Author results

4JTC
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CRYSTAL STRUCTURE OF KV1.2-2.1 PADDLE CHIMERA CHANNEL IN COMPLEX WITH CHARYBDOTOXIN IN CS+
Descriptor:Voltage-gated potassium channel subunit beta-2, Potassium voltage-gated channel subfamily A member 2, Potassium voltage-gated channel subfamily B member 1, ...
Authors:Banerjee, A., Lee, A., Campbell, E., MacKinnon, R.
Deposit date:2013-03-23
Release date:2013-06-12
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Structure of a pore-blocking toxin in complex with a eukaryotic voltage-dependent K(+) channel.
Elife, 2, 2013
4JTD
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CRYSTAL STRUCTURE OF KV1.2-2.1 PADDLE CHIMERA CHANNEL IN COMPLEX WITH LYS27MET MUTANT OF CHARYBDOTOXIN
Descriptor:Voltage-gated potassium channel subunit beta-2, Potassium voltage-gated channel subfamily A member 2, Potassium voltage-gated channel subfamily B member 1, ...
Authors:Banerjee, A., Lee, A., Campbell, E., MacKinnon, R.
Deposit date:2013-03-23
Release date:2013-06-12
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Structure of a pore-blocking toxin in complex with a eukaryotic voltage-dependent K(+) channel.
Elife, 2, 2013
1YQK
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HUMAN 8-OXOGUANINE GLYCOSYLASE CROSSLINKED WITH GUANINE CONTAINING DNA
Descriptor:5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*G)-3', 5'-D(P*CP*AP*GP*GP*TP*CP*TP*AP*C)-3', N-glycosylase/DNA lyase, ...
Authors:Banerjee, A., Yang, W., Karplus, M., Verdine, G.L.
Deposit date:2005-02-01
Release date:2005-04-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA.
Nature, 434, 2005
1YQL
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CATALYTICALLY INACTIVE HOGG1 CROSSLINKED WITH 7-DEAZA-8-AZAGUANINE CONTAINING DNA
Descriptor:5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*C)-3', 5'-D(P*GP*TP*CP*CP*AP*(PPW)P*GP*TP*CP*TP*AP*C)-3', N-glycosylase/DNA lyase, ...
Authors:Banerjee, A., Yang, W., Karplus, M., Verdine, G.L.
Deposit date:2005-02-02
Release date:2005-04-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA.
Nature, 434, 2005
1YQM
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CATALYTICALLY INACTIVE HUMAN 8-OXOGUANINE GLYCOSYLASE CROSSLINKED TO 7-DEAZAGUANINE CONTAINING DNA
Descriptor:5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*C)-3', 5'-D(P*GP*TP*CP*CP*AP*(7GU)P*GP*TP*CP*TP*AP*C)-3', N-glycosylase/DNA lyase, ...
Authors:Banerjee, A., Yang, W., Karplus, M., Verdine, G.L.
Deposit date:2005-02-02
Release date:2005-04-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA.
Nature, 434, 2005
1YQR
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CATALYTICALLY INACTIVE HUMAN 8-OXOGUANINE GLYCOSYLASE CROSSLINKED TO OXOG CONTAINING DNA
Descriptor:5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*G)-3', 5'-D(P*CP*GP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', N-glycosylase/DNA lyase, ...
Authors:Banerjee, A., Yang, W., Karplus, M., Verdine, G.L.
Deposit date:2005-02-02
Release date:2005-04-05
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA.
Nature, 434, 2005
2F5N
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MUTM CROSSLINKED TO UNDAMAGED DNA SAMPLING A:T BASE PAIR IC1
Descriptor:5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*GP*GP*TP*CP*TP*AP*CP*C)-3', formamidopyrimidine-DNA glycosidase, ...
Authors:Banerjee, A., Santos, W.L., Verdine, G.L.
Deposit date:2005-11-26
Release date:2006-03-07
Last modified:2015-07-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a DNA glycosylase searching for lesions.
Science, 311, 2006
2F5O
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MUTM CROSSLINKED TO UNDAMAGED DNA SAMPLING G:C BASE PAIR IC3
Descriptor:5'-D(*AP*GP*GP*TP*AP*GP*AP*TP*CP*CP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*GP*GP*AP*TP*CP*TP*AP*CP*C)-3', formamidopyrimidine-DNA glycosidase, ...
Authors:Banerjee, A., Santos, W.L., Verdine, G.L.
Deposit date:2005-11-26
Release date:2006-03-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure of a DNA glycosylase searching for lesions.
Science, 311, 2006
2F5P
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MUTM CROSSLINKED TO UNDAMAGED DNA SAMPLING A:T BASE PAIR IC2
Descriptor:5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*TP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*CP*G*TP*CP*CP*AP*AP*GP*TP*CP*TP*AP*CP*C)-3', formamidopyrimidine-DNA glycosidase, ...
