Author results

1BGW
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TOPOISOMERASE RESIDUES 410-1202,
Descriptor:TOPOISOMERASE
Authors:Berger, J.M., Gamblin, S.J., Harrison, S.C., Wang, J.C.
Deposit date:1996-02-20
Release date:1996-07-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure and mechanism of DNA topoisomerase II.
Nature, 379, 1996
6DUQ
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STRUCTURE OF A RHO-NUSG KOW DOMAIN COMPLEX
Descriptor:Transcription termination factor Rho, Transcription termination/antitermination protein NusG, rU12, ...
Authors:Berger, J.M., Lawson, M.R.
Deposit date:2018-06-21
Release date:2018-09-05
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Mechanism for the Regulated Control of Bacterial Transcription Termination by a Universal Adaptor Protein.
Mol. Cell, 71, 2018
1BJT
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TOPOISOMERASE II RESIDUES 409-1201
Descriptor:TOPOISOMERASE II
Authors:Fass, D., Bogden, C.E., Berger, J.M.
Deposit date:1998-06-29
Release date:1999-05-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Quaternary changes in topoisomerase II may direct orthogonal movement of two DNA strands.
Nat.Struct.Biol., 6, 1999
1AOL
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FRIEND MURINE LEUKEMIA VIRUS RECEPTOR-BINDING DOMAIN
Descriptor:GP70, N-ACETYL-D-GLUCOSAMINE, ZINC ION
Authors:Fass, D., Davey, R.A., Hamson, C.A., Kim, P.S., Cunningham, J.M., Berger, J.M.
Deposit date:1997-07-08
Release date:1997-10-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a murine leukemia virus receptor-binding glycoprotein at 2.0 angstrom resolution.
Science, 277, 1997
2G2U
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CRYSTAL STRUCTURE OF THE SHV-1 BETA-LACTAMASE/BETA-LACTAMASE INHIBITOR PROTEIN (BLIP) COMPLEX
Descriptor:Beta-lactamase SHV-1, Beta-lactamase inhibitory protein
Authors:Reynolds, K.A., Thomson, J.M., Corbett, K.D., Bethel, C.R., Berger, J.M., Kirsch, J.F., Bonomo, R.A., Handel, T.M.
Deposit date:2006-02-16
Release date:2006-07-04
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural and Computational Characterization of the SHV-1 beta-Lactamase-beta-Lactamase Inhibitor Protein Interface.
J.Biol.Chem., 281, 2006
2G2W
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CRYSTAL STRUCTURE OF THE SHV D104K BETA-LACTAMASE/BETA-LACTAMASE INHIBITOR PROTEIN (BLIP) COMPLEX
Descriptor:Beta-lactamase SHV-1, Beta-lactamase inhibitory protein
Authors:Reynolds, K.A., Thomson, J.M., Corbett, K.D., Bethel, C.R., Berger, J.M., Kirsch, J.F., Bonomo, R.A., Handel, T.M.
Deposit date:2006-02-16
Release date:2006-07-04
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and Computational Characterization of the SHV-1 beta-Lactamase-beta-Lactamase Inhibitor Protein Interface.
J.Biol.Chem., 281, 2006
3C4O
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CRYSTAL STRUCTURE OF THE SHV-1 BETA-LACTAMASE/BETA-LACTAMASE INHIBITOR PROTEIN (BLIP) E73M/S130K/S146M COMPLEX
Descriptor:Beta-lactamase SHV-1, Beta-lactamase inhibitory protein, SULFATE ION
Authors:Reynolds, K.A., Hanes, M.S., Thomson, J.M., Antczak, A.J., Berger, J.M., Bonomo, R.A., Kirsch, J.F., Handel, T.M.
Deposit date:2008-01-30
Release date:2008-05-27
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Computational redesign of the SHV-1 beta-lactamase/beta-lactamase inhibitor protein interface.
J.Mol.Biol., 382, 2008
3C4P
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CRYSTAL STRUCTURE OF THE SHV-1 BETA-LACTAMASE/BETA-LACTAMASE INHIBITOR PROTEIN (BLIP) E73M COMPLEX
Descriptor:Beta-lactamase SHV-1, Beta-lactamase inhibitory protein, SULFATE ION
Authors:Reynolds, K.A., Hanes, M.S., Thomson, J.M., Antczak, A.J., Berger, J.M., Bonomo, R.A., Kirsch, J.F., Handel, T.M.
