Author results

1MQX
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NMR SOLUTION STRUCTURE OF TYPE-B LANTIBIOTICS MERSACIDIN IN MEOH/H2O MIXTURE
Descriptor:LANTIBIOTIC MERSACIDIN
Authors:Hsu, S.-T., Breukink, E., Bierbaum, G., Sahl, H.-G., de Kruijff, B., Kaptein, R., van Nuland, N.A., Bonvin, A.M.
Deposit date:2002-09-17
Release date:2003-03-11
Last modified:2018-08-08
Method:SOLUTION NMR
Cite:NMR Study of Mersacidin and Lipid II Interaction in Dodecylphosphocholine Micelles. Conformational Changes are a Key to Antimicrobial Activity
J.Biol.Chem., 278, 2003
1MQY
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NMR SOLUTION STRUCTURE OF TYPE-B LANTIBIOTICS MERSACIDIN IN DPC MICELLES
Descriptor:LANTIBIOTIC MERSACIDIN
Authors:Hsu, S.-T., Breukink, E., Bierbaum, G., Sahl, H.-G., de Kruijff, B., Kaptein, R., van Nuland, N.A., Bonvin, A.M.
Deposit date:2002-09-17
Release date:2003-03-11
Last modified:2018-08-08
Method:SOLUTION NMR
Cite:NMR Study of Mersacidin and Lipid II Interaction in Dodecylphosphocholine Micelles. Conformational Changes are a Key to Antimicrobial Activity
J.Biol.Chem., 278, 2003
1MQZ
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NMR SOLUTION STRUCTURE OF TYPE-B LANTIBIOTICS MERSACIDIN BOUND TO LIPID II IN DPC MICELLES
Descriptor:LANTIBIOTIC MERSACIDIN
Authors:Hsu, S.-T., Breukink, E., Bierbaum, G., Sahl, H.-G., de Kruijff, B., Kaptein, R., van Nuland, N.A., Bonvin, A.M.
Deposit date:2002-09-17
Release date:2003-03-11
Last modified:2018-08-08
Method:SOLUTION NMR
Cite:NMR Study of Mersacidin and Lipid II Interaction in Dodecylphosphocholine Micelles. Conformational Changes are a Key to Antimicrobial Activity
J.Biol.Chem., 278, 2003
1Z0Q
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AQUEOUS SOLUTION STRUCTURE OF THE ALZHEIMER'S DISEASE ABETA PEPTIDE (1-42)
Descriptor:Alzheimer's disease amyloid
Authors:Tomaselli, S., Esposito, V., Vangone, P., van Nuland, N.A., Bonvin, A.M., Guerrini, R., Tancredi, T., Temussi, P.A., Picone, D.
Deposit date:2005-03-02
Release date:2006-05-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The alpha-to-beta Conformational Transition of Alzheimer's Abeta-(1-42) Peptide in Aqueous Media is Reversible: A Step by Step Conformational Analysis Suggests the Location of beta Conformation Seeding
Chembiochem, 7, 2006
2ERV
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CRYSTAL STRUCTURE OF THE OUTER MEMBRANE ENZYME PAGL
Descriptor:hypothetical protein Paer03002360, CALCIUM ION, PENTAETHYLENE GLYCOL MONODECYL ETHER
Authors:Rutten, L., Geurtsen, J., Lambert, W., Smolenaers, J.J., Bonvin, A.M., van der Ley, P., Egmond, M.R., Gros, P., Tommassen, J.
Deposit date:2005-10-25
Release date:2006-04-11
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure and catalytic mechanism of the LPS 3-O-deacylase PagL from Pseudomonas aeruginosa.
Proc.Natl.Acad.Sci.USA, 103, 2006
2FYJ
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NMR SOLUTION STRUCTURE OF CALCIUM-LOADED LRP DOUBLE MODULE
Descriptor:Low-density lipoprotein receptor-related protein 1
Authors:Jensen, G.A., Andersen, O.M., Bonvin, A.M., Bjerrum-Bohr, I., Etzerodt, M., O'shea, C., Poulsen, F.M., Kragelund, B.B.
Deposit date:2006-02-08
Release date:2006-10-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Binding Site Structure of One LRP-RAP Complex:Implications for a Common Ligand-Receptor Binding Motif.
J.Mol.Biol., 362, 2006
2FYL
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HADDOCK MODEL OF THE COMPLEX BETWEEN DOUBLE MODULE OF LRP, CR56, AND FIRST DOMAIN OF RECEPTOR ASSOCIATED PROTEIN, RAP-D1.
