Author results

1WJX
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CRYSTAL STURUCTURE OF TT0801 FROM THERMUS THERMOPHILUS
Descriptor:SsrA-binding protein, POTASSIUM ION
Authors:Bessho, Y., Shibata, R., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-29
Release date:2004-11-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for functional mimicry of long-variable-arm tRNA by transfer-messenger RNA.
Proc.Natl.Acad.Sci.Usa, 104, 2007
2CZJ
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CRYSTAL STRUCTURE OF THE TRNA DOMAIN OF TMRNA FROM THERMUS THERMOPHILUS HB8
Descriptor:SsrA-binding protein, tmRNA (63-MER)
Authors:Bessho, Y., Shibata, R., Sekine, S., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-13
Release date:2006-10-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Structural basis for functional mimicry of long-variable-arm tRNA by transfer-messenger RNA.
Proc.Natl.Acad.Sci.Usa, 104, 2007
2PCR
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CRYSTAL STRUCTURE OF MYO-INOSITOL-1(OR 4)-MONOPHOSPHATASE (AQ_1983) FROM AQUIFEX AEOLICUS VF5
Descriptor:Inositol-1-monophosphatase
Authors:Jeyakanthan, J., Gayathri, D., Velmurugan, D., Agari, Y., Bessho, Y., Ellis, M.J., Antonyuk, S.V., Strange, R.W., Hasnain, S.S., Ebihara, A., Kuramitsu, S., Shinkai, A., Shiro, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-30
Release date:2007-10-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of Myo-inositol-1(or 4)-monophosphatase (aq_1983) from Aquifex Aeolicus VF5
To be Published
2E21
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CRYSTAL STRUCTURE OF TILS IN A COMPLEX WITH AMPPNP FROM AQUIFEX AEOLICUS.
Descriptor:tRNA(Ile)-lysidine synthase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Kuratani, M., Yoshikawa, Y., Sekine, S., Ishii, T., Shibata, R., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-11-06
Release date:2007-11-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of the initial binding of tRNA(Ile) lysidine synthetase TilS with ATP and L-lysine
To be Published
2YXL
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CRYSTAL STRUCTURE OF PH0851
Descriptor:450aa long hypothetical fmu protein, SINEFUNGIN
Authors:Hikida, Y., Kuratani, M., Bessho, Y., Ishii, R., Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-26
Release date:2008-04-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structure of an archaeal homologue of the bacterial Fmu/RsmB/RrmB rRNA cytosine 5-methyltransferase
Acta Crystallogr.,Sect.D, 66, 2010
2YXX
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CRYSTAL STRUCTURE ANALYSIS OF DIAMINOPIMELATE DECARBOXYLATE (LYSA)
Descriptor:Diaminopimelate decarboxylase, PYRIDOXAL-5'-PHOSPHATE
Authors:Nakamura, Y., Bessho, Y., Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-27
Release date:2007-10-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure analysis of Diaminopimelate decarboxylate (lysA)
To be Published
2YXY
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CRYSTARL STRUCTURE OF HYPOTHETICAL CONSERVED PROTEIN, GK0453
Descriptor:Hypothetical conserved protein, GK0453
Authors:Nakamu, Y., Bessho, Y., Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-27
Release date:2007-10-30
Last modified:2013-04-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of the hypothetical DUF1811-family protein GK0453 from Geobacillus kaustophilus HTA426
