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3PQK
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BU of 3pqk by Molmil
Crystal Structure of the transcriptional repressor BigR from Xylella fastidiosa
Descriptor: Biofilm growth-associated repressor
Authors:Benedetti, C.E, Guimaraes, B.G.
Deposit date:2010-11-26
Release date:2011-06-01
Last modified:2011-08-03
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Plant Pathogenic Bacteria Utilize Biofilm Growth-associated Repressor (BigR), a Novel Winged-helix Redox Switch, to Control Hydrogen Sulfide Detoxification under Hypoxia.
J.Biol.Chem., 286, 2011
8FWN
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BU of 8fwn by Molmil
Crystal structure of SARS-CoV-2 papain-like protease C111S mutant
Descriptor: ACETATE ION, CHLORIDE ION, GLYCEROL, ...
Authors:Bezerra, E.H.S, Soprano, A.S, Tonoli, C.C.C, Prado, P.F.V, da Silva, J.C, Franchini, K.G, Trivella, D.B.B, Benedetti, C.E.
Deposit date:2023-01-23
Release date:2023-05-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of SARS-CoV-2 papain-like protease C111S mutant
To Be Published
8FWO
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BU of 8fwo by Molmil
Crystal structure of SARS-CoV-2 papain-like protease
Descriptor: CHLORIDE ION, GLYCEROL, PHOSPHATE ION, ...
Authors:Bezerra, E.H.S, Soprano, A.S, Tonoli, C.C.C, Prado, P.F.V, da Silva, J.C, Franchini, K.G, Trivella, D.B.B, Benedetti, C.E.
Deposit date:2023-01-23
Release date:2024-01-31
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of SARS-CoV-2 papain-like protease
To Be Published
4JJM
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BU of 4jjm by Molmil
Structure of a cyclophilin from Citrus sinensis (CsCyp) in complex with cyclosporin A
Descriptor: Peptidyl-prolyl cis-trans isomerase, cyclosporin A
Authors:Campos, B.M, Ambrosio, A.L.B, Souza, T.A.C.B, Barbosa, J.A.R.G, Benedetti, C.E.
Deposit date:2013-03-08
Release date:2013-06-12
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:A redox 2-cys mechanism regulates the catalytic activity of divergent cyclophilins.
Plant Physiol., 162, 2013
7UXX
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BU of 7uxx by Molmil
Crystal structure of SARS-CoV-2 nucleocapsid protein C-terminal domain
Descriptor: ACETATE ION, GLYCEROL, Nucleoprotein
Authors:Bezerra, E.H.S, Tonoli, C.C.C, Soprano, A.S, Franchini, K.G, Trivella, D.B.B, Benedetti, C.E.
Deposit date:2022-05-06
Release date:2022-06-22
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Discovery and structural characterization of chicoric acid as a SARS-CoV-2 nucleocapsid protein ligand and RNA binding disruptor.
Sci Rep, 12, 2022
7UXZ
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BU of 7uxz by Molmil
Crystal structure of SARS-CoV-2 nucleocapsid protein C-terminal domain complexed with Chicoric acid
Descriptor: (2R,3R)-2,3-bis{[(2E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy}butanedioic acid, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Bezerra, E.H.S, Tonoli, C.C.C, Soprano, A.S, Franchini, K.G, Trivella, D.B.B, Benedetti, C.E.
Deposit date:2022-05-06
Release date:2022-06-22
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.733 Å)
Cite:Discovery and structural characterization of chicoric acid as a SARS-CoV-2 nucleocapsid protein ligand and RNA binding disruptor.
Sci Rep, 12, 2022
3PQJ
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BU of 3pqj by Molmil
Crystal Structure of the transcriptional repressor BigR from Xylella fastidiosa
Descriptor: Biofilm growth-associated repressor
Authors:Guimaraes, B.G, Benedetti, C.E.
Deposit date:2010-11-26
Release date:2011-06-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Plant Pathogenic Bacteria Utilize Biofilm Growth-associated Repressor (BigR), a Novel Winged-helix Redox Switch, to Control Hydrogen Sulfide Detoxification under Hypoxia.
J.Biol.Chem., 286, 2011
2PXG
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BU of 2pxg by Molmil
NMR Solution Structure of OmlA
Descriptor: Outer membrane protein
Authors:Vanini, M.M.T, Pertinhez, T.A, Sforca, M.L, Spisni, A, Benedetti, C.E.
Deposit date:2007-05-14
Release date:2008-01-29
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The solution structure of the outer membrane lipoprotein OmlA from Xanthomonas axonopodis pv. citri reveals a protein fold implicated in protein-protein interaction.