Descriptor:Alpha-2-macroglobulin receptor-associated protein, Low-density lipoprotein receptor-related protein 1, CALCIUM ION
Authors:Jensen, G.A., Andersen, O.M., Bonvin, A.M., Bjerrum-Bohr, I., Etzerodt, M., O'shea, C., Poulsen, F.M., Kragelund, B.B.
Deposit date:2006-02-08
Release date:2006-10-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Binding Site Structure of One LRP-RAP Complex:Implications for a Common Ligand-Receptor Binding Motif.
J.Mol.Biol., 362, 2006
1CCM
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DIRECT NOE REFINEMENT OF CRAMBIN FROM 2D NMR DATA USING A SLOW-COOLING ANNEALING PROTOCOL
Descriptor:CRAMBIN
Authors:Bonvin, A.M.J.J., Rullmann, J.A.C., Lamerichs, R.M.J.N., Boelens, R., Kaptein, R.
Deposit date:1993-04-14
Release date:1993-10-31
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:"Ensemble" iterative relaxation matrix approach: a new NMR refinement protocol applied to the solution structure of crambin.
Proteins, 15, 1993
1ARQ
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RELAXATION MATRIX REFINEMENT OF THE SOLUTION STRUCTURE OF THE ARC REPRESSOR
Descriptor:ARC REPRESSOR
Authors:Bonvin, A.M.J.J., Vis, H., Burgering, M.J.M., Breg, J.N., Boelens, R., Kaptein, R.
Deposit date:1993-08-24
Release date:1994-01-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Nuclear magnetic resonance solution structure of the Arc repressor using relaxation matrix calculations.
J.Mol.Biol., 236, 1994
1ARR
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RELAXATION MATRIX REFINEMENT OF THE SOLUTION STRUCTURE OF THE ARC REPRESSOR
Descriptor:ARC REPRESSOR
Authors:Bonvin, A.M.J.J., Vis, H., Burgering, M.J.M., Breg, J.N., Boelens, R., Kaptein, R.
Deposit date:1993-08-24
Release date:1994-01-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Nuclear magnetic resonance solution structure of the Arc repressor using relaxation matrix calculations.
J.Mol.Biol., 236, 1994
1WCO
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THE SOLUTION STRUCTURE OF THE NISIN-LIPID II COMPLEX
Descriptor:NAG-MUB-ALA-FGA-LYS-DAL-DAL PEPTIDE, NISIN Z, FARNESYL DIPHOSPHATE
Authors:Hsu, S.-T.D., Breukink, E., Tischenko, E., Lutters, M.A.G., de Kruijff, B., Kaptein, R., Bonvin, A.M.J.J., van Nuland, N.A.J.
Deposit date:2004-11-19
Release date:2005-03-07
Last modified:2018-01-17
Method:SOLUTION NMR
Cite:The nisin-lipid II complex reveals a pyrophosphate cage that provides a blueprint for novel antibiotics.
Nat. Struct. Mol. Biol., 11, 2004
1CJG
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NMR STRUCTURE OF LAC REPRESSOR HP62-DNA COMPLEX
Descriptor:DNA (5'-D(*GP*AP*AP*TP*TP*GP*TP*GP*AP*GP*CP*GP*CP*TP*CP*AP*CP*AP*AP*TP*TP*C)-3'), PROTEIN (LAC REPRESSOR)
Authors:Spronk, C.A.E.M., Bonvin, A.M.J.J., Radha, P.K., Melacini, G., Boelens, R., Kaptein, R.
Deposit date:1999-04-14
Release date:2000-01-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The solution structure of Lac repressor headpiece 62 complexed to a symmetrical lac operator.
Structure Fold.Des., 7, 1999
1LQC
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LAC REPRESSOR HEADPIECE (RESIDUES 1-56), NMR, 32 STRUCTURES
Descriptor:LAC REPRESSOR
Authors:Slijper, M., Bonvin, A.M.J.J., Boelens, R., Kaptein, R.
Deposit date:1996-08-13
Release date:1997-02-12
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Refined structure of lac repressor headpiece (1-56) determined by relaxation matrix calculations from 2D and 3D NOE data: change of tertiary structure upon binding to the lac operator.
J.Mol.Biol., 259, 1996
1HRA
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THE SOLUTION STRUCTURE OF THE HUMAN RETINOIC ACID RECEPTOR-BETA DNA-BINDING DOMAIN
Descriptor:RETINOIC ACID RECEPTOR, ZINC ION
Authors:Knegtel, R.M.A., Katahira, M., Schilthuis, J.G., Bonvin, A.M.J.J., Boelens, R., Eib, D., Van Der Saag, P.T., Kaptein, R.
