Author results

3D36
  • Download 3d36
  • View 3d36
Molmil generated image of 3d36
HOW TO SWITCH OFF A HISTIDINE KINASE: CRYSTAL STRUCTURE OF GEOBACILLUS STEAROTHERMOPHILUS KINB WITH THE INHIBITOR SDA
Descriptor:Sporulation kinase B, Sporulation kinase inhibitor Sda, MAGNESIUM ION, ...
Authors:Bick, M.J., Lamour, V., Rajashankar, K.R., Gordiyenko, Y., Robinson, C.V., Darst, S.A.
Deposit date:2008-05-09
Release date:2009-01-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:How to switch off a histidine kinase: crystal structure of Geobacillus stearothermophilus KinB with the inhibitor Sda
J.Mol.Biol., 386, 2009
3MG9
  • Download 3mg9
  • View 3mg9
Molmil generated image of 3mg9
TEG 12 BINARY STRUCTURE COMPLEXED WITH THE TEICOPLANIN AGLYCONE
Descriptor:TEG12, TEICOPLANIN AGLYCONE, FORMIC ACID, ...
Authors:Bick, M.J., Banik, J.J., Darst, S.A., Brady, S.F.
Deposit date:2010-04-05
Release date:2010-06-09
Last modified:2012-12-12
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Crystal Structures of the Glycopeptide Sulfotransferase Teg12 in a Complex with the Teicoplanin Aglycone.
Biochemistry, 49, 2010
3MGB
  • Download 3mgb
  • View 3mgb
Molmil generated image of 3mgb
TEG 12 TERNARY STRUCTURE COMPLEXED WITH PAP AND THE TEICOPLANIN AGLYCONE
Descriptor:TEG12, TEICOPLANIN AGLYCONE, 3'-PHOSPHATE-ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Bick, M.J., Banik, J.J., Darst, S.A., Brady, S.F.
Deposit date:2010-04-05
Release date:2010-06-09
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Crystal Structures of the Glycopeptide Sulfotransferase Teg12 in a Complex with the Teicoplanin Aglycone.
Biochemistry, 49, 2010
3MGC
  • Download 3mgc
  • View 3mgc
Molmil generated image of 3mgc
TEG12 APO
Descriptor:Teg12, GLYCEROL, IMIDAZOLE, ...
Authors:Bick, M.J., Banik, J.J., Darst, S.A., Brady, S.F.
Deposit date:2010-04-05
Release date:2010-06-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Crystal structures of the glycopeptide sulfotransferase Teg12 in a complex with the teicoplanin aglycone.
Biochemistry, 49, 2010
3NIB
  • Download 3nib
  • View 3nib
Molmil generated image of 3nib
TEG14 APO
Descriptor:Teg14, 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, GLYCEROL
Authors:Bick, M.J., Banik, J.J., Darst, S.A., Brady, S.F.
Deposit date:2010-06-15
Release date:2010-12-08
Last modified:2012-03-28
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The 2.7 A resolution structure of the glycopeptide sulfotransferase Teg14
Acta Crystallogr.,Sect.D, 66, 2010
5TVV
  • Download 5tvv
  • View 5tvv
Molmil generated image of 5tvv
COMPUTATIONALLY DESIGNED FENTANYL BINDER - FEN49* APO
Descriptor:Endo-1,4-beta-xylanase A, POTASSIUM ION
Authors:Bick, M.J., Greisen, P.J., Morey, K.J., Antunes, A.S., La, D., Sankaran, B., Reymond, L., Johnsson, K., Medford, J.I., Baker, D.
Deposit date:2016-11-10
Release date:2017-10-04
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Computational design of environmental sensors for the potent opioid fentanyl.
Elife, 6, 2017
5TVY
  • Download 5tvy
  • View 5tvy
Molmil generated image of 5tvy
COMPUTATIONALLY DESIGNED FENTANYL BINDER - FEN49
Descriptor:Endo-1,4-beta-xylanase A, 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL
Authors:Bick, M.J., Greisen, P.J., Morey, K.J., Antunes, M.S., La, D., Sankaran, B., Reymond, L., Johnsson, K., Medford, J.I., Baker, D.
Deposit date:2016-11-10
Release date:2017-10-04
Method:X-RAY DIFFRACTION (1 Å)
Cite:Computational design of environmental sensors for the potent opioid fentanyl.
Elife, 6, 2017
5TZO
  • Download 5tzo
  • View 5tzo
Molmil generated image of 5tzo
COMPUTATIONALLY DESIGNED FENTANYL BINDER - FEN49*-COMPLEX
Descriptor:Endo-1,4-beta-xylanase A, N-phenyl-N-[1-(2-phenylethyl)piperidin-4-yl]propanamide, POTASSIUM ION, ...