Deposit date:2008-01-30
Release date:2008-05-27
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Computational redesign of the SHV-1 beta-lactamase/beta-lactamase inhibitor protein interface.
J.Mol.Biol., 382, 2008
3FK3
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STRUCTURE OF THE YEATS DOMAIN, YAF9
Descriptor:Protein AF-9 homolog
Authors:Wang, A.Y., Schulze, J.M., Skordalakes, E., Berger, J.M., Rine, J., Kobor, M.S.
Deposit date:2008-12-15
Release date:2009-10-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Asf1-like structure of the conserved Yaf9 YEATS domain and role in H2A.Z deposition and acetylation
Proc.Natl.Acad.Sci.USA, 106, 2009
1A8V
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STRUCTURE OF THE RNA-BINDING DOMAIN OF THE RHO TRANSCRIPTION TERMINATOR
Descriptor:TRANSCRIPTION TERMINATION FACTOR RHO, COPPER (II) ION
Authors:Fass, D., Bogden, C., Berger, J.M.
Deposit date:1998-03-28
Release date:1999-05-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The structural basis for terminator recognition by the Rho transcription termination factor.
Mol.Cell, 3, 1999
1AIK
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HIV GP41 CORE STRUCTURE
Descriptor:HIV-1 GP41 GLYCOPROTEIN
Authors:Chan, D.C., Fass, D., Berger, J.M., Kim, P.S.
Deposit date:1997-04-20
Release date:1997-06-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Core structure of gp41 from the HIV envelope glycoprotein.
Cell(Cambridge,Mass.), 89, 1997
1AJJ
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LDL RECEPTOR LIGAND-BINDING MODULE 5, CALCIUM-COORDINATING
Descriptor:LOW-DENSITY LIPOPROTEIN RECEPTOR, SULFATE ION, CALCIUM ION
Authors:Fass, D., Blacklow, S.C., Kim, P.S., Berger, J.M.
Deposit date:1997-05-04
Release date:1997-07-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Molecular basis of familial hypercholesterolaemia from structure of LDL receptor module.
Nature, 388, 1997
1B79
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N-TERMINAL DOMAIN OF DNA REPLICATION PROTEIN DNAB
Descriptor:DnaB Helicase
Authors:Fass, D., Bogden, C.E., Berger, J.M.
Deposit date:1999-01-28
Release date:1999-06-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the N-terminal domain of the DnaB hexameric helicase.
Structure Fold.Des., 7, 1999
1D3Y
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STRUCTURE OF THE DNA TOPOISOMERASE VI A SUBUNIT
Descriptor:DNA TOPOISOMERASE VI A SUBUNIT, SODIUM ION, MAGNESIUM ION
Authors:Nichols, M.D., DeAngelis, K.A., Keck, J.L., Berger, J.M.
Deposit date:1999-10-01
Release date:1999-11-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and function of an archaeal topoisomerase VI subunit with homology to the meiotic recombination factor Spo11.
EMBO J., 18, 1999
1DD9
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STRUCTURE OF THE DNAG CATALYTIC CORE
Descriptor:DNA PRIMASE, STRONTIUM ION
Authors:Keck, J.L., Roche, D.D., Lynch, A.S., Berger, J.M.
Deposit date:1999-11-09
Release date:2000-04-07
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of the RNA polymerase domain of E. coli primase.
Science, 287, 2000
1DDE
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STRUCTURE OF THE DNAG CATALYTIC CORE
Descriptor:DNA PRIMASE, YTTRIUM ION
Authors:Keck, J.L., Roche, D.D., Lynch, A.S., Berger, J.M.
Deposit date:1999-11-09
Release date:2000-04-07
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of the RNA polymerase domain of E. coli primase.
Science, 287, 2000
1DSX
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KV1.2 T1 DOMAIN, RESIDUES 33-119, T46V MUTANT
Descriptor:PROTEIN (KV1.2 VOLTAGE-GATED POTASSIUM CHANNEL)
Authors:Minor Jr., D.L., Lin, Y.-F., Mobley, B.C., Avelar, A., Jan, Y.N., Jan, L.Y., Berger, J.M.
