Author results

2D17
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SOLUTION RNA STRUCTURE OF STEM-BULGE-STEM REGION OF THE HIV-1 DIMERIZATION INITIATION SITE
分子名称:5'-R(*CP*GP*GP*CP*AP*AP*GP*AP*GP*GP*CP*GP*AP*CP*CP*C)-3', 5'-R(*GP*GP*GP*UP*CP*GP*GP*CP*UP*UP*GP*CP*UP*G)-3'
著者Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
登録日2005-08-15
公開日2005-11-01
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D18
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SOLUTION RNA STRUCTURE OF LOOP REGION OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE EXTENDED-DUPLEX DIMER
分子名称:5'-R(*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*GP*GP*C)-3'
著者Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
登録日2005-08-15
公開日2005-11-01
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D19
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SOLUTION RNA STRUCTURE OF LOOP REGION OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE KISSING-LOOP DIMER
分子名称:5'-R(*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*GP*GP*C)-3'
著者Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
登録日2005-08-15
公開日2005-11-01
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D1A
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SOLUTION RNA STRUCTURE MODEL OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE EXTENDED-DUPLEX DIMER
分子名称:RNA
著者Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
登録日2005-08-15
公開日2005-11-01
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D1B
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SOLUTION RNA STRUCTURE MODEL OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE KISSING-LOOP DIMER
分子名称:RNA
著者Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
登録日2005-08-15
公開日2005-11-01
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2YWB
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CRYSTAL STRUCTURE OF GMP SYNTHETASE FROM THERMUS THERMOPHILUS
分子名称:GMP synthase [glutamine-hydrolyzing]
著者Baba, S., Kanagawa, M., Yanai, H., Ishii, T., Kuramitsu, S., Yokoyama, S., Sampei, G., Kawai, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-20
公開日2007-10-23
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of GMP synthetase from Thermus thermophilus
To be Published
2YWC
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CRYSTAL STRUCTURE OF GMP SYNTHETASE FROM THERMUS THERMOPHILUS IN COMPLEX WITH XMP
分子名称:GMP synthase [glutamine-hydrolyzing], XANTHOSINE-5'-MONOPHOSPHATE
著者Baba, S., Kanagawa, M., Kuramitsu, S., Yokoyama, S., Sampei, G., Kawai, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-20
公開日2007-10-23
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of GMP synthetase from Thermus thermophilus
To be Published
1WKS
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SOLUTION STRUCTURE OF AN RNA STEM-LOOP DERIVED FROM THE 3' CONSERVED REGION OF EEL LINE UNAL2
分子名称:5'-R(*GP*GP*CP*UP*UP*UP*GP*GP*AP*UP*AP*AP*AP*AP*GP*CP*C)-3'
著者Baba, S., Kajikawa, M., Okada, N., Kawai, G.
登録日2004-06-04
公開日2004-06-22
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献Solution structure of an RNA stem-loop derived from the 3' conserved region of eel LINE UnaL2
Rna, 10, 2004
3AHU
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CRYSTAL STRUCTURE OF YMAH (HFQ) FROM BACILLUS SUBTILIS IN COMPLEX WITH AN RNA APTAMER.
分子名称:Protein hfq, 5'-R(*AP*GP*AP*GP*AP*G)-3'
著者Baba, S., Someya, T., Kumasaka, T., Kawai, G., Nakamura, K.
登録日2010-04-29
公開日2011-07-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of YmaH (Hfq) from Bacillus subtilis in complex with an RNA aptamer.
To be Published
3HSB
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CRYSTAL STRUCTURE OF YMAH (HFQ) FROM BACILLUS SUBTILIS IN COMPLEX WITH AN RNA APTAMER
分子名称:Protein hfq, RNA (5'-R(*AP*GP*AP*GP*AP*GP*A)-3')
著者Baba, S., Someya, T., Kumasaka, T., Kawai, G., Nakamura, K.
