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4YMK
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BU of 4ymk by Molmil
Crystal Structure of Stearoyl-Coenzyme A Desaturase 1
Descriptor: Acyl-CoA desaturase 1, STEAROYL-COENZYME A, ZINC ION, ...
Authors:Bai, Y, McCoy, J.G, Rajashankar, K.R, Zhou, M.
Deposit date:2015-03-06
Release date:2015-06-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.605 Å)
Cite:X-ray structure of a mammalian stearoyl-CoA desaturase.
Nature, 524, 2015
6UZ8
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BU of 6uz8 by Molmil
Cryo-EM structure of human TRPC6 in complex with agonist AM-0883
Descriptor: (5-chloro-1'H-spiro[indole-3,4'-piperidin]-1'-yl)[(2R)-2,3-dihydro-1,4-benzodioxin-2-yl]methanone, 2-[[(2~{S})-2-decanoyloxy-3-dodecanoyloxy-propoxy]-oxidanyl-phosphoryl]oxyethyl-trimethyl-azanium, CHOLESTEROL HEMISUCCINATE, ...
Authors:Bai, Y, Yu, X, Huang, X, Chen, H.
Deposit date:2019-11-14
Release date:2020-03-18
Method:ELECTRON MICROSCOPY (2.84 Å)
Cite:Structural basis for pharmacological modulation of the TRPC6 channel.
Elife, 9, 2020
6UZA
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BU of 6uza by Molmil
Cryo-EM structure of human TRPC6 in complex with antagonist AM-1473
Descriptor: 2-[[(2~{S})-2-decanoyloxypropoxy]-oxidanyl-phosphoryl]oxyethyl-trimethyl-azanium, 4-({(1R,2R)-2-[(3R)-3-aminopiperidin-1-yl]-2,3-dihydro-1H-inden-1-yl}oxy)benzonitrile, CHOLESTEROL HEMISUCCINATE, ...
Authors:Bai, Y, Yu, X, Huang, X, Chen, H.
Deposit date:2019-11-14
Release date:2020-03-18
Method:ELECTRON MICROSCOPY (3.08 Å)
Cite:Structural basis for pharmacological modulation of the TRPC6 channel.
Elife, 9, 2020
3EJ5
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BU of 3ej5 by Molmil
complex of Ricin A chain and pyrimidine-based inhibitor
Descriptor: 4-[3-(2-amino-4-hydroxy-6-oxo-1,6-dihydropyrimidin-5-yl)propyl]benzoic acid, Ricin A chain
Authors:Bai, Y, Monzingo, A.F, Robertus, J.D.
Deposit date:2008-09-17
Release date:2009-04-07
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The X-ray structure of ricin A chain with a novel inhibitor
Arch.Biochem.Biophys., 483, 2009
3PQ1
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BU of 3pq1 by Molmil
Crystal structure of human mitochondrial poly(A) polymerase (PAPD1)
Descriptor: Poly(A) RNA polymerase
Authors:Bai, Y, Srivastava, S.K, Chang, J.H, Tong, L.
Deposit date:2010-11-25
Release date:2011-03-30
Last modified:2017-08-02
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural basis for dimerization and activity of human PAPD1, a noncanonical poly(A) polymerase.
Mol.Cell, 41, 2011
5CI9
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BU of 5ci9 by Molmil
Crystal structure of human Tob in complex with inhibitor fragment 6
Descriptor: 1-(propan-2-yl)-1H-benzimidazole-5-carboxylic acid, Protein Tob1, SODIUM ION
Authors:Bai, Y, Tashiro, S, Nagatoishi, S, Suzuki, T, Tsumoto, K, Bartlam, M, Yamamoto, T.
Deposit date:2015-07-11
Release date:2015-11-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for inhibition of the Tob-CNOT7 interaction by a fragment screening approach
Protein Cell, 6, 2015
5CI8
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BU of 5ci8 by Molmil
Crystal structure of human Tob in complex with inhibitor fragment 1
Descriptor: Protein Tob1, pyrrolo[1,2-a]quinoxalin-4(5H)-one
Authors:Bai, Y, Tashiro, S, Nagatoishi, S, Suzuki, T, Tsumoto, K, Bartlam, M, Yamamoto, T.
Deposit date:2015-07-11
Release date:2015-11-18
Last modified:2015-12-09
Method:X-RAY DIFFRACTION (2.328 Å)
Cite:Structural basis for inhibition of the Tob-CNOT7 interaction by a fragment screening approach
Protein Cell, 6, 2015
2OOE
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BU of 2ooe by Molmil
Crystal structure of HAT domain of murine CstF-77
Descriptor: Cleavage stimulation factor 77 kDa subunit
Authors:Bai, Y, Auperin, T.C, Chou, C.-Y, Chang, G.-G, Manley, J.L, Tong, L.