Authors:Banerjee, A., Santos, W.L., Verdine, G.L.
Deposit date:2005-11-26
Release date:2006-03-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a DNA glycosylase searching for lesions.
Science, 311, 2006
2F5Q
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CATALYTICALLY INACTIVE (E3Q) MUTM CROSSLINKED TO OXOG:C CONTAINING DNA CC2
Descriptor:5'-D(*AP*GP*G*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*CP*G*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', formamidopyrimidine-DNA glycosidase, ...
Authors:Banerjee, A., Santos, W.L., Verdine, G.L.
Deposit date:2005-11-26
Release date:2006-03-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure of a DNA glycosylase searching for lesions.
Science, 311, 2006
2F5S
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CATALYTICALLY INACTIVE (E3Q) MUTM CROSSLINKED TO OXOG:C CONTAINING DNA CC1
Descriptor:5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*(8OG)P*AP*GP*TP*CP*TP*AP*CP*C)-3', formamidopyrimidine-DNA glycosidase, ...
Authors:Banerjee, A., Santos, W.L., Verdine, G.L.
Deposit date:2005-11-26
Release date:2006-03-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure of a DNA glycosylase searching for lesions.
Science, 311, 2006
2I5W
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STRUCTURE OF HOGG1 CROSSLINKED TO DNA SAMPLING A NORMAL G ADJACENT TO AN OXOG
Descriptor:5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*A)-3', 5'-D(P*CP*CP*AP*GP*(G42)P*TP*CP*TP*AP*C)-3', N-glycosylase/DNA lyase, ...
Authors:Banerjee, A., Verdine, G.L.
Deposit date:2006-08-26
Release date:2006-10-17
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A nucleobase lesion remodels the interaction of its normal neighbor in a DNA glycosylase complex.
Proc.Natl.Acad.Sci.Usa, 103, 2006
5A8B
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STRUCTURE OF A PARALLEL DIMER OF THE AUREOCHROME 1A LOV DOMAIN FROM PHAEODACTYLUM TRICORNUTUM
Descriptor:PTAUREO1A LOV2 DOMAIN, FLAVIN MONONUCLEOTIDE, CHLORIDE ION, ...
Authors:Banerjee, A., Herman, E., Kottke, T., Essen, L.O.
Deposit date:2015-07-14
Release date:2016-02-10
Method:X-RAY DIFFRACTION (2.791 Å)
Cite:Structure of a Native-Like Aureochrome 1A Lov Domain Dimer from Phaeodactylum Tricornutum.
Structure, 24, 2016
6N0T
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TRNA LIGASE
Descriptor:tRNA ligase, SULFATE ION, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Banerjee, A., Goldgur, Y., Shuman, S.
Deposit date:2018-11-07
Release date:2019-01-09
Method:X-RAY DIFFRACTION (2.511 Å)
Cite:Structure and two-metal mechanism of fungal tRNA ligase.
Nucleic Acids Res., 2018
6N0V
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TRNA LIGASE
Descriptor:tRNA ligase, MANGANESE (II) ION
Authors:Banerjee, A., Goldgur, Y., Shuman, S.
Deposit date:2018-11-07
Release date:2019-01-09
Method:X-RAY DIFFRACTION (2.502 Å)
Cite:Structure and two-metal mechanism of fungal tRNA ligase.
Nucleic Acids Res., 2018
4JTA
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CRYSTAL STRUCTURE OF KV1.2-2.1 PADDLE CHIMERA CHANNEL IN COMPLEX WITH CHARYBDOTOXIN
Descriptor:Voltage-gated potassium channel subunit beta-2, Potassium voltage-gated channel subfamily A member 2, Potassium voltage-gated channel subfamily B member 1, ...
Authors:MacKinnon, R., Banerjee, A., Lee, A., Campbell, E.
Deposit date:2013-03-23
Release date:2013-06-12
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of a pore-blocking toxin in complex with a eukaryotic voltage-dependent K(+) channel.
Elife, 2, 2013
6E3A
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TRNA 2'-PHOSPHOTRANSFERASE
Descriptor:Probable RNA 2'-phosphotransferase, COENZYME A, [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate
Authors:Shuman, S., Goldgur, Y., Banerjee, A.
Deposit date:2018-07-13
Release date:2019-03-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure of tRNA splicing enzyme Tpt1 illuminates the mechanism of RNA 2'-PO4recognition and ADP-ribosylation.
Nat Commun, 10, 2019
6EDE
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TRNA 2'-PHOSPHOTRANSFERASE
Descriptor:Probable RNA 2'-phosphotransferase, [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate
Authors:Shuman, S., Goldgur, Y., Banerjee, A.
