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1IMS
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BU of 1ims by Molmil
MOLECULAR STRUCTURE OF THE HALOGENATED ANTI-CANCER DRUG IODODOXORUBICIN COMPLEXED WITH D(TGTACA) AND D(CGATCG)
Descriptor: 4'-DEOXY-4'-IODODOXORUBICIN, DNA (5'-D(*CP*GP*AP*TP*CP*G)-3')
Authors:Berger, I, Su, L, Spitzner, J.R, Kang, C, Burke, T.G, Rich, A.
Deposit date:1995-10-23
Release date:1996-04-04
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Molecular structure of the halogenated anti-cancer drug iododoxorubicin complexed with d(TGTACA) and d(CGATCG).
Nucleic Acids Res., 23, 1995
1IMR
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BU of 1imr by Molmil
MOLECULAR STRUCTURE OF THE HALOGENATED ANTI-CANCER DRUG IODODOXORUBICIN COMPLEXED WITH D(TGTACA) AND D(CGATCG)
Descriptor: 4'-DEOXY-4'-IODODOXORUBICIN, DNA (5'-D(*TP*GP*TP*AP*CP*A)-3')
Authors:Berger, I, Su, L, Spitzner, J.R, Kang, C, Burke, T.G, Rich, A.
Deposit date:1995-10-23
Release date:1996-04-04
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Molecular structure of the halogenated anti-cancer drug iododoxorubicin complexed with d(TGTACA) and d(CGATCG).
Nucleic Acids Res., 23, 1995
241D
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BU of 241d by Molmil
EXTENSION OF THE FOUR-STRANDED INTERCALATED CYTOSINE MOTIF BY ADENINE.ADENINE BASE PAIRING IN THE CRYSTAL STRUCTURE OF D(CCCAAT)
Descriptor: DNA (5'-D(*CP*CP*CP*AP*AP*T)-3')
Authors:Berger, I, Kang, C, Fredian, A, Ratliff, R, Moyzis, R, Rich, A.
Deposit date:1995-12-07
Release date:1996-04-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Extension of the four-stranded intercalated cytosine motif by adenine.adenine base pairing in the crystal structure of d(CCCAAT).
Nat.Struct.Biol., 2, 1995
388D
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BU of 388d by Molmil
CRYSTAL STRUCTURE OF B-DNA WITH INCORPORATED 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINES: IMPLICATIONS OF CONFORMATIONAL PREORGANIZATION FOR DUPLEX STABILITY
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*(TAF)P*(TAF)P*CP*GP*CP*G)-3'), MAGNESIUM ION
Authors:Berger, I, Tereshko, V, Ikeda, H, Marquez, V.E, Egli, M.
Deposit date:1998-04-20
Release date:1998-05-05
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structures of B-DNA with incorporated 2'-deoxy-2'-fluoro-arabino-furanosyl thymines: implications of conformational preorganization for duplex stability.
Nucleic Acids Res., 26, 1998
389D
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BU of 389d by Molmil
CRYSTAL STRUCTURE OF B-DNA WITH INCORPORATED 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINES: IMPLICATIONS OF CONFORMATIONAL PREORGANIZATION FOR DUPLEX STABILITY
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-3'), MAGNESIUM ION
Authors:Berger, I, Tereshko, V, Ikeda, H, Marquez, V.E, Egli, M.
Deposit date:1998-04-20
Release date:1998-05-05
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structures of B-DNA with incorporated 2'-deoxy-2'-fluoro-arabino-furanosyl thymines: implications of conformational preorganization for duplex stability.
Nucleic Acids Res., 26, 1998
3U3K
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BU of 3u3k by Molmil
Crystal structure of hSULT1A1 bound to PAP and 2-Naphtol
Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, Sulfotransferase 1A1, naphthalen-2-ol
Authors:Guttman, C, Berger, I, Aharoni, A, Zarivach, R.
Deposit date:2011-10-06
Release date:2011-11-16
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:The molecular basis for the broad substrate specificity of human sulfotransferase 1A1.