登録日2009-06-10
公開日2010-06-23
最終更新日2012-10-03
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of Hfq from Bacillus subtilis in complex with SELEX-derived RNA aptamer: insight into RNA-binding properties of bacterial Hfq
Nucleic Acids Res., 40, 2012
2YRW
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CRYSTAL STRUCTURE OF GAR SYNTHETASE FROM GEOBACILLUS KAUSTOPHILUS
分子名称:Phosphoribosylglycinamide synthetase, PHOSPHATE ION
著者Baba, S., Kanagawa, M., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-03
公開日2007-10-09
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010
2YRX
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CRYSTAL STRUCTURE OF GAR SYNTHETASE FROM GEOBACILLUS KAUSTOPHILUS
分子名称:Phosphoribosylglycinamide synthetase, PHOSPHATE ION, ADENOSINE MONOPHOSPHATE
著者Baba, S., Kanagawa, M., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-03
公開日2007-10-09
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010
2YS6
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CRYSTAL STRUCTURE OF GAR SYNTHETASE FROM GEOBACILLUS KAUSTOPHILUS
分子名称:Phosphoribosylglycinamide synthetase, GLYCINE, ADENOSINE MONOPHOSPHATE
著者Baba, S., Kanagawa, M., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-03
公開日2007-10-09
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010
2YS7
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CRYSTAL STRUCTURE OF GAR SYNTHETASE FROM GEOBACILLUS KAUSTOPHILUS
分子名称:Phosphoribosylglycinamide synthetase
著者Baba, S., Kanagawa, M., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-03
公開日2007-10-09
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010
2YW2
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CRYSTAL STRUCTURE OF GAR SYNTHETASE FROM AQUIFEX AEOLICUS IN COMPLEX WITH ATP
分子名称:Phosphoribosylamine--glycine ligase, PHOSPHATE ION, ADENOSINE-5'-TRIPHOSPHATE
著者Baba, S., Kanagawa, M., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-19
公開日2007-10-23
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010
2YYA
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CRYSTAL STRUCTURE OF GAR SYNTHETASE FROM AQUIFEX AEOLICUS
分子名称:Phosphoribosylamine--glycine ligase
著者Baba, S., Kanagawa, M., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-27
公開日2007-10-30
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010
5X19
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CO BOUND CYTOCHROME C OXIDASE AT 100 MICRO SEC AFTER PUMP LASER IRRADIATION TO RELEASE CO FROM O2 REDUCTION CENTER
分子名称:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
著者Shimada, A., Kubo, M., Baba, S., Yamashita, K., Hirata, K., Ueno, G., Nomura, T., Kimura, T., Shinzawa-Itoh, K., Baba, J., Hatano, K., Eto, Y., Miyamoto, A., Murakami, H., Kumasaka, T., Owada, S., Tono, K., Yabashi, M., Yamaguchi, Y., Yanagisawa, S., Sakaguchi, M., Ogura, T., Komiya, R., Yan, J., Yamashita, E., Yamamoto, M., Ago, H., Yoshikawa, S., Tsukihara, T.
登録日2017-01-25
公開日2017-08-09
最終更新日2017-12-06
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase.
Sci Adv, 3, 2017
5X1B
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CO BOUND CYTOCHROME C OXIDASE AT 20 NSEC AFTER PUMP LASER IRRADIATION TO RELEASE CO FROM O2 REDUCTION CENTER
分子名称:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
著者Shimada, A., Kubo, M., Baba, S., Yamashita, K., Hirata, K., Ueno, G., Nomura, T., Kimura, T., Shinzawa-Itoh, K., Baba, J., Hatano, K., Eto, Y., Miyamoto, A., Murakami, H., Kumasaka, T., Owada, S., Tono, K., Yabashi, M., Yamaguchi, Y., Yanagisawa, S., Sakaguchi, M., Ogura, T., Komiya, R., Yan, J., Yamashita, E., Yamamoto, M., Ago, H., Yoshikawa, S., Tsukihara, T.
登録日2017-01-25
公開日2017-08-09
最終更新日2017-12-06
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase.
Sci Adv, 3, 2017
5X1F
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CO BOUND CYTOCHROME C OXIDASE WITHOUT PUMP LASER IRRADIATION AT 278K
分子名称:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
著者Shimada, A., Kubo, M., Baba, S., Yamashita, K., Hirata, K., Ueno, G., Nomura, T., Kimura, T., Shinzawa-Itoh, K., Baba, J., Hatano, K., Eto, Y., Miyamoto, A., Murakami, H., Kumasaka, T., Owada, S., Tono, K., Yabashi, M., Yamaguchi, Y., Yanagisawa, S., Sakaguchi, M., Ogura, T., Komiya, R., Yan, J., Yamashita, E., Yamamoto, M., Ago, H., Yoshikawa, S., Tsukihara, T.