Proteins, 71, 2008
5U50
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BU of 5u50 by Molmil
Crystal structure of citrus MAF1 in space group C 2 2 21
Descriptor: Repressor of RNA polymerase III transcription
Authors:Soprano, A.S, Giuseppe, P.O, Nascimento, A.F.Z, Benedetti, C.E, Murakami, M.T.
Deposit date:2016-12-06
Release date:2017-07-19
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.902 Å)
Cite:Crystal structure of citrus MAF1 in space group C 2 2 21
To Be Published
5U4Z
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BU of 5u4z by Molmil
Crystal structure of citrus MAF1 in space group P 31 2 1
Descriptor: Repressor of RNA polymerase III transcription, SULFATE ION
Authors:Soprano, A.S, Giuseppe, P.O, Nascimento, A.F.Z, Benedetti, C.E, Murakami, M.T.
Deposit date:2016-12-06
Release date:2017-07-19
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal structure of citrus MAF1 in space group P 31 2 1
To Be Published
2M70
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BU of 2m70 by Molmil
Structural determination of the Citrus sinensis Poly(A)-Binding Protein CsPABP1
Descriptor: Poly(A)-binding protein 1
Authors:Sforca, M.L, Domingues, M.N, Zeri, A.C.M, Benedetti, C.E.
Deposit date:2013-04-16
Release date:2014-04-16
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural determination of the Citrus sinensis Poly(A)-Binding Protein CsPABP1
To be Published
2NUH
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BU of 2nuh by Molmil
Crystal structure of CutA from the phytopathgen bacterium Xylella fastidiosa
Descriptor: IMIDAZOLE, Periplasmic divalent cation tolerance protein
Authors:Medrano, F.J, Benedetti, C.E.
Deposit date:2006-11-09
Release date:2007-01-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Crystal structure of CutA from the phytopathgen bacterium Xylella fastidiosa
To be published
6WQ6
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BU of 6wq6 by Molmil
Xanthomonas citri Methionyl-tRNA synthetase in complex with methionine
Descriptor: METHIONINE, Methionine--tRNA ligase, ZINC ION
Authors:Mercaldi, G.F, Benedetti, C.E.
Deposit date:2020-04-28
Release date:2021-04-21
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Molecular basis for diaryldiamine selectivity and competition with tRNA in a type 2 methionyl-tRNA synthetase from a Gram-negative bacterium.
J.Biol.Chem., 296, 2021
6WQS
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BU of 6wqs by Molmil
Xanthomonas citri Methionyl-tRNA synthetase in complex with REP8839
Descriptor: 2-{[3-({[4-bromo-5-(1-fluoroethenyl)-3-methylthiophen-2-yl]methyl}amino)propyl]amino}quinolin-4(1H)-one, Methionine--tRNA ligase, ZINC ION
Authors:Mercaldi, G.F, Benedetti, C.E.
Deposit date:2020-04-29
Release date:2021-04-21
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular basis for diaryldiamine selectivity and competition with tRNA in a type 2 methionyl-tRNA synthetase from a Gram-negative bacterium.
J.Biol.Chem., 296, 2021
6WQT
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BU of 6wqt by Molmil
Xanthomonas citri Methionyl-tRNA synthetase in complex with REP3123
Descriptor: 5-[(3-{[(4R)-6,8-dibromo-3,4-dihydro-2H-1-benzopyran-4-yl]amino}propyl)amino]thieno[3,2-b]pyridin-7(6H)-one, Methionine--tRNA ligase, ZINC ION
Authors:Mercaldi, G.F, Benedetti, C.E.
Deposit date:2020-04-29
Release date:2021-04-21
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Molecular basis for diaryldiamine selectivity and competition with tRNA in a type 2 methionyl-tRNA synthetase from a Gram-negative bacterium.
J.Biol.Chem., 296, 2021
6WQI
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BU of 6wqi by Molmil
Xanthomonas citri Methionyl-tRNA synthetase (apo)
Descriptor: Methionine--tRNA ligase, ZINC ION
Authors:Mercaldi, G.F, Benedetti, C.E.
Deposit date:2020-04-28
Release date:2021-04-21
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular basis for diaryldiamine selectivity and competition with tRNA in a type 2 methionyl-tRNA synthetase from a Gram-negative bacterium.
J.Biol.Chem., 296, 2021
2KQA
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BU of 2kqa by Molmil
The solution structure of the fungal elicitor Cerato-Platanin
Descriptor: Cerato-platanin
Authors:Oliveira, A.L, Gallo, M, Pazzagli, L, Cappugi, G, Scala, A, Cicero, D.O, Pantera, B, Spisni, A, Benedetti, C.E, Pertinhez, T.A.