Plos One, 6, 2011
3U3R
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BU of 3u3r by Molmil
Crystal structure of D249G mutated Human SULT1A1 bound to PAP and P-NITROPHENOL
Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, P-NITROPHENOL, Sulfotransferase 1A1
Authors:Guttman, C, Berger, I, Aharoni, A, Zarivach, R.
Deposit date:2011-10-06
Release date:2011-11-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:The molecular basis for the broad substrate specificity of human sulfotransferase 1A1.
Plos One, 6, 2011
3U3J
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BU of 3u3j by Molmil
Crystal structure of hSULT1A1 bound to PAP
Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, Sulfotransferase 1A1
Authors:Guttman, C, Berger, I, Aharoni, A, Zarivach, R.
Deposit date:2011-10-06
Release date:2011-11-16
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The molecular basis for the broad substrate specificity of human sulfotransferase 1A1.
Plos One, 6, 2011
3U3M
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BU of 3u3m by Molmil
Crystal structure of Human SULT1A1 bound to PAP and 3-Cyano-7-hydroxycoumarin
Descriptor: 7-hydroxy-2-oxo-2H-chromene-3-carbonitrile, ADENOSINE-3'-5'-DIPHOSPHATE, Sulfotransferase 1A1
Authors:Guttman, C, Berger, I, Aharoni, A, Zarivach, R.
Deposit date:2011-10-06
Release date:2011-11-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The molecular basis for the broad substrate specificity of human sulfotransferase 1A1.
Plos One, 6, 2011
3U3O
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BU of 3u3o by Molmil
Crystal structure of Human SULT1A1 bound to PAP and two 3-Cyano-7-hydroxycoumarin
Descriptor: 7-hydroxy-2-oxo-2H-chromene-3-carbonitrile, ADENOSINE-3'-5'-DIPHOSPHATE, Sulfotransferase 1A1
Authors:Guttman, C, Berger, I, Aharoni, A, Zarivach, R.
Deposit date:2011-10-06
Release date:2011-11-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:The molecular basis for the broad substrate specificity of human sulfotransferase 1A1.
Plos One, 6, 2011
8QB3
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BU of 8qb3 by Molmil
ADDobody zinc containing condition
Descriptor: ADDobody, ZINC ION
Authors:Buzas, D, Toelzer, C, Berger, I, Schaffitzel, C.
Deposit date:2023-08-24
Release date:2023-12-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Engineering the ADDobody protein scaffold for generation of high-avidity ADDomer super-binders.
Structure, 32, 2024
7ZH2
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BU of 7zh2 by Molmil
SARS CoV Spike protein, Closed C1 conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, LINOLEIC ACID, ...
Authors:Toelzer, C, Gupta, K, Yadav, S.K.N, Buzas, D, Borucu, U, Schaffitzel, C, Berger, I.
Deposit date:2022-04-05
Release date:2023-02-15
Method:ELECTRON MICROSCOPY (2.71 Å)
Cite:The free fatty acid-binding pocket is a conserved hallmark in pathogenic beta-coronavirus spike proteins from SARS-CoV to Omicron.
Sci Adv, 8, 2022
7ZH5
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BU of 7zh5 by Molmil
SARS CoV Spike protein, Open conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein,Fibritin
Authors:Toelzer, C, Gupta, K, Yadav, S.K.N, Buzas, D, Borucu, U, Schaffitzel, C, Berger, I.
Deposit date:2022-04-05
Release date:2023-02-15
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:The free fatty acid-binding pocket is a conserved hallmark in pathogenic beta-coronavirus spike proteins from SARS-CoV to Omicron.
Sci Adv, 8, 2022
7ZH1
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BU of 7zh1 by Molmil
SARS CoV Spike protein, Closed C3 conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, LINOLEIC ACID, ...
Authors:Toelzer, C, Gupta, K, Yadav, S.K.N, Buzas, D, Borucu, U, Schaffitzel, C, Berger, I.