Deposit date:2018-08-09
Release date:2019-03-20
Method:X-RAY DIFFRACTION (1.553 Å)
Cite:Structure of tRNA splicing enzyme Tpt1 illuminates the mechanism of RNA 2'-PO4recognition and ADP-ribosylation.
Nat Commun, 10, 2019
2NOL
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STRUCTURE OF CATALYTICALLY INACTIVE HUMAN 8-OXOGUANINE GLYCOSYLASE DISTAL CROSSLINK TO OXOG DNA
Descriptor:5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*CP*CP*AP*(G42)P*GP*TP*CP*TP*AP*CP*C)-3', N-glycosylase/DNA lyase, ...
Authors:Banerjee, A., Radom, C.T., Verdine, G.L.
Deposit date:2006-10-25
Release date:2006-11-21
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Structural characterization of human 8-oxoguanine DNA glycosylase variants bearing active site mutations.
J.Biol.Chem., 282, 2007
3GPU
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MUTM ENCOUNTERING AN INTRAHELICAL 8-OXOGUANINE (OXOG) LESION IN EC4-LOOP DELETION COMPLEX
Descriptor:DNA glycosylase, DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*(8OG)P*AP*GP*TP*CP*TP*AP*CP*C)-3'), ...
Authors:Banerjee, A., Qi, Y., Verdine, G.L.
Deposit date:2009-03-23
Release date:2009-11-10
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme.
Nature, 462, 2009
3GQ3
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MUTM ENCOUNTERING AN INTRAHELICAL 8-OXOGUANINE (OXOG) LESION IN EC5-LOOP DELETION COMPLEX
Descriptor:DNA glycosylase, DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*GP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3'), ...
Authors:Banerjee, A., Qi, Y., Verdine, G.L.
Deposit date:2009-03-23
Release date:2009-11-10
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme.
Nature, 462, 2009
3SAR
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MUTM SLANTED COMPLEX 1
Descriptor:Formamidopyrimidine-DNA glycosylase, 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*GP*GP*TP*(CX2) P*TP*AP*CP*C)-3', ...
Authors:Banerjee, A., Qi, Y., Spong, M.C., Verdine, G.L.
Deposit date:2011-06-03
Release date:2012-01-11
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Strandwise translocation of a DNA glycosylase on undamaged DNA.
Proc.Natl.Acad.Sci.USA, 109, 2012
5W7I
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X-RAY STRUCTURE OF ANKYRIN REPEAT DOMAIN OF DHHC17 IN COMPLEX WITH SNAP25B PEPTIDE
Descriptor:Palmitoyltransferase ZDHHC17, Snap25b-111-120
Authors:Verardi, R., Kim, J.-S., Ghirlando, R., Banerjee, A.
Deposit date:2017-06-20
Release date:2017-08-09
Last modified:2017-09-20
Method:X-RAY DIFFRACTION (2.105 Å)
Cite:Structural Basis for Substrate Recognition by the Ankyrin Repeat Domain of Human DHHC17 Palmitoyltransferase.
Structure, 25, 2017
5ZHP
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M3 MUSCARINIC ACETYLCHOLINE RECEPTOR IN COMPLEX WITH A SELECTIVE ANTAGONIST
Descriptor:Muscarinic acetylcholine receptor M3,Endolysin,Endolysin,Muscarinic acetylcholine receptor M3, TETRAETHYLENE GLYCOL, MALTOSE, ...
Authors:Liu, H., Hofmann, J., Fish, I., Schaake, B., Eitel, K., Bartuschat, A., Kaindl, J., Rampp, H., Banerjee, A., Hubner, H., Clark, M.J., Vincent, S.G., Fisher, J., Heinrich, M., Hirata, K., Liu, X., Sunahara, R.K., Shoichet, B.K., Kobilka, B.K., Gmeiner, P.
Deposit date:2018-03-13
Release date:2018-11-28
Last modified:2018-12-05
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure-guided development of selective M3 muscarinic acetylcholine receptor antagonists
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
1RRQ
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MUTY ADENINE GLYCOSYLASE IN COMPLEX WITH DNA CONTAINING AN A:OXOG PAIR
Descriptor:5'-D(AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3', 5'-D(*TP*GP*TP*CP*CP*AP*AP*GP*TP*CP*T)-3', MutY, ...
Authors:Fromme, J.C., Banerjee, A., Huang, S.J., Verdine, G.L.
Deposit date:2003-12-08
Release date:2004-02-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Structural basis for removal of adenine mispaired with 8-oxoguanine by MutY adenine DNA glycosylase
Nature, 427, 2004
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