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6N0T
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BU of 6n0t by Molmil
tRNA ligase
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, SULFATE ION, ...
Authors:Banerjee, A, Goldgur, Y, Shuman, S.
Deposit date:2018-11-07
Release date:2019-01-09
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.511 Å)
Cite:Structure and two-metal mechanism of fungal tRNA ligase.
Nucleic Acids Res., 47, 2019
6N0V
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BU of 6n0v by Molmil
tRNA ligase
Descriptor: MANGANESE (II) ION, tRNA ligase
Authors:Banerjee, A, Goldgur, Y, Shuman, S.
Deposit date:2018-11-07
Release date:2019-01-09
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (2.502 Å)
Cite:Structure and two-metal mechanism of fungal tRNA ligase.
Nucleic Acids Res., 47, 2019
5A8B
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BU of 5a8b by Molmil
Structure of a parallel dimer of the aureochrome 1a LOV domain from Phaeodactylum tricornutum
Descriptor: CHLORIDE ION, FLAVIN MONONUCLEOTIDE, GLYCEROL, ...
Authors:Banerjee, A, Herman, E, Kottke, T, Essen, L.O.
Deposit date:2015-07-14
Release date:2016-02-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.791 Å)
Cite:Structure of a Native-Like Aureochrome 1A Lov Domain Dimer from Phaeodactylum Tricornutum.
Structure, 24, 2016
1YQM
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BU of 1yqm by Molmil
Catalytically inactive human 8-oxoguanine glycosylase crosslinked to 7-deazaguanine containing DNA
Descriptor: 5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*C)-3', 5'-D(P*GP*TP*CP*CP*AP*(7GU)P*GP*TP*CP*TP*AP*C)-3', CALCIUM ION, ...
Authors:Banerjee, A, Yang, W, Karplus, M, Verdine, G.L.
Deposit date:2005-02-02
Release date:2005-04-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA.
Nature, 434, 2005
1YQR
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BU of 1yqr by Molmil
Catalytically inactive human 8-oxoguanine glycosylase crosslinked to oxoG containing DNA
Descriptor: 5'-D(P*CP*GP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*G)-3', CALCIUM ION, ...
Authors:Banerjee, A, Yang, W, Karplus, M, Verdine, G.L.
Deposit date:2005-02-02
Release date:2005-04-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA.
Nature, 434, 2005
1YQK
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BU of 1yqk by Molmil
Human 8-oxoguanine glycosylase crosslinked with guanine containing DNA
Descriptor: 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*G)-3', 5'-D(P*CP*AP*GP*GP*TP*CP*TP*AP*C)-3', CALCIUM ION, ...
Authors:Banerjee, A, Yang, W, Karplus, M, Verdine, G.L.
Deposit date:2005-02-01
Release date:2005-04-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA.
Nature, 434, 2005
1YQL
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BU of 1yql by Molmil
Catalytically inactive hOGG1 crosslinked with 7-deaza-8-azaguanine containing DNA
Descriptor: 5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*C)-3', 5'-D(P*GP*TP*CP*CP*AP*(PPW)P*GP*TP*CP*TP*AP*C)-3', CALCIUM ION, ...
Authors:Banerjee, A, Yang, W, Karplus, M, Verdine, G.L.
Deposit date:2005-02-02
Release date:2005-04-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA.
Nature, 434, 2005
4JTD
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BU of 4jtd by Molmil
Crystal structure of Kv1.2-2.1 paddle chimera channel in complex with Lys27Met mutant of Charybdotoxin
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, POTASSIUM ION, ...
Authors:Banerjee, A, Lee, A, Campbell, E, MacKinnon, R.
Deposit date:2013-03-23
Release date:2013-06-12
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Structure of a pore-blocking toxin in complex with a eukaryotic voltage-dependent K(+) channel.
Elife, 2, 2013
4JTC
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BU of 4jtc by Molmil
Crystal structure of Kv1.2-2.1 paddle chimera channel in complex with Charybdotoxin in Cs+
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, CESIUM ION, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Banerjee, A, Lee, A, Campbell, E, MacKinnon, R.