登録日2017-01-25
公開日2017-08-09
最終更新日2018-01-24
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase.
Sci Adv, 3, 2017
2OM6
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HYPOTHETICAL PROTEIN (PROBABLE PHOSPHOSERINE PHOSPH (PH0253) FROM PYROCOCCUS HORIKOSHII OT3
分子名称:Probable phosphoserine phosphatase, SULFATE ION, MAGNESIUM ION, ...
著者Jeyakanthan, J., Vaijayanthimala, S., Gayathri, D., Velmurugan, D., Baba, S., Ebihara, A., Shinkai, A., Kuramitsu, S., Shiro, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-01-21
公開日2008-01-29
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Hypothetical Protein (Probable Phosphoserine Phosph (PH0253) from Pyrococcus Horikoshii OT3
To be Published
2YWR
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CRYSTAL STRUCTURE OF GAR TRANSFORMYLASE FROM AQUIFEX AEOLICUS
分子名称:Phosphoribosylglycinamide formyltransferase, MAGNESIUM ION, COBALT (II) ION
著者Kanagawa, M., Baba, S., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-23
公開日2007-10-23
最終更新日2014-01-15
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Structures and reaction mechanisms of the two related enzymes, PurN and PurU.
J.Biochem., 154, 2013
2ZW2
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CRYSTAL STRUCTURE OF FORMYLGLYCINAMIDE RIBONUCLEOTIDE AMIDOTRANSFERASE III FROM SULFOLOBUS TOKODAII (STPURS)
分子名称:Putative uncharacterized protein STS178, GLYCEROL
著者Suzuki, S., Tamura, S., Okada, K., Baba, S., Kumasaka, T., Nakagawa, N., Masui, R., Kuramitsu, S., Sampei, G., Kawai, G.
登録日2008-11-27
公開日2009-11-17
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Crystal Structure of Formylglycinamide Ribonucleotide Amidotransferase III from SULFOLOBUS TOKODAII (STPURS)
To be Published
3AUF
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CRYSTAL STRUCTURE OF GLYCINAMIDE RIBONUCLEOTIDE TRANSFORMYLASE 1 FROM SYMBIOBACTERIUM TOEBII
分子名称:Glycinamide ribonucleotide transformylase 1
著者Kanagawa, M., Baba, S., Nagira, T., Kuramitsu, S., Yokoyama, S., Sampei, G., Kawai, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2011-02-03
公開日2012-03-07
最終更新日2014-01-15
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Structures and reaction mechanisms of the two related enzymes, PurN and PurU.
J.Biochem., 154, 2013
3AV3
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CRYSTAL STRUCTURE OF GLYCINAMIDE RIBONUCLEOTIDE TRANSFORMYLASE 1 FROM GEOBACILLUS KAUSTOPHILUS
分子名称:Phosphoribosylglycinamide formyltransferase, MAGNESIUM ION
著者Kanagawa, M., Baba, S., Nakagawa, N., Ebihara, A., Kuramitsu, S., Yokoyama, S., Sampei, G., Kawai, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2011-02-18
公開日2012-03-07
最終更新日2014-01-15
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structures and reaction mechanisms of the two related enzymes, PurN and PurU.
J.Biochem., 154, 2013
3AW8
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CRYSTAL STRUCTURE OF N5-CARBOXYAMINOIMIDAZOLE RIBONUCLEOTIDE SYNTHETASE FROM THERMUS THERMOPHILUS HB8
分子名称:Phosphoribosylaminoimidazole carboxylase, ATPase subunit, ADENOSINE MONOPHOSPHATE, ...
著者Okada, K., Tsunoda, S., Taka, H., Baba, S., Kanagawa, M., Nakagawa, N., Ebihara, A., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2011-03-15
公開日2012-04-11
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structures of N5-carboxyaminoimidazole ribonucleotide synthetase, PurK, from thermophilic bacteria
To be Published