Acta Crystallogr.,Sect.F, 69, 2013
2YYT
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CRYSTAL STRUCTURE OF UNCHARACTERIZED CONSERVED PROTEIN FROM GEOBACILLUS KAUSTOPHILUS
Descriptor:Orotidine 5'-phosphate decarboxylase
Authors:Kanagawa, M., Baba, S., Nakamura, Y., Bessho, Y., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-02
Release date:2007-11-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of uncharacterized conserved protein from Geobacillus kaustophilus
To be Published
2YYU
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CRYSTAL STRUCTURE OF UNCHARACTERIZED CONSERVED PROTEIN FROM GEOBACILLUS KAUSTOPHILUS
Descriptor:Orotidine 5'-phosphate decarboxylase, CYTIDINE-5'-MONOPHOSPHATE
Authors:Kanagawa, M., Baba, S., Nakamura, Y., Bessho, Y., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-02
Release date:2007-11-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of uncharacterized conserved protein from Geobacillus kaustophilus
To be Published
2YYV
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CRYSTAL STRUCTURE OF UNCHARACTERIZED CONSERVED PROTEIN FROM THERMOTOGA MARITIMA
Descriptor:Probable 2-phosphosulfolactate phosphatase
Authors:Nakagawa, N., Nakamura, Y., Bessho, Y., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-02
Release date:2007-11-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of uncharacterized conserved protein from Thermotoga maritima
To be Published
2YZO
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CRYSTAL STRUCTURE OF UNCHARACTERIZED CONSERVED PROTEIN FROM THERMOTOGA MARITIMA
Descriptor:Probable 2-phosphosulfolactate phosphatase, D-MALATE
Authors:Nakagawa, N., Nakamura, Y., Bessho, Y., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-06
Release date:2007-11-06
Last modified:2012-02-15
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of uncharacterized conserved protein from Thermotoga maritima
To be Published
2YX1
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CRYSTAL STRUCTURE OF M.JANNASCHII TRNA M1G37 METHYLTRANSFERASE
Descriptor:Hypothetical protein MJ0883, ZINC ION, SINEFUNGIN
Authors:Goto-Ito, S., Ito, T., Ishii, R., Bessho, Y., Yokoyama, S.
Deposit date:2007-04-23
Release date:2008-04-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of archaeal tRNA(m(1)G37)methyltransferase aTrm5.
Proteins, 72, 2008
2YXG
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CRYSTAL STRUCTURE OF DIHYRODIPICOLINATE SYNTHASE (DAPA)
Descriptor:Dihydrodipicolinate synthase
Authors:Padmanabhan, B., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-26
Release date:2007-10-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of dihydrodipicolinate synthase from Methanocaldococcus jannaschii.
Acta Crystallogr.,Sect.F, 65, 2009
3KB6
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CRYSTAL STRUCTURE OF D-LACTATE DEHYDROGENASE FROM AQUIFEX AEOLICUS COMPLEXED WITH NAD AND LACTIC ACID
Descriptor:D-lactate dehydrogenase, PROPANOIC ACID, LACTIC ACID, ...
Authors:Antonyuk, S.V., Strange, R.W., Ellis, M.J., Bessho, Y., Kuramitsu, S., Yokoyama, S., Hasnain, S.S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-10-20
Release date:2009-11-10
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Structure of D-lactate dehydrogenase from Aquifex aeolicus complexed with NAD(+) and lactic acid (or pyruvate).