Deposit date:2022-04-05
Release date:2023-02-15
Method:ELECTRON MICROSCOPY (2.48 Å)
Cite:The free fatty acid-binding pocket is a conserved hallmark in pathogenic beta-coronavirus spike proteins from SARS-CoV to Omicron.
Sci Adv, 8, 2022
191D
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BU of 191d by Molmil
CRYSTAL STRUCTURE OF INTERCALATED FOUR-STRANDED D(C3T)
Descriptor: DNA (5'-D(*CP*CP*CP*T)-3'), SODIUM ION
Authors:Kang, C, Berger, I, Lockshin, C, Ratliff, R, Moyzis, R, Rich, A.
Deposit date:1994-09-29
Release date:1994-11-30
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of intercalated four-stranded d(C3T) at 1.4 angstroms resolution.
Proc.Natl.Acad.Sci.USA, 91, 1994
8F2U
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BU of 8f2u by Molmil
Human CCC complex
Descriptor: COMM domain-containing protein 1, COMM domain-containing protein 10, COMM domain-containing protein 2, ...
Authors:Healy, M.D, McNally, K.E, Butkovic, R, Chilton, M, Kato, K, Sacharz, J, McConville, C, Moody, E.R.R, Shaw, S, Planelles-Herrero, V.J, Kadapalakere, S.Y, Ross, J, Borucu, U, Palmer, C.S, Chen, K, Croll, T.I, Hall, R.J, Caruana, N.J, Ghai, R, Nguyen, T.H.D, Heesom, K.J, Saitoh, S, Berger, I, Berger-Schaffitzel, C, Williams, T.A, Stroud, D.A, Derivery, E, Collins, B.M, Cullen, P.J.
Deposit date:2022-11-08
Release date:2023-05-24
Method:ELECTRON MICROSCOPY (3.53 Å)
Cite:Structure of the endosomal Commander complex linked to Ritscher-Schinzel syndrome.
Cell, 186, 2023
8F2R
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BU of 8f2r by Molmil
Human CCC complex
Descriptor: COMM domain-containing protein 1, COMM domain-containing protein 10, COMM domain-containing protein 2, ...
Authors:Healy, M.D, McNally, K.E, Butkovic, R, Chilton, M, Kato, K, Sacharz, J, McConville, C, Moody, E.R.R, Shaw, S, Planelles-Herrero, V.J, Kadapalakere, S.Y, Ross, J, Borucu, U, Palmer, C.S, Chen, K, Croll, T.I, Hall, R.J, Caruana, N.J, Ghai, R, Nguyen, T.H.D, Heesom, K.J, Saitoh, S, Berger, I, Berger-Schaffitzel, C, Williams, T.A, Stroud, D.A, Derivery, E, Collins, B.M, Cullen, P.J.
Deposit date:2022-11-08
Release date:2023-05-24
Method:ELECTRON MICROSCOPY (3.12 Å)
Cite:Structure of the endosomal Commander complex linked to Ritscher-Schinzel syndrome.
Cell, 186, 2023
8COI
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BU of 8coi by Molmil
Human adenovirus-derived synthetic ADDobody binder
Descriptor: ADDobody
Authors:Buzas, D, Toelzer, C, Gupta, K, Berger-Schaffitzel, C, Berger, I.
Deposit date:2023-02-28
Release date:2023-12-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.17 Å)
Cite:Engineering the ADDobody protein scaffold for generation of high-avidity ADDomer super-binders.
Structure, 32, 2024
8C9N
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BU of 8c9n by Molmil
MiniCoV-ADDomer, a SARS-CoV-2 epitope presenting viral like particle
Descriptor: Penton protein
Authors:Bufton, J.C, Capin, J, Boruku, U, Garzoni, F, Schaffitzel, C, Berger, I.
Deposit date:2023-01-23
Release date:2023-12-06
Last modified:2023-12-20
Method:ELECTRON MICROSCOPY (2.36 Å)
Cite:In vitro generated antibodies guide thermostable ADDomer nanoparticle design for nasal vaccination and passive immunization against SARS-CoV-2.