Deposit date:2007-01-25
Release date:2007-04-10
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal Structure of Murine CstF-77: Dimeric Association and Implications for Polyadenylation of mRNA Precursors.
Mol.Cell, 25, 2007
2OND
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BU of 2ond by Molmil
Crystal Structure of the HAT-C domain of murine CstF-77
Descriptor: Cleavage stimulation factor 77 kDa subunit
Authors:Bai, Y, Auperin, T.C, Chou, C.-Y, Chang, G.-G, Manley, J.L, Tong, L.
Deposit date:2007-01-23
Release date:2007-04-10
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of Murine CstF-77: Dimeric Association and Implications for Polyadenylation of mRNA Precursors.
Mol.Cell, 25, 2007
2K8F
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BU of 2k8f by Molmil
Structural Basis for the Regulation of p53 Function by p300
Descriptor: Cellular tumor antigen p53, Histone acetyltransferase p300
Authors:Bai, Y, Feng, H, Jenkins, L.M, Durell, S.R, Wiodawer, A, Appella, E.
Deposit date:2008-09-08
Release date:2009-03-03
Last modified:2021-10-20
Method:SOLUTION NMR
Cite:Structural Basis for p300 Taz2-p53 TAD1 Binding and Modulation by Phosphorylation.
Structure, 17, 2009
5JBF
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BU of 5jbf by Molmil
4,6-alpha-glucanotransferase GTFB (D1015N mutant) from Lactobacillus reuteri 121 complexed with maltopentaose
Descriptor: CALCIUM ION, Inactive glucansucrase, SULFATE ION, ...
Authors:Pijning, T, Dijkstra, B.W, Bai, Y, Gangoiti-Munecas, J, Dijkhuizen, L.
Deposit date:2016-04-13
Release date:2017-01-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Crystal Structure of 4,6-alpha-Glucanotransferase Supports Diet-Driven Evolution of GH70 Enzymes from alpha-Amylases in Oral Bacteria.
Structure, 25, 2017
5JBD
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BU of 5jbd by Molmil
4,6-alpha-glucanotransferase GTFB from Lactobacillus reuteri 121
Descriptor: ACETATE ION, CALCIUM ION, GLYCEROL, ...
Authors:Pijning, T, Dijkstra, B.W, Bai, Y, Gangoiti-Munecas, J, Dijkhuizen, L.
Deposit date:2016-04-13
Release date:2017-01-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of 4,6-alpha-Glucanotransferase Supports Diet-Driven Evolution of GH70 Enzymes from alpha-Amylases in Oral Bacteria.
Structure, 25, 2017
5JBE
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BU of 5jbe by Molmil
4,6-alpha-glucanotransferase GTFB from Lactobacillus reuteri 121 complexed with an isomalto-maltopentasaccharide
Descriptor: ACETATE ION, CALCIUM ION, Inactive glucansucrase, ...
Authors:Pijning, T, Dijkstra, B.W, Bai, Y, Gangoiti-Munecas, J, Dijkhuizen, L.
Deposit date:2016-04-13
Release date:2017-01-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of 4,6-alpha-Glucanotransferase Supports Diet-Driven Evolution of GH70 Enzymes from alpha-Amylases in Oral Bacteria.
Structure, 25, 2017
3RZ2
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BU of 3rz2 by Molmil
Crystal of Prl-1 complexed with peptide
Descriptor: Prl-1 (PTP4A1), Protein tyrosine phosphatase type IVA 1
Authors:Zhang, Z.-Y, Liu, D, Bai, Y.
Deposit date:2011-05-11
Release date:2011-10-26
Last modified:2014-10-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:PRL-1 protein promotes ERK1/2 and RhoA protein activation through a non-canonical interaction with the Src homology 3 domain of p115 Rho GTPase-activating protein.
J.Biol.Chem., 286, 2011
2MIA
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BU of 2mia by Molmil
Solution structure of allatide C4, conformation 2
Descriptor: alpha amylase inhibitor
Authors:Bai, Y, Pervushin, K.
Deposit date:2013-12-12
Release date:2015-01-14
Last modified:2015-03-25
Method:SOLUTION NMR
Cite:Allotides: Proline-rich Cystine Knot alpha-Amylase Inhibitors from the Allamanda cathartica
To be Published
2MI9
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BU of 2mi9 by Molmil
Solution structure of allatide C4, conformation 1
Descriptor: alpha amylase inhibitor
Authors:Bai, Y, Pervushin, K.
Deposit date:2013-12-12
Release date:2015-01-14
Last modified:2015-03-25
Method:SOLUTION NMR
Cite:Allotides: Proline-rich Cystine Knot alpha-Amylase Inhibitors from the Allamanda cathartica
To be Published
1M6T
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BU of 1m6t by Molmil
CRYSTAL STRUCTURE OF B562RIL, A REDESIGNED FOUR HELIX BUNDLE
Descriptor: SULFATE ION, Soluble cytochrome b562
Authors:Chu, R, Takei, J, Knowlton, J.R, Andrykovitch, M, Pei, W, Kajava, A.V, Steinbach, P.J, Ji, X, Bai, Y.