Authors:Bick, M.J., Greisen, P.J., Morey, K.J., Antunes, M.S., La, D., Sankaran, B., Reymond, L., Johnsson, K., Medford, J.I., Baker, D.
Deposit date:2016-11-22
Release date:2017-10-04
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Computational design of environmental sensors for the potent opioid fentanyl.
Elife, 6, 2017
4OZ6
  • Download 4oz6
  • View 4oz6
Molmil generated image of 4oz6
STRUCTURE OF THE BRANCHED INTERMEDIATE IN PROTEIN SPLICING
Descriptor:Mxe gyrA intein, ALA-MET-ARG-TYR, MAGNESIUM ION
Authors:Bick, M.J., Liu, Z., Frutos, S., Vila-Perello, M., Debelouchina, G.T., Darst, S.A., Muir, T.W.
Deposit date:2014-02-14
Release date:2014-05-14
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (2.786 Å)
Cite:Structure of the branched intermediate in protein splicing.
Proc.Natl.Acad.Sci.USA, 111, 2014
6DKM
  • Download 6dkm
  • View 6dkm
Molmil generated image of 6dkm
DHD131
Descriptor:DHD131_A, DHD131_B
Authors:Bick, M.J., Chen, Z., Baker, D.
Deposit date:2018-05-29
Release date:2018-12-19
Last modified:2019-01-16
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Programmable design of orthogonal protein heterodimers.
Nature, 565, 2019
6DLC
  • Download 6dlc
  • View 6dlc
Molmil generated image of 6dlc
DESIGNED PROTEIN DHD1:234_A, DESIGNED PROTEIN DHD1:234_B
Descriptor:Designed protein DHD1:234_A, Designed protein DHD1:234_B
Authors:Bick, M.J., Chen, Z., Baker, D.
Deposit date:2018-05-31
Release date:2018-12-26
Last modified:2019-01-16
Method:X-RAY DIFFRACTION (3.261 Å)
Cite:Programmable design of orthogonal protein heterodimers.
Nature, 565, 2019
6DLM
  • Download 6dlm
  • View 6dlm
Molmil generated image of 6dlm
DHD127
Descriptor:DHD127_A, DHD127_B
Authors:Bick, M.J., Chen, Z., Baker, D.
Deposit date:2018-06-01
Release date:2018-12-19
Last modified:2019-01-16
Method:X-RAY DIFFRACTION (1.753 Å)
Cite:Programmable design of orthogonal protein heterodimers.
Nature, 565, 2019
6DM9
  • Download 6dm9
  • View 6dm9
Molmil generated image of 6dm9
DHD15_EXTENDED
Descriptor:DHD15_extended_A, DHD15_extended_B, SULFATE ION
Authors:Bick, M.J., Chen, Z., Baker, D.
Deposit date:2018-06-04
Release date:2018-12-19
Last modified:2019-01-16
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Programmable design of orthogonal protein heterodimers.
Nature, 565, 2019
6DMA
  • Download 6dma
  • View 6dma
Molmil generated image of 6dma
DHD15_CLOSED
Descriptor:DHD15_closed_A, DHD15_closed_B
Authors:Bick, M.J., Chen, Z., Baker, D.
Deposit date:2018-06-04
Release date:2018-12-19
Last modified:2019-01-16
Method:X-RAY DIFFRACTION (3.363 Å)
Cite:Programmable design of orthogonal protein heterodimers.
Nature, 565, 2019
3NRX
  • Download 3nrx
  • View 3nrx
Molmil generated image of 3nrx
INSIGHTS INTO ANTI-PARALLEL MICROTUBULE CROSSLINKING BY PRC1, A CONSERVED NON-MOTOR MICROTUBULE BINDING PROTEIN
Descriptor:Protein regulator of cytokinesis 1
Authors:Kapoor, T.M., Subramanian, R., Wilson-Kubalek, E.M., Arthur, C.P., Bick, M.J., Campbell, E.A., Darst, S.A., Milligan, R.A.
Deposit date:2010-06-30
Release date:2010-08-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Insights into Antiparallel Microtubule Crosslinking by PRC1, a Conserved Nonmotor Microtubule Binding Protein.
Cell(Cambridge,Mass.), 142, 2010
3NRY
  • Download 3nry
  • View 3nry
Molmil generated image of 3nry
INSIGHTS INTO ANTI-PARALLEL MICROTUBULE CROSSLINKING BY PRC1, A CONSERVED MICROTUBULE BINDING PROTEIN
Descriptor:Protein regulator of cytokinesis 1
Authors:Kapoor, T.M., Subramanian, R., Wilson-Kubalek, E.M., Arthur, C.P., Bick, M.J., Campbell, E.A., Darst, S.A., Milligan, R.A.
