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3D36
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BU of 3d36 by Molmil
How to Switch Off a Histidine Kinase: Crystal Structure of Geobacillus stearothermophilus KinB with the Inhibitor Sda
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Bick, M.J, Lamour, V, Rajashankar, K.R, Gordiyenko, Y, Robinson, C.V, Darst, S.A.
Deposit date:2008-05-09
Release date:2009-01-13
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:How to switch off a histidine kinase: crystal structure of Geobacillus stearothermophilus KinB with the inhibitor Sda
J.Mol.Biol., 386, 2009
5TZO
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BU of 5tzo by Molmil
Computationally Designed Fentanyl Binder - Fen49*-Complex
Descriptor: CHLORIDE ION, Endo-1,4-beta-xylanase A, N-phenyl-N-[1-(2-phenylethyl)piperidin-4-yl]propanamide, ...
Authors:Bick, M.J, Greisen, P.J, Morey, K.J, Antunes, M.S, La, D, Sankaran, B, Reymond, L, Johnsson, K, Medford, J.I, Baker, D.
Deposit date:2016-11-22
Release date:2017-10-04
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Computational design of environmental sensors for the potent opioid fentanyl.
Elife, 6, 2017
5TVV
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BU of 5tvv by Molmil
Computationally Designed Fentanyl Binder - Fen49* Apo
Descriptor: Endo-1,4-beta-xylanase A, POTASSIUM ION
Authors:Bick, M.J, Greisen, P.J, Morey, K.J, Antunes, A.S, La, D, Sankaran, B, Reymond, L, Johnsson, K, Medford, J.I, Baker, D.
Deposit date:2016-11-10
Release date:2017-10-04
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Computational design of environmental sensors for the potent opioid fentanyl.
Elife, 6, 2017
5TVY
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BU of 5tvy by Molmil
Computationally Designed Fentanyl Binder - Fen49
Descriptor: 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL, Endo-1,4-beta-xylanase A
Authors:Bick, M.J, Greisen, P.J, Morey, K.J, Antunes, M.S, La, D, Sankaran, B, Reymond, L, Johnsson, K, Medford, J.I, Baker, D.
Deposit date:2016-11-10
Release date:2017-10-04
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1 Å)
Cite:Computational design of environmental sensors for the potent opioid fentanyl.
Elife, 6, 2017
3NIB
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BU of 3nib by Molmil
Teg14 Apo
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, GLYCEROL, Teg14
Authors:Bick, M.J, Banik, J.J, Darst, S.A, Brady, S.F.
Deposit date:2010-06-15
Release date:2010-12-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The 2.7 A resolution structure of the glycopeptide sulfotransferase Teg14
Acta Crystallogr.,Sect.D, 66, 2010
3MGC
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BU of 3mgc by Molmil
Teg12 Apo
Descriptor: GLYCEROL, IMIDAZOLE, N-L-ALPHA-ASPARTYL L-PHENYLALANINE 1-METHYL ESTER, ...
Authors:Bick, M.J, Banik, J.J, Darst, S.A, Brady, S.F.
Deposit date:2010-04-05
Release date:2010-06-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Crystal structures of the glycopeptide sulfotransferase Teg12 in a complex with the teicoplanin aglycone.
Biochemistry, 49, 2010
3MG9
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BU of 3mg9 by Molmil
Teg 12 Binary Structure Complexed with the Teicoplanin Aglycone
Descriptor: FORMIC ACID, GLYCEROL, TEG12, ...
Authors:Bick, M.J, Banik, J.J, Darst, S.A, Brady, S.F.
Deposit date:2010-04-05
Release date:2010-06-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Crystal Structures of the Glycopeptide Sulfotransferase Teg12 in a Complex with the Teicoplanin Aglycone.
Biochemistry, 49, 2010
3MGB
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BU of 3mgb by Molmil
Teg 12 Ternary Structure Complexed with PAP and the Teicoplanin Aglycone
Descriptor: 3'-PHOSPHATE-ADENOSINE-5'-DIPHOSPHATE, ACETATE ION, CHLORIDE ION, ...