Deposit date:2013-03-23
Release date:2013-06-12
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Structure of a pore-blocking toxin in complex with a eukaryotic voltage-dependent K(+) channel.
Elife, 2, 2013
2F5N
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BU of 2f5n by Molmil
MutM crosslinked to undamaged DNA sampling A:T base pair IC1
Descriptor: 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*GP*GP*TP*CP*TP*AP*CP*C)-3', GLYCEROL, ...
Authors:Banerjee, A, Santos, W.L, Verdine, G.L.
Deposit date:2005-11-26
Release date:2006-03-07
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a DNA glycosylase searching for lesions.
Science, 311, 2006
2F5S
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BU of 2f5s by Molmil
Catalytically inactive (E3Q) MutM crosslinked to oxoG:C containing DNA CC1
Descriptor: 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*(8OG)P*AP*GP*TP*CP*TP*AP*CP*C)-3', ZINC ION, ...
Authors:Banerjee, A, Santos, W.L, Verdine, G.L.
Deposit date:2005-11-26
Release date:2006-03-07
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure of a DNA glycosylase searching for lesions.
Science, 311, 2006
2F5O
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BU of 2f5o by Molmil
MutM crosslinked to undamaged DNA sampling G:C base pair IC3
Descriptor: 5'-D(*AP*GP*GP*TP*AP*GP*AP*TP*CP*CP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*GP*GP*AP*TP*CP*TP*AP*CP*C)-3', GLYCEROL, ...
Authors:Banerjee, A, Santos, W.L, Verdine, G.L.
Deposit date:2005-11-26
Release date:2006-03-07
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure of a DNA glycosylase searching for lesions.
Science, 311, 2006
2F5Q
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BU of 2f5q by Molmil
Catalytically inactive (E3Q) MutM crosslinked to oxoG:C containing DNA CC2
Descriptor: 5'-D(*AP*GP*G*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*CP*G*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', ZINC ION, ...
Authors:Banerjee, A, Santos, W.L, Verdine, G.L.
Deposit date:2005-11-26
Release date:2006-03-07
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure of a DNA glycosylase searching for lesions.
Science, 311, 2006
2F5P
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BU of 2f5p by Molmil
MutM crosslinked to undamaged DNA sampling A:T base pair IC2
Descriptor: 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*TP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*CP*G*TP*CP*CP*AP*AP*GP*TP*CP*TP*AP*CP*C)-3', ZINC ION, ...
Authors:Banerjee, A, Santos, W.L, Verdine, G.L.
Deposit date:2005-11-26
Release date:2006-03-07
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a DNA glycosylase searching for lesions.
Science, 311, 2006
2I5W
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BU of 2i5w by Molmil
Structure of hOGG1 crosslinked to DNA sampling a normal G adjacent to an oxoG
Descriptor: 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*A)-3', 5'-D(P*CP*CP*AP*GP*(G42)P*TP*CP*TP*AP*C)-3', CALCIUM ION, ...
Authors:Banerjee, A, Verdine, G.L.
Deposit date:2006-08-26
Release date:2006-10-17
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A nucleobase lesion remodels the interaction of its normal neighbor in a DNA glycosylase complex.
Proc.Natl.Acad.Sci.Usa, 103, 2006
6EDE
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BU of 6ede by Molmil
tRNA 2'-phosphotransferase
Descriptor: Probable RNA 2'-phosphotransferase, [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate
Authors:Shuman, S, Goldgur, Y, Banerjee, A.
Deposit date:2018-08-09
Release date:2019-03-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.553 Å)
Cite:Structure of tRNA splicing enzyme Tpt1 illuminates the mechanism of RNA 2'-PO4recognition and ADP-ribosylation.
Nat Commun, 10, 2019
6E3A
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BU of 6e3a by Molmil
tRNA 2'-phosphotransferase
Descriptor: COENZYME A, Probable RNA 2'-phosphotransferase, [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate
Authors:Shuman, S, Goldgur, Y, Banerjee, A.
Deposit date:2018-07-13
Release date:2019-03-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure of tRNA splicing enzyme Tpt1 illuminates the mechanism of RNA 2'-PO4recognition and ADP-ribosylation.