Deposit date:2010-07-01
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Insights into Antiparallel Microtubule Crosslinking by PRC1, a Conserved Nonmotor Microtubule Binding Protein.
Cell(Cambridge,Mass.), 142, 2010
4IJB
  • Download 4ijb
  • View 4ijb
Molmil generated image of 4ijb
CRYSTAL STRUCTURE OF ENGINEERED PROTEIN, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET OR288
Descriptor:Engineered Protein OR288
Authors:Vorobiev, S., Su, M., Bick, M.J., Seetharaman, J., Khare, S., Maglaqui, M., Xiao, R., Lee, D., Day, A., Everett, J.K., Acton, T.B., Baker, D., Montelione, G.T., Hunt, J., Tong, L., Northeast Structural Genomics Consortium (NESG)
Deposit date:2012-12-21
Release date:2013-01-16
Last modified:2013-02-27
Method:X-RAY DIFFRACTION (1.739 Å)
Cite:Crystal Structure of Engineered Protein OR288.
To be Published
6D0T
  • Download 6d0t
  • View 6d0t
Molmil generated image of 6d0t
DE NOVO DESIGN OF A FLUORESCENCE-ACTIVATING BETA BARREL - BB1
Descriptor:BB1
Authors:Dou, J., Vorobieva, A.A., Sheffler, W., Doyle, L.A., Park, H., Bick, M.J., Mao, B., Foight, G.W., Lee, M., Carter, L., Sankaran, B., Ovchinnikov, S., Marcos, E., Huang, P., Vaughan, J.C., Stoddard, B.L., Baker, D.
Deposit date:2018-04-10
Release date:2018-09-19
Last modified:2018-10-17
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:De novo design of a fluorescence-activating beta-barrel.
Nature, 561, 2018
6CZG
  • Download 6czg
  • View 6czg
Molmil generated image of 6czg
STRUCTURE OF A REDESIGNED BETA BARREL, B11L5F_LGL
Descriptor:b11L5F_LGL
Authors:Doyle, L.A., Stoddard, B.L.
Deposit date:2018-04-09
Release date:2018-09-19
Last modified:2018-10-10
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:De novo design of a fluorescence-activating beta-barrel.
Nature, 561, 2018
6CZH
  • Download 6czh
  • View 6czh
Molmil generated image of 6czh
STRUCTURE OF A REDESIGNED BETA BARREL, MFAP0, BOUND TO DFHBI
Descriptor:mFAP0, (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one
Authors:Doyle, L.A., Stoddard, B.L.
Deposit date:2018-04-09
Release date:2018-09-19
Last modified:2018-10-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:De novo design of a fluorescence-activating beta-barrel.
Nature, 561, 2018
6CZI
  • Download 6czi
  • View 6czi
Molmil generated image of 6czi
STRUCTURE OF A REDESIGNED BETA BARREL, MFAP1, BOUND TO DFHBI
Descriptor:mFAP1, (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one
Authors:Doyle, L.A., Stoddard, B.L.
Deposit date:2018-04-09
Release date:2018-09-19
Last modified:2018-10-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:De novo design of a fluorescence-activating beta-barrel.
Nature, 561, 2018
6CZJ
  • Download 6czj
  • View 6czj
Molmil generated image of 6czj
STRUCTURE OF A REDESIGNED BETA BARREL, B10
Descriptor:b10, SULFATE ION
Authors:Doyle, L.A., Stoddard, B.L.
Deposit date:2018-04-09
Release date:2018-09-19
Last modified:2018-10-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:De novo design of a fluorescence-activating beta-barrel.
Nature, 561, 2018
6DMP
  • Download 6dmp
  • View 6dmp
Molmil generated image of 6dmp
DE NOVO DESIGN OF A PROTEIN HETERODIMER WITH SPECIFICITY MEDIATED BY HYDROGEN BOND NETWORKS
Descriptor:Designed orthogonal protein DHD13_XAAA_A, Designed orthogonal protein DHD13_XAAA_B
Authors:Chen, Z., Flores-Solis, D., Sgourakis, N.G., Baker, D.
Deposit date:2018-06-05
Release date:2018-12-19
Last modified:2019-01-16
Method:SOLUTION NMR
Cite:Programmable design of orthogonal protein heterodimers.
Nature, 565, 2019
PDBj@FacebookPDBj@TwitterwwPDBwwPDB Foundation

Copyright © 2013-2019 Protein Data Bank Japan