Deposit date:2009-11-03
Release date:2011-03-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The solution structure of the fungal elicitor Cerato-Platanin
To be Published
2KQ5
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BU of 2kq5 by Molmil
Solution NMR structure of a section of the repeat domain of the type III effector protein PthA
Descriptor: Avirulence protein
Authors:Neves, J.L, Sforca, M.L, Murakami, M.T, Benedetti, C.E, Zeri, A.C.
Deposit date:2009-10-28
Release date:2010-09-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:An NMR-based structural model of the PthA repeat region reveals a TPR fold that would account for protein-protein and protein-DNA interactions
To be Published
7KMN
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BU of 7kmn by Molmil
Crystal structure of XAC1772, a GH35 xyloglucan-active beta-galactosidase from Xanthomonas citri
Descriptor: Beta-galactosidase, GH35 family, SULFATE ION
Authors:Vieira, P.S, Murakami, M.T.
Deposit date:2020-11-03
Release date:2021-05-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Xyloglucan processing machinery in Xanthomonas pathogens and its role in the transcriptional activation of virulence factors
Nature Communications, 12, 2021
7KMP
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BU of 7kmp by Molmil
Crystal structure of the GH31 alpha-xylosidase (Xac1773) from Xanthomonas citri
Descriptor: Alpha-xylosidase, GLYCEROL, POTASSIUM ION
Authors:Vieira, P.S, Murakami, M.T.
Deposit date:2020-11-03
Release date:2021-05-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.556 Å)
Cite:Xyloglucan processing machinery in Xanthomonas pathogens and its role in the transcriptional activation of virulence factors
Nature Communications, 12, 2021
7KMO
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BU of 7kmo by Molmil
Crystal structure of the GH35 beta-galactosidase (Xac1772) from Xanthomonas citri in complex with galactose
Descriptor: Beta-galactosidase, GH35, GLYCEROL, ...
Authors:Vieira, P.S, Murakami, M.T.
Deposit date:2020-11-03
Release date:2021-05-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.753 Å)
Cite:Xyloglucan processing machinery in Xanthomonas pathogens and its role in the transcriptional activation of virulence factors
Nature Communications, 12, 2021
7KMQ
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BU of 7kmq by Molmil
Crystal structure of the GH95 alpha-L-1,2-fucosidase (Xac1774) from Xanthomonas citri
Descriptor: CALCIUM ION, GLYCEROL, Glyco_hyd_65N_2 domain-containing protein
Authors:Vieira, P.S, Murakami, M.T.
Deposit date:2020-11-03
Release date:2021-05-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.045 Å)
Cite:Xyloglucan processing machinery in Xanthomonas pathogens and its role in the transcriptional activation of virulence factors
Nature Communications, 12, 2021
7KNC
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BU of 7knc by Molmil
Crystal structure of the GH31 alpha-xylosidase (Xac1773) from Xanthomonas citri
Descriptor: Alpha-xylosidase, GLYCEROL, POTASSIUM ION, ...
Authors:Vieira, P.S, Murakami, M.T.
Deposit date:2020-11-04
Release date:2021-05-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.873 Å)
Cite:Xyloglucan processing machinery in Xanthomonas pathogens and its role in the transcriptional activation of virulence factors
Nature Communications, 12, 2021
7KN8
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BU of 7kn8 by Molmil
Crystal structure of the GH74 xyloglucanase from Xanthomonas campestris (Xcc1752)
Descriptor: 1,2-ETHANEDIOL, Cellulase, IODIDE ION, ...
Authors:Araujo, E.A, Vieira, P.S, Murakami, M.T, Polikarpov, I.
Deposit date:2020-11-04
Release date:2021-05-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Xyloglucan processing machinery in Xanthomonas pathogens and its role in the transcriptional activation of virulence factors
Nature Communications, 12, 2021
7KMM
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BU of 7kmm by Molmil
Crystal structure of XAC1771, a novel carbohydrate acetylesterase from Xanthomonas citri
Descriptor: Sialic acid-specific 9-O-acetylesterase, ZINC ION
Authors:Vieira, P.S, Murakami, M.T.
Deposit date:2020-11-03
Release date:2021-05-26
Last modified:2021-07-07
Method:X-RAY DIFFRACTION (1.899 Å)
Cite:Xyloglucan processing machinery in Xanthomonas pathogens and its role in the transcriptional activation of virulence factors
Nature Communications, 12, 2021

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