Deposit date:1993-07-25
Release date:1994-01-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The solution structure of the human retinoic acid receptor-beta DNA-binding domain.
J.Biomol.NMR, 3, 1993
1L1M
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SOLUTION STRUCTURE OF A DIMER OF LAC REPRESSOR DNA-BINDING DOMAIN COMPLEXED TO ITS NATURAL OPERATOR O1
Descriptor:5'-D(*GP*AP*AP*TP*TP*GP*TP*GP*AP*GP*CP*GP*GP*AP*TP*AP*AP*CP*AP*AP*TP*TP*T)-3', 5'-D(*AP*AP*AP*TP*TP*GP*TP*TP*AP*TP*CP*CP*GP*CP*TP*CP*AP*CP*AP*AP*TP*TP*C)-3', Lactose operon repressor
Authors:Kalodimos, C.G., Bonvin, A.M.J.J., Salinas, R.K., Wechselberger, R., Boelens, R., Kaptein, R.
Deposit date:2002-02-19
Release date:2002-06-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Plasticity in protein-DNA recognition: lac repressor interacts with its natural operator 01 through alternative conformations of its DNA-binding domain.
EMBO J., 21, 2002
1OSL
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SOLUTION STRUCTURE OF A DIMERIC LACTOSE DNA-BINDING DOMAIN COMPLEXED TO A NONSPECIFIC DNA SEQUENCE
Descriptor:5'-D(*CP*GP*AP*TP*AP*AP*GP*AP*TP*AP*TP*CP*TP*TP*AP*TP*CP*G)-3', Lactose operon repressor
Authors:Kalodimos, C.G., Bonvin, A.M.J.J., Boelens, R., Kaptein, R.
Deposit date:2003-03-20
Release date:2004-05-04
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure and flexibility adaptation in nonspecific and specific protein-DNA complexes.
Science, 305, 2004
1RGD
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STRUCTURE REFINEMENT OF THE GLUCOCORTICOID RECEPTOR-DNA BINDING DOMAIN FROM NMR DATA BY RELAXATION MATRIX CALCULATIONS
Descriptor:GLUCOCORTICOID RECEPTOR, ZINC ION
Authors:Van Tilborg, M.A.A., Bonvin, A.M.J.J., Hard, K., Davis, A., Maler, B., Boelens, R., Yamamoto, K.R., Kaptein, R.
Deposit date:1995-01-06
Release date:1995-02-14
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure refinement of the glucocorticoid receptor-DNA binding domain from NMR data by relaxation matrix calculations.
J.Mol.Biol., 247, 1995
2BUN
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SOLUTION STRUCTURE OF THE BLUF DOMAIN OF APPA 5-125
Descriptor:APPA, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Grinstead, J.S., Hsu, S.-T., Laan, W., Bonvin, A.M.J.J., Hellingwerf, K.J., Boelens, R., Kaptein, R.
Deposit date:2005-06-15
Release date:2005-12-07
Last modified:2018-05-02
Method:SOLUTION NMR
Cite:The solution structure of the AppA BLUF domain: insight into the mechanism of light-induced signaling.
Chembiochem, 7, 2006
2K7F
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HADDOCK CALCULATED MODEL OF THE COMPLEX BETWEEN THE BRCT REGION OF RFC P140 AND DSDNA
Descriptor:Replication factor C subunit 1, 5'-D(P*DCP*DGP*DAP*DCP*DCP*DTP*DCP*DGP*DAP*DGP*DAP*DTP*DCP*DA)-3', 5'-D(P*DCP*DTP*DCP*DGP*DAP*DGP*DGP*DTP*DCP*DG)-3'
Authors:Kobayashi, M., Ab, E., Bonvin, A., Siegal, G.
Deposit date:2008-08-10
Release date:2009-09-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the DNA-bound BRCA1 C-terminal region from human replication factor C p140 and model of the protein-DNA complex.
J.Biol.Chem., 285, 2010
2N1T
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DYNAMIC BINDING MODE OF A SYNAPTOTAGMIN-1-SNARE COMPLEX IN SOLUTION
Descriptor:Vesicle-associated membrane protein 2, Syntaxin-1A, Synaptosomal-associated protein 25, ...
Authors:Brewer, K., Bacaj, T., Cavalli, A., Camilloni, C., Swarbrick, J., Liu, J., Zhou, A., Zhou, P., Barlow, N., Xu, J., Seven, A., Prinslow, E., Voleti, R., Haussinger, D., Bonvin, A., Tomchick, D., Vendruscolo, M., Graham, B., Sudhof, T., Rizo, J.