Nat Commun, 10, 2019
6U05
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BU of 6u05 by Molmil
Crystal Structure of Fungal RNA Kinase
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Shuman, S, Goldgur, Y, Banerjee, A.
Deposit date:2019-08-13
Release date:2019-11-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.948 Å)
Cite:Atomic structures of the RNA end-healing 5'-OH kinase and 2',3'-cyclic phosphodiesterase domains of fungal tRNA ligase: conformational switches in the kinase upon binding of the GTP phosphate donor.
Nucleic Acids Res., 47, 2019
6TZX
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BU of 6tzx by Molmil
Crystal Structure of Fungal RNA Kinase
Descriptor: INOSINE-5'-DIPHOSPHATE, PHOSPHATE ION, tRNA ligase
Authors:Shuman, S, Goldgur, Y, Banerjee, A.
Deposit date:2019-08-13
Release date:2019-11-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.529 Å)
Cite:Atomic structures of the RNA end-healing 5'-OH kinase and 2',3'-cyclic phosphodiesterase domains of fungal tRNA ligase: conformational switches in the kinase upon binding of the GTP phosphate donor.
Nucleic Acids Res., 47, 2019
6U03
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BU of 6u03 by Molmil
Crystal Structure of Fungal RNA Kinase
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, tRNA ligase
Authors:Shuman, S, Goldgur, Y, Banerjee, A.
Deposit date:2019-08-13
Release date:2019-11-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.849 Å)
Cite:Atomic structures of the RNA end-healing 5'-OH kinase and 2',3'-cyclic phosphodiesterase domains of fungal tRNA ligase: conformational switches in the kinase upon binding of the GTP phosphate donor.
Nucleic Acids Res., 47, 2019
6U00
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BU of 6u00 by Molmil
Crystal Structure of Fungal RNA Kinase
Descriptor: PHOSPHATE ION, tRNA ligase
Authors:Shuman, S, Goldgur, Y, Banerjee, A.
Deposit date:2019-08-13
Release date:2019-11-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.981 Å)
Cite:Atomic structures of the RNA end-healing 5'-OH kinase and 2',3'-cyclic phosphodiesterase domains of fungal tRNA ligase: conformational switches in the kinase upon binding of the GTP phosphate donor.
Nucleic Acids Res., 47, 2019
6TZO
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BU of 6tzo by Molmil
Crystal Structure of Fungal RNA Kinase
Descriptor: 2'-DEOXYGUANOSINE-5'-DIPHOSPHATE, PHOSPHATE ION, tRNA ligase
Authors:Shuman, S, Goldgur, Y, Banerjee, A.
Deposit date:2019-08-12
Release date:2019-11-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Atomic structures of the RNA end-healing 5'-OH kinase and 2',3'-cyclic phosphodiesterase domains of fungal tRNA ligase: conformational switches in the kinase upon binding of the GTP phosphate donor.
Nucleic Acids Res., 47, 2019
6TZM
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BU of 6tzm by Molmil
Crystal Structure of Fungal RNA Kinase
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, tRNA ligase
Authors:Shuman, S, Goldgur, Y, Banerjee, A.
Deposit date:2019-08-12
Release date:2019-11-06
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.714 Å)
Cite:Atomic structures of the RNA end-healing 5'-OH kinase and 2',3'-cyclic phosphodiesterase domains of fungal tRNA ligase: conformational switches in the kinase upon binding of the GTP phosphate donor.
Nucleic Acids Res., 47, 2019
3GPU
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BU of 3gpu by Molmil
MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC4-loop deletion complex
Descriptor: DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*(8OG)P*AP*GP*TP*CP*TP*AP*CP*C)-3'), DNA glycosylase, ...
Authors:Banerjee, A, Qi, Y, Verdine, G.L.
Deposit date:2009-03-23
Release date:2009-11-10
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme.
Nature, 462, 2009
3GQ3
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BU of 3gq3 by Molmil
MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC5-loop deletion complex
Descriptor: DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*GP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3'), DNA glycosylase, ...
Authors:Banerjee, A, Qi, Y, Verdine, G.L.
Deposit date:2009-03-23
Release date:2009-11-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme.
Nature, 462, 2009

 

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