Authors:Bick, M.J, Banik, J.J, Darst, S.A, Brady, S.F.
Deposit date:2010-04-05
Release date:2010-06-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Crystal Structures of the Glycopeptide Sulfotransferase Teg12 in a Complex with the Teicoplanin Aglycone.
Biochemistry, 49, 2010
4OZ6
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BU of 4oz6 by Molmil
Structure of the Branched Intermediate in Protein Splicing
Descriptor: ALA-MET-ARG-TYR, MAGNESIUM ION, Mxe gyrA intein
Authors:Bick, M.J, Liu, Z, Frutos, S, Vila-Perello, M, Debelouchina, G.T, Darst, S.A, Muir, T.W.
Deposit date:2014-02-14
Release date:2014-05-14
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.786 Å)
Cite:Structure of the branched intermediate in protein splicing.
Proc.Natl.Acad.Sci.USA, 111, 2014
7JH5
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BU of 7jh5 by Molmil
Co-LOCKR: de novo designed protein switch
Descriptor: Co-LOCKR: de novo designed protein switch
Authors:Bick, M.J, Lajoie, M.J, Boyken, S.E, Sankaran, B, Baker, D.
Deposit date:2020-07-20
Release date:2020-09-02
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.103 Å)
Cite:Designed protein logic to target cells with precise combinations of surface antigens.
Science, 369, 2020
6DLM
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BU of 6dlm by Molmil
DHD127
Descriptor: DHD127_A, DHD127_B
Authors:Bick, M.J, Chen, Z, Baker, D.
Deposit date:2018-06-01
Release date:2018-12-19
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.753 Å)
Cite:Programmable design of orthogonal protein heterodimers.
Nature, 565, 2019
6DMA
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BU of 6dma by Molmil
DHD15_closed
Descriptor: DHD15_closed_A, DHD15_closed_B
Authors:Bick, M.J, Chen, Z, Baker, D.
Deposit date:2018-06-04
Release date:2018-12-19
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.363 Å)
Cite:Programmable design of orthogonal protein heterodimers.
Nature, 565, 2019
6DKM
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BU of 6dkm by Molmil
DHD131
Descriptor: DHD131_A, DHD131_B
Authors:Bick, M.J, Chen, Z, Baker, D.
Deposit date:2018-05-29
Release date:2018-12-19
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Programmable design of orthogonal protein heterodimers.
Nature, 565, 2019
6DM9
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BU of 6dm9 by Molmil
DHD15_extended
Descriptor: DHD15_extended_A, DHD15_extended_B, SULFATE ION
Authors:Bick, M.J, Chen, Z, Baker, D.
Deposit date:2018-06-04
Release date:2018-12-19
Last modified:2019-11-20
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Programmable design of orthogonal protein heterodimers.
Nature, 565, 2019
6DLC
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BU of 6dlc by Molmil
Designed protein DHD1:234_A, Designed protein DHD1:234_B
Descriptor: Designed protein DHD1:234_A, Designed protein DHD1:234_B
Authors:Bick, M.J, Chen, Z, Baker, D.
Deposit date:2018-05-31
Release date:2018-12-26
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.261 Å)
Cite:Programmable design of orthogonal protein heterodimers.
Nature, 565, 2019
6EGC
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BU of 6egc by Molmil
Single-chain version of 2L4HC2_23 (PDB 5J0K)
Descriptor: SC_2L4HC2_23
Authors:Bick, M.J, Chen, Z, DiMaio, F.
Deposit date:2018-08-19
Release date:2019-05-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Self-Assembling 2D Arrays with de Novo Protein Building Blocks.
J.Am.Chem.Soc., 141, 2019
6V67
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BU of 6v67 by Molmil
Apo Structure of the De Novo PD-1 Binding Miniprotein GR918.2
Descriptor: PD-1 Binding Miniprotein GR918.2
Authors:Bick, M.J, Bryan, C.M, Baker, D, Dimaio, F, Kang, A.