Deposit date:2015-04-21
Release date:2015-06-03
Last modified:2015-07-22
Method:SOLUTION NMR
Cite:Dynamic binding mode of a Synaptotagmin-1-SNARE complex in solution.
Nat.Struct.Mol.Biol., 22, 2015
1EFA
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CRYSTAL STRUCTURE OF THE LAC REPRESSOR DIMER BOUND TO OPERATOR AND THE ANTI-INDUCER ONPF
Descriptor:DNA (5'-D(*GP*AP*AP*T*TP*GP*TP*GP*AP*GP*CP*GP*CP*TP*CP*AP*CP*AP*AP*TP*T)-3'), LAC REPRESSOR, ORTHONITROPHENYL-BETA-D-FUCOPYRANOSIDE
Authors:Bell, C.E., Lewis, M.
Deposit date:2000-02-07
Release date:2000-03-06
Last modified:2011-11-16
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A closer view of the conformation of the Lac repressor bound to operator.
Nat.Struct.Biol., 7, 2000
2K35
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HYDRAMACIN-1: STRUCTURE AND ANTIBACTERIAL ACTIVITY OF A PEPTIDE FROM THE BASAL METAZOAN HYDRA
Descriptor:hydramacin-1
Authors:Jung, S., Dingley, A.J., Stanisak, M., Gelhaus, C., Bosch, T., Podschun, R., Leippe, M., Gr tzinger, J.
Deposit date:2008-04-22
Release date:2008-11-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Hydramacin-1, structure and antibacterial activity of a protein from the Basal metazoan hydra.
J.Biol.Chem., 284, 2009
2KEI
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REFINED SOLUTION STRUCTURE OF A DIMER OF LAC REPRESSOR DNA-BINDING DOMAIN COMPLEXED TO ITS NATURAL OPERATOR O1
Descriptor:Lactose operon repressor, DNA (5'-D(*GP*AP*AP*TP*TP*GP*TP*GP*AP*GP*CP*GP*GP*AP*TP*AP*AP*CP*AP*AP*TP*TP*T)-3'), DNA (5'-D(P*AP*AP*AP*TP*TP*GP*TP*TP*AP*TP*CP*CP*GP*CP*TP*CP*AP*CP*AP*AP*TP*TP*C)-3')
Authors:Romanuka, J., Folkers, G., Biris, N., Tishchenko, E., Wienk, H., Kaptein, R., Boelens, R.
Deposit date:2009-01-30
Release date:2009-05-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Specificity and affinity of Lac repressor for the auxiliary operators O2 and O3 are explained by the structures of their protein-DNA complexes.
J.Mol.Biol., 390, 2009
2KEJ
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SOLUTION STRUCTURE OF A DIMER OF LAC REPRESSOR DNA-BINDING DOMAIN COMPLEXED TO ITS NATURAL OPERATOR O2
Descriptor:Lactose operon repressor, DNA (5'-D(*GP*AP*AP*AP*TP*GP*TP*GP*AP*GP*CP*GP*AP*GP*TP*AP*AP*CP*AP*AP*CP*CP*G)-3'), DNA (5'-D(P*CP*GP*GP*TP*TP*GP*TP*TP*AP*CP*TP*CP*GP*CP*TP*CP*AP*CP*AP*TP*TP*TP*C)-3')
Authors:Romanuka, J., Folkers, G., Biris, N., Tishchenko, E., Wienk, H., Kaptein, R., Boelens, R.
Deposit date:2009-01-30
Release date:2009-05-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Specificity and affinity of Lac repressor for the auxiliary operators O2 and O3 are explained by the structures of their protein-DNA complexes.
J.Mol.Biol., 390, 2009
2KEK
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SOLUTION STRUCTURE OF A DIMER OF LAC REPRESSOR DNA-BINDING DOMAIN COMPLEXED TO ITS NATURAL OPERATOR O3
Descriptor:Lactose operon repressor, DNA (5'-D(*CP*GP*GP*CP*AP*GP*TP*GP*AP*GP*CP*GP*CP*AP*AP*CP*GP*CP*AP*AP*TP*TP*C)-3'), DNA (5'-D(P*GP*AP*AP*TP*TP*GP*CP*GP*TP*TP*GP*CP*GP*CP*TP*CP*AP*CP*TP*GP*CP*CP*G)-3')
Authors:Romanuka, J., Folkers, G., Biris, N., Tishchenko, E., Wienk, H., Kaptein, R., Boelens, R.
Deposit date:2009-01-30
Release date:2009-05-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Specificity and affinity of Lac repressor for the auxiliary operators O2 and O3 are explained by the structures of their protein-DNA complexes.
J.Mol.Biol., 390, 2009
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