Acta Crystallogr.,Sect.F, 65, 2009
1VS3
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CRYSTAL STRUCTURE OF THE TRNA PSEUDOURIDINE SYNTHASE TRUA FROM THERMUS THERMOPHILUS HB8
Descriptor:tRNA pseudouridine synthase A
Authors:Dong, X., Bessho, Y., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-06-28
Release date:2006-12-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal Structure of tRNA Pseudouridine Synthase TruA from Thermus thermophilus HB8
Rna Biol., 3, 2006
1WFX
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CRYSTAL STRUCTURE OF APE0204 FROM AEROPYRUM PERNIX
Descriptor:Probable RNA 2'-phosphotransferase, ZINC ION, CHLORIDE ION
Authors:Kato-Murayama, M., Bessho, Y., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-27
Release date:2004-11-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of the RNA 2'-Phosphotransferase from Aeropyrum pernix K1
J.Mol.Biol., 348, 2005
1WWR
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CRYSTAL STRUCTURE OF TRNA ADENOSINE DEAMINASE TADA FROM AQUIFEX AEOLICUS
Descriptor:tRNA adenosine deaminase TadA, ZINC ION
Authors:Kuratani, M., Ishii, R., Bessho, Y., Fukunaga, R., Sengoku, T., Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-01-12
Release date:2005-02-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of tRNA Adenosine Deaminase (TadA) from Aquifex aeolicus
J.Biol.Chem., 280, 2005
2CV8
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CRYSTAL STRUCTURE OF TRNA-INTRON ENDONUCLEASE FROM SULFOLOBUS TOKODAII
Descriptor:tRNA-splicing endonuclease, CHLORIDE ION
Authors:Kato-Murayama, M., Bessho, Y., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-01
Release date:2005-12-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of tRNA-intron endonuclease from Sulfolobus tokodaii
To be Published
2CXA
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CRYSTAL STRUCTURE OF LEUCYL/PHENYLALANYL-TRNA PROTEIN TRANSFERASE FROM ESCHERICHIA COLI
Descriptor:Leucyl/phenylalanyl-tRNA-protein transferase
Authors:Kato-Murayama, M., Bessho, Y., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-28
Release date:2005-12-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The crystal structure of leucyl/phenylalanyl-tRNA-protein transferase from Escherichia coli
Protein Sci., 16, 2007
2CXC
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CRYSTAL STRUCTURE OF ARCHAEAL TRANSCRIPTION TERMINATION FACTOR NUSA
Descriptor:NusA
Authors:Shibata, R., Bessho, Y., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-28
Release date:2005-12-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure and RNA-binding analysis of the archaeal transcription factor NusA
Biochem.Biophys.Res.Commun., 355, 2007
2CY1
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CRYSTAL STRUCTURE OF APE1850
Descriptor:NusA protein homolog
Authors:Shibata, R., Bessho, Y., Umehara, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-04
Release date:2006-01-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystallization of the archaeal transcription termination factor NusA: a significant decrease in twinning under microgravity conditions
Acta Crystallogr.,Sect.F, 63, 2007
2CYA
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CRYSTAL STRUCTURE OF TYROSYL-TRNA SYNTHETASE FROM AEROPYRUM PERNIX
Descriptor:Tyrosyl-tRNA synthetase, SULFATE ION
Authors:Kuratani, M., Sakai, H., Takahashi, M., Yanagisawa, T., Kobayashi, T., Murayama, K., Chen, L., Liu, Z.J., Wang, B.C., Kuroishi, C., Kuramitsu, S., Terada, T., Bessho, Y., Shirouzu, M., Sekine, S.I., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-06
Release date:2005-11-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structures of Tyrosyl-tRNA Synthetases from Archaea
J.Mol.Biol., 355, 2005
2DBI
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CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN JW0805 FROM ESCHERICHIA COLI
Descriptor:Hypothetical protein ybiU
Authors:Ihsanawati, Murayama, K., Bessho, Y., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-12-15
Release date:2006-06-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal Structure of a Hypothetical Protein JW0805 from Escherichia coli
To be published
2DBN
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CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN JW0805 AT HIGH PH FROM ESCHERICHIA COLI
Descriptor:Hypothetical protein ybiU, SULFATE ION
Authors:Ihsanawati, Murayama, K., Bessho, Y., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-12-15
Release date:2006-06-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of a Hypothetical Protein JW0805 at High pH from Escherichia coli
To be published
2DBO
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CRYSTAL STRUCTURE OF D-TYR-TRNA(TYR) DEACYLASE FROM AQUIFEX AEOLICUS
Descriptor:D-tyrosyl-tRNA(Tyr) deacylase
Authors:Ishii, T., Shibata, R., Bessho, Y., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-12-15
Release date:2006-06-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Crystal structure of D-Tyr-tRNA(Tyr) deacylase from Aquifex aeolicus
To be Published