Antib Ther, 6, 2023
2IY3
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BU of 2iy3 by Molmil
Structure of the E. Coli Signal Regognition Particle
Descriptor: 4.5S RNA, SIGNAL SEQUENCE, Signal recognition particle protein,Signal recognition particle 54 kDa protein
Authors:Schaffitzel, C, Oswald, M, Berger, I, Ishikawa, T, Abrahams, J.P, Koerten, H.K, Koning, R.I, Ban, N.
Deposit date:2006-07-12
Release date:2006-11-02
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (16 Å)
Cite:Structure of the E. Coli Signal Recognition Particle Bound to a Translating Ribosome
Nature, 444, 2006
5AKA
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BU of 5aka by Molmil
EM structure of ribosome-SRP-FtsY complex in closed state
Descriptor: 23S ribosomal RNA, 4.5S ribosomal RNA, 50S RIBOSOMAL PROTEIN L11, ...
Authors:von Loeffelholz, O, Jiang, Q, Ariosa, A, Karuppasamy, M, Huard, K, Berger, I, Shan, S, Schaffitzel, C.
Deposit date:2015-03-03
Release date:2015-03-25
Last modified:2017-12-20
Method:ELECTRON MICROSCOPY (5.7 Å)
Cite:Ribosome-Srp-Ftsy Cotranslational Targeting Complex in the Closed State.
Proc.Natl.Acad.Sci.USA, 112, 2015
3ZN8
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BU of 3zn8 by Molmil
Structural Basis of Signal Sequence Surveillance and Selection by the SRP-SR Complex
Descriptor: 4.5 S RNA, DIPEPTIDYL AMINOPEPTIDASE B, MAGNESIUM ION, ...
Authors:von Loeffelholz, O, Knoops, K, Ariosa, A, Zhang, X, Karuppasamy, M, Huard, K, Schoehn, G, Berger, I, Shan, S.O, Schaffitzel, C.
Deposit date:2013-02-13
Release date:2013-03-06
Last modified:2018-10-03
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Structural Basis of Signal Sequence Surveillance and Selection by the Srp-Sr Complex
Nat.Struct.Mol.Biol., 20, 2013
200D
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BU of 200d by Molmil
STABLE LOOP IN THE CRYSTAL STRUCTURE OF THE INTERCALATED FOUR-STRANDED CYTOSINE-RICH METAZOAN TELOMERE
Descriptor: DNA (5'-D(*TP*AP*AP*CP*CP*C)-3')
Authors:Kang, C, Berger, I, Lockshin, C, Ratliff, R, Moyzis, R, Rich, A.
Deposit date:1995-02-16
Release date:1995-07-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Stable loop in the crystal structure of the intercalated four-stranded cytosine-rich metazoan telomere.
Proc.Natl.Acad.Sci.USA, 92, 1995
2A0P
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BU of 2a0p by Molmil
Crystal structure of RNA oligomer containing 4'-thioribose
Descriptor: 5'-R(*CP*CP*(S4C)P*CP*GP*GP*GP*G)-3'
Authors:Haeberli, P, Berger, I, Pallan, P.S, Egli, M.
Deposit date:2005-06-16
Release date:2005-08-16
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Syntheses of 4'-thioribonucleosides and thermodynamic stability and crystal structure of RNA oligomers with incorporated 4'-thiocytosine
Nucleic Acids Res., 33, 2005
6F3T
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BU of 6f3t by Molmil
Crystal structure of the human TAF5-TAF6-TAF9 complex
Descriptor: CHLORIDE ION, Transcription initiation factor TFIID subunit 5, Transcription initiation factor TFIID subunit 6, ...
Authors:Haffke, M, Berger, I.
Deposit date:2017-11-28
Release date:2018-12-05
Last modified:2018-12-19
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Chaperonin CCT checkpoint function in basal transcription factor TFIID assembly.
Nat. Struct. Mol. Biol., 25, 2018

 

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