Deposit date:2002-07-17
Release date:2002-11-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Redesign of a Four-Helix Bundle Protein by Phage Display Coupled with Proteolysis and Structural Characterization by NMR and X-ray Crystallography
J.Mol.Biol., 323, 2002
2JSS
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BU of 2jss by Molmil
NMR structure of chaperone Chz1 complexed with histone H2A.Z-H2B
Descriptor: Chimera of Histone H2B.1 and Histone H2A.Z, Uncharacterized protein YER030W
Authors:Zhou, Z, Feng, H, Hansen, D.F, Kato, H, Luk, E, Freedberg, D.I, Kay, L.E, Wu, C, Bai, Y.
Deposit date:2007-07-11
Release date:2008-05-20
Last modified:2021-08-18
Method:SOLUTION NMR
Cite:NMR structure of chaperone Chz1 complexed with histones H2A.Z-H2B.
Nat.Struct.Mol.Biol., 15, 2008
8DK5
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BU of 8dk5 by Molmil
Structure of 187bp LIN28b nucleosome with site 0 mutation
Descriptor: DNA (187-MER), Histone H2A type 2-C, Histone H2B type 2-E, ...
Authors:Lian, T, Guan, R, Bai, Y.
Deposit date:2022-07-02
Release date:2023-06-28
Method:ELECTRON MICROSCOPY (2.71 Å)
Cite:Structural mechanism of LIN28B nucleosome targeting by OCT4.
Mol.Cell, 83, 2023
8SPS
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BU of 8sps by Molmil
High resolution structure of ESRRB nucleosome bound OCT4 at site a and site b
Descriptor: DNA (168-MER), Histone H2A type 2-C, Histone H2B type 2-E, ...
Authors:Lian, T, Guan, R, Bai, Y.
Deposit date:2023-05-03
Release date:2023-06-28
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural mechanism of LIN28B nucleosome targeting by OCT4.
Mol.Cell, 83, 2023
8SPU
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BU of 8spu by Molmil
Structure of ESRRB nucleosome bound OCT4 at site c
Descriptor: DNA (168-MER), Histone H2A type 2-C, Histone H2B type 2-E, ...
Authors:Lian, T, Guan, R, Bai, Y.
Deposit date:2023-05-03
Release date:2023-06-28
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structural mechanism of LIN28B nucleosome targeting by OCT4.
Mol.Cell, 83, 2023
8SYP
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BU of 8syp by Molmil
Genomic CX3CR1 nucleosome
Descriptor: DNA (162-MER), Histone H2A type 2-C, Histone H2B type 2-E, ...
Authors:Lian, T, Guan, R, Bai, Y.
Deposit date:2023-05-25
Release date:2023-11-01
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Structural mechanism of synergistic targeting of the CX3CR1 nucleosome by PU.1 and C/EBP alpha.
Nat.Struct.Mol.Biol., 2024
4TQ6
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BU of 4tq6 by Molmil
Structure of a UbiA homolog from Archaeoglobus fulgidus bound to Cd2+
Descriptor: CADMIUM ION, prenyltransferase
Authors:Huang, H, Levin, E.J, Bai, Y, Zhou, M, New York Consortium on Membrane Protein Structure (NYCOMPS)
Deposit date:2014-06-10
Release date:2014-07-16
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.0678 Å)
Cite:Structure of a Membrane-Embedded Prenyltransferase Homologous to UBIAD1.
Plos Biol., 12, 2014
4TQ5
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BU of 4tq5 by Molmil
Structure of a UbiA homolog from Archaeoglobus fulgidus
Descriptor: octyl beta-D-glucopyranoside, prenyltransferase
Authors:Huang, H, Levin, E.J, Bai, Y, Zhou, M, New York Consortium on Membrane Protein Structure (NYCOMPS)
Deposit date:2014-06-10
Release date:2014-07-16
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.2023 Å)
Cite:Structure of a Membrane-Embedded Prenyltransferase Homologous to UBIAD1.
Plos Biol., 12, 2014
4TQ4
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BU of 4tq4 by Molmil
Structure of a UbiA homolog from Archaeoglobus fulgidus bound to DMAPP and Mg2+
Descriptor: DIMETHYLALLYL DIPHOSPHATE, MAGNESIUM ION, prenyltransferase
Authors:Huang, H, Levin, E.J, Bai, Y, Zhou, M, New York Consortium on Membrane Protein Structure (NYCOMPS)
Deposit date:2014-06-10
Release date:2014-07-16
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.5025 Å)
Cite:Structure of a Membrane-Embedded Prenyltransferase Homologous to UBIAD1.
Plos Biol., 12, 2014

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PDB entries from 2024-03-27

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