Deposit date:2019-12-04
Release date:2020-12-09
Last modified:2021-12-29
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:Computational design of a synthetic PD-1 agonist.
Proc.Natl.Acad.Sci.USA, 118, 2021
6VEH
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BU of 6veh by Molmil
Computationally designed C3-symmetric homotrimer from HEAT repeat protein
Descriptor: HEAT repeat domain-containing protein
Authors:Bick, M.J, Ueda, G, Baker, D.
Deposit date:2020-01-02
Release date:2020-08-05
Last modified:2020-08-19
Method:X-RAY DIFFRACTION (2.303 Å)
Cite:Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens.
Elife, 9, 2020
6W2V
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BU of 6w2v by Molmil
Junction 23, DHR14-DHR18
Descriptor: Junction 23 DHR14-DHR18
Authors:Bick, M.J, Brunette, T.J, Baker, D.
Deposit date:2020-03-08
Release date:2020-04-15
Last modified:2020-04-29
Method:X-RAY DIFFRACTION (2.399 Å)
Cite:Modular repeat protein sculpting using rigid helical junctions.
Proc.Natl.Acad.Sci.USA, 117, 2020
6W2W
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BU of 6w2w by Molmil
Junction 24, DHR14-DHR18
Descriptor: Junction 24 DHR14-DHR18
Authors:Bick, M.J, Brunette, T.J, Baker, D.
Deposit date:2020-03-08
Release date:2020-04-15
Last modified:2020-04-29
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Modular repeat protein sculpting using rigid helical junctions.
Proc.Natl.Acad.Sci.USA, 117, 2020
6W2Q
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BU of 6w2q by Molmil
Junction 34, DHR53-DHR4
Descriptor: CALCIUM ION, Junction 34
Authors:Bick, M.J, Brunette, T.J, Baker, D.
Deposit date:2020-03-08
Release date:2020-04-15
Last modified:2020-04-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Modular repeat protein sculpting using rigid helical junctions.
Proc.Natl.Acad.Sci.USA, 117, 2020
6W3D
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BU of 6w3d by Molmil
Rd1NTF2_05 with long sheet
Descriptor: Rd1NTF2_05
Authors:Bick, M.J, Basanta, B, Sankaran, B, Baker, D.
Deposit date:2020-03-09
Release date:2020-04-15
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:An enumerative algorithm for de novo design of proteins with diverse pocket structures.
Proc.Natl.Acad.Sci.USA, 117, 2020
6W3G
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BU of 6w3g by Molmil
Rd1NTF2_04 with long sheet
Descriptor: Rd1NTF2_04
Authors:Bick, M.J, Basanta, B, Sankaran, B, Baker, D.
Deposit date:2020-03-09
Release date:2020-04-15
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:An enumerative algorithm for de novo design of proteins with diverse pocket structures.
Proc.Natl.Acad.Sci.USA, 117, 2020
6W2R
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BU of 6w2r by Molmil
Junction 19, DHR54-DHR79
Descriptor: Junction 19 DHR54-DHR79
Authors:Bick, M.J, Brunette, T.J, Baker, D.
Deposit date:2020-03-08
Release date:2020-04-15
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.344 Å)
Cite:Modular repeat protein sculpting using rigid helical junctions.
Proc.Natl.Acad.Sci.USA, 117, 2020
6W3F
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BU of 6w3f by Molmil
Rd1NTF2_05_I64F_A80G_T94P_D101K_L106W
Descriptor: Rd1NTF2_05_I64F_A80G_T94P_D101K_L106W
Authors:Bick, M.J, Basanta, B, Sankaran, B, Baker, D.
Deposit date:2020-03-09
Release date:2020-04-15
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:An enumerative algorithm for de novo design of proteins with diverse pocket structures.
Proc.Natl.Acad.Sci.USA, 117, 2020

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PDB entries from 2024-03-27

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