Deposit date:2000-01-10
Release date:2000-09-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The polar T1 interface is linked to conformational changes that open the voltage-gated potassium channel.
Cell(Cambridge,Mass.), 102, 2000
1F21
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DIVALENT METAL COFACTOR BINDING IN THE KINETIC FOLDING TRAJECTORY OF E. COLI RIBONUCLEASE HI
Descriptor:RIBONUCLEASE HI
Authors:Goedken, E.R., Keck, J.L., Berger, J.M., Marqusee, S.
Deposit date:2000-05-22
Release date:2000-12-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Divalent metal cofactor binding in the kinetic folding trajectory of Escherichia coli ribonuclease HI.
Protein Sci., 9, 2000
1FNN
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CRYSTAL STRUCTURE OF CDC6P FROM PYROBACULUM AEROPHILUM
Descriptor:CELL DIVISION CONTROL PROTEIN 6, MAGNESIUM ION, ADENOSINE-5'-DIPHOSPHATE
Authors:Liu, J., Smith, C.L., DeRyckere, D., DeAngelis, K., Martin, G.S., Berger, J.M.
Deposit date:2000-08-22
Release date:2000-10-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and function of Cdc6/Cdc18: implications for origin recognition and checkpoint control.
Mol.Cell, 6, 2000
1JL2
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CRYSTAL STRUCTURE OF TCEO RNASE H-A CHIMERA COMBINING THE FOLDING CORE FROM T. THERMOPHILUS RNASE H AND THE REMAINING REGION OF E. COLI RNASE H
Descriptor:Chimera of Ribonuclease HI, Ribonuclease H
Authors:Robic, S., Berger, J.M., Marqusee, S.
Deposit date:2001-07-13
Release date:2002-01-18
Last modified:2017-06-28
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Contributions of folding cores to the thermostabilities of two ribonucleases H.
Protein Sci., 11, 2002
1L8Q
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CRYSTAL STRUCTURE OF DNA REPLICATION INITIATION FACTOR
Descriptor:Chromosomal replication initiator protein dnaA, MAGNESIUM ION, ADENOSINE-5'-DIPHOSPHATE
Authors:Erzberger, J.P., Pirruccello, M.M., Berger, J.M.
Deposit date:2002-03-21
Release date:2002-09-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The structure of bacterial DnaA: implications for general mechanisms underlying DNA replication initiation
Embo J., 21, 2002
1MU5
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STRUCTURE OF TOPOISOMERASE SUBUNIT
Descriptor:Type II DNA topoisomerase VI Subunit B, CALCIUM ION
Authors:Corbett, K.D., Berger, J.M.
Deposit date:2002-09-23
Release date:2003-01-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the topoisomerase VI-B subunit: implications for type II topoisomerase mechanism and evolution
Embo J., 22, 2003
1MX0
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STRUCTURE OF TOPOISOMERASE SUBUNIT
Descriptor:Type II DNA topoisomerase VI subunit B, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Corbett, K.D., Berger, J.M.
Deposit date:2002-10-01
Release date:2003-01-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the topoisomerase VI-B subunit: implications for type II topoisomerase mechanism and evolution
Embo J., 22, 2003
1PV4
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X-RAY CRYSTAL STRUCTURE OF THE RHO TRANSCRIPTION TERMINATION FACTOR IN COMPLEX WITH SINGLE STRANDED DNA
Descriptor:5'-D(P*CP*C)-3', Transcription termination factor rho
Authors:Skordalakes, E., Berger, J.M.
Deposit date:2003-06-26
Release date:2003-07-22
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of the Rho transcription terminator: mechanism of mRNA recognition and helicase loading
Cell(Cambridge,Mass.), 114, 2003
1PVG
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CRYSTAL STRUCTURE OF THE ATPASE REGION OF SACCHAROMYCES CEREVISIAE TOPOISOMERASE II
Descriptor:DNA topoisomerase II, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Classen, S., Olland, S., Berger, J.M.
Deposit date:2003-06-27
Release date:2003-08-26
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of the topoisomerase II ATPase region and its mechanism of inhibition by the chemotherapeutic agent ICRF-187
Proc.Natl.Acad.Sci.USA, 100, 2003