMPLEXED TO ITS NATURAL OPERATOR O1
Descriptor: 5'-D(*AP*AP*AP*TP*TP*GP*TP*TP*AP*TP*CP*CP*GP*CP*TP*CP*AP*CP*AP*AP*TP*TP*C)-3', 5'-D(*GP*AP*AP*TP*TP*GP*TP*GP*AP*GP*CP*GP*GP*AP*TP*AP*AP*CP*AP*AP*TP*TP*T)-3', Lactose operon repressor
Authors:Kalodimos, C.G, Bonvin, A.M.J.J, Salinas, R.K, Wechselberger, R, Boelens, R, Kaptein, R.
Deposit date:2002-02-19
Release date:2002-06-26
Last modified:2021-10-27
Method:SOLUTION NMR
Cite:Plasticity in protein-DNA recognition: lac repressor interacts with its natural operator 01 through alternative conformations of its DNA-binding domain.
EMBO J., 21, 2002
1RGD
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BU of 1rgd by Molmil
STRUCTURE REFINEMENT OF THE GLUCOCORTICOID RECEPTOR-DNA BINDING DOMAIN FROM NMR DATA BY RELAXATION MATRIX CALCULATIONS
Descriptor: GLUCOCORTICOID RECEPTOR, ZINC ION
Authors:Van Tilborg, M.A.A, Bonvin, A.M.J.J, Hard, K, Davis, A, Maler, B, Boelens, R, Yamamoto, K.R, Kaptein, R.
Deposit date:1995-01-06
Release date:1995-02-14
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Structure refinement of the glucocorticoid receptor-DNA binding domain from NMR data by relaxation matrix calculations.
J.Mol.Biol., 247, 1995
4B50
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BU of 4b50 by Molmil
Crystal structure of the HIV-1 gp41 MPER-specific llama VHH 2H10
Descriptor: 2H10 LLAMA VHH
Authors:Lutje Hulsik, D, Sabin, C, Macheboeuf, P, Weissenhorn, W.
Deposit date:2012-08-02
Release date:2013-03-27
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:A Gp41 Mper-Specific Llama Vhh Requires a Hydrophobic Cdr3 for Neutralization But not for Antigen Recognition.
Plos Pathog., 9, 2013
5D28
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BU of 5d28 by Molmil
Complex of GM-CSF/IL-2 inhibition factor with Granulocyte-macrophage colony-stimulating factor
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GM-CSF/IL-2 inhibition factor, ...
Authors:Felix, J, Savvides, S.N.
Deposit date:2015-08-05
Release date:2016-11-16
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.845 Å)
Cite:Structural basis of GM-CSF and IL-2 sequestration by the viral decoy receptor GIF.
Nat Commun, 7, 2016
5D22
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BU of 5d22 by Molmil
Structure of ovine granulocyte-macrophage colony-stimulating factor
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Granulocyte-macrophage colony-stimulating factor
Authors:Felix, J, Savvides, S.N.
Deposit date:2015-08-05
Release date:2016-11-16
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.994 Å)
Cite:Structural basis of GM-CSF and IL-2 sequestration by the viral decoy receptor GIF.
Nat Commun, 7, 2016
4ZHO
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BU of 4zho by Molmil
The crystal structure of Arabidopsis ferredoxin 2 with 2Fe-2S cluster
Descriptor: CHLORIDE ION, FE2/S2 (INORGANIC) CLUSTER, Ferredoxin-2, ...
Authors:Grinter, R, Josts, I, Roszak, A.W, Cogdell, R.J, Walker, D.
Deposit date:2015-04-26
Release date:2016-08-31
Last modified:2017-08-30
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Structure of the bacterial plant-ferredoxin receptor FusA.
Nat Commun, 7, 2016
4ZHP
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BU of 4zhp by Molmil
The crystal structure of Potato ferredoxin I with 2Fe-2S cluster
Descriptor: FE2/S2 (INORGANIC) CLUSTER, Potato Ferredoxin I
Authors:Grinter, R, Josts, I, Roszak, A.W, Cogdell, R.J, Walker, D.
Deposit date:2015-04-26
Release date:2016-08-31
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:Structure of the bacterial plant-ferredoxin receptor FusA.
Nat Commun, 7, 2016
4ZGV
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BU of 4zgv by Molmil
The Crystal Structure of the Ferredoxin Receptor FusA from Pectobacterium atrosepticum SCRI1043
Descriptor: Ferredoxin receptor, LAURYL DIMETHYLAMINE-N-OXIDE, octyl beta-D-glucopyranoside
Authors:Grinter, R, Josts, I, Roszak, A.W, Cogdell, R.J, Walker, D.
Deposit date:2015-04-24
Release date:2016-08-31
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure of the bacterial plant-ferredoxin receptor FusA.
Nat Commun, 7, 2016
2BUN
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BU of 2bun by Molmil
Solution structure of the BLUF domain of AppA 5-125
Descriptor: APPA, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Grinstead, J.S, Hsu, S.-T, Laan, W, Bonvin, A.M.J.J, Hellingwerf, K.J, Boelens, R, Kaptein, R.
Deposit date:2005-06-15
Release date:2005-12-07
Last modified:2018-05-02
Method:SOLUTION NMR
Cite:The solution structure of the AppA BLUF domain: insight into the mechanism of light-induced signaling.
Chembiochem, 7, 2006

 

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