Author results

2D17
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SOLUTION RNA STRUCTURE OF STEM-BULGE-STEM REGION OF THE HIV-1 DIMERIZATION INITIATION SITE
Descriptor:5'-R(*CP*GP*GP*CP*AP*AP*GP*AP*GP*GP*CP*GP*AP*CP*CP*C)-3', 5'-R(*GP*GP*GP*UP*CP*GP*GP*CP*UP*UP*GP*CP*UP*G)-3'
Authors:Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
Deposit date:2005-08-15
Release date:2005-11-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D18
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SOLUTION RNA STRUCTURE OF LOOP REGION OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE EXTENDED-DUPLEX DIMER
Descriptor:5'-R(*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*GP*GP*C)-3'
Authors:Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
Deposit date:2005-08-15
Release date:2005-11-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D19
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SOLUTION RNA STRUCTURE OF LOOP REGION OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE KISSING-LOOP DIMER
Descriptor:5'-R(*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*GP*GP*C)-3'
Authors:Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
Deposit date:2005-08-15
Release date:2005-11-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D1A
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SOLUTION RNA STRUCTURE MODEL OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE EXTENDED-DUPLEX DIMER
Descriptor:RNA
Authors:Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
Deposit date:2005-08-15
Release date:2005-11-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D1B
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SOLUTION RNA STRUCTURE MODEL OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE KISSING-LOOP DIMER
Descriptor:RNA
Authors:Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
Deposit date:2005-08-15
Release date:2005-11-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2YWB
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CRYSTAL STRUCTURE OF GMP SYNTHETASE FROM THERMUS THERMOPHILUS
Descriptor:GMP synthase [glutamine-hydrolyzing]
Authors:Baba, S., Kanagawa, M., Yanai, H., Ishii, T., Kuramitsu, S., Yokoyama, S., Sampei, G., Kawai, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-20
Release date:2007-10-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of GMP synthetase from Thermus thermophilus
To be Published
2YWC
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CRYSTAL STRUCTURE OF GMP SYNTHETASE FROM THERMUS THERMOPHILUS IN COMPLEX WITH XMP
Descriptor:GMP synthase [glutamine-hydrolyzing], XANTHOSINE-5'-MONOPHOSPHATE
Authors:Baba, S., Kanagawa, M., Kuramitsu, S., Yokoyama, S., Sampei, G., Kawai, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-20
Release date:2007-10-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of GMP synthetase from Thermus thermophilus
To be Published
1WKS
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SOLUTION STRUCTURE OF AN RNA STEM-LOOP DERIVED FROM THE 3' CONSERVED REGION OF EEL LINE UNAL2
Descriptor:5'-R(*GP*GP*CP*UP*UP*UP*GP*GP*AP*UP*AP*AP*AP*AP*GP*CP*C)-3'
Authors:Baba, S., Kajikawa, M., Okada, N., Kawai, G.
Deposit date:2004-06-04
Release date:2004-06-22
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of an RNA stem-loop derived from the 3' conserved region of eel LINE UnaL2
Rna, 10, 2004
3AHU
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CRYSTAL STRUCTURE OF YMAH (HFQ) FROM BACILLUS SUBTILIS IN COMPLEX WITH AN RNA APTAMER.
Descriptor:Protein hfq, 5'-R(*AP*GP*AP*GP*AP*G)-3'
Authors:Baba, S., Someya, T., Kumasaka, T., Kawai, G., Nakamura, K.
Deposit date:2010-04-29
Release date:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of YmaH (Hfq) from Bacillus subtilis in complex with an RNA aptamer.
To be Published
3HSB
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CRYSTAL STRUCTURE OF YMAH (HFQ) FROM BACILLUS SUBTILIS IN COMPLEX WITH AN RNA APTAMER
Descriptor:Protein hfq, RNA (5'-R(*AP*GP*AP*GP*AP*GP*A)-3')
Authors:Baba, S., Someya, T., Kumasaka, T., Kawai, G., Nakamura, K.
Deposit date:2009-06-10
Release date:2010-06-23
Last modified:2012-10-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of Hfq from Bacillus subtilis in complex with SELEX-derived RNA aptamer: insight into RNA-binding properties of bacterial Hfq
Nucleic Acids Res., 40, 2012
2YRW
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CRYSTAL STRUCTURE OF GAR SYNTHETASE FROM GEOBACILLUS KAUSTOPHILUS
Descriptor:Phosphoribosylglycinamide synthetase, PHOSPHATE ION
Authors:Baba, S., Kanagawa, M., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-03
Release date:2007-10-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010
2YRX
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CRYSTAL STRUCTURE OF GAR SYNTHETASE FROM GEOBACILLUS KAUSTOPHILUS
Descriptor:Phosphoribosylglycinamide synthetase, PHOSPHATE ION, ADENOSINE MONOPHOSPHATE
Authors:Baba, S., Kanagawa, M., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-03
Release date:2007-10-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010
2YS6
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CRYSTAL STRUCTURE OF GAR SYNTHETASE FROM GEOBACILLUS KAUSTOPHILUS
Descriptor:Phosphoribosylglycinamide synthetase, GLYCINE, ADENOSINE MONOPHOSPHATE
Authors:Baba, S., Kanagawa, M., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-03
Release date:2007-10-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010
2YS7
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CRYSTAL STRUCTURE OF GAR SYNTHETASE FROM GEOBACILLUS KAUSTOPHILUS
Descriptor:Phosphoribosylglycinamide synthetase
Authors:Baba, S., Kanagawa, M., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-03
Release date:2007-10-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010
2YW2
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CRYSTAL STRUCTURE OF GAR SYNTHETASE FROM AQUIFEX AEOLICUS IN COMPLEX WITH ATP
Descriptor:Phosphoribosylamine--glycine ligase, PHOSPHATE ION, ADENOSINE-5'-TRIPHOSPHATE
Authors:Baba, S., Kanagawa, M., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-19
Release date:2007-10-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010
2YYA
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CRYSTAL STRUCTURE OF GAR SYNTHETASE FROM AQUIFEX AEOLICUS
Descriptor:Phosphoribosylamine--glycine ligase
Authors:Baba, S., Kanagawa, M., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-27
Release date:2007-10-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010
6K52
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HYPERTHERMOPHILIC GH6 CELLOBIOHYDROLASE (HMCEL6A) FROM THE MICROBIAL FLORA OF A JAPANESE HOT SPRING
Descriptor:GH6 cellobiohydrolase, HMCEL6A, CALCIUM ION, ...
Authors:Baba, S., Takeda, M., Okuma, J., Hirose, Y., Nishimura, A., Takata, M., Oda, K., Shibata, D., Kondo, Y., Kumasaka, T.
Deposit date:2019-05-28
Release date:2020-06-03
Method:X-RAY DIFFRACTION (1.680001 Å)
Cite:A hyperthermophilic cellobiohydrolase mined from a hot spring metagenomic data
To Be Published
6K53
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A VARIANT OF METAGENOME-DERIVED GH6 CELLOBIOHYDROLASE, HMCEL6A (P88S/L230F/F414S)
Descriptor:GH6 cellobiohydrolase, HMCEL6A, LITHIUM ION, ...
Authors:Baba, S., Takeda, M., Okuma, J., Hirose, Y., Nishimura, A., Takata, M., Oda, K., Shibata, D., Kondo, Y., Kumasaka, T.
Deposit date:2019-05-28
Release date:2020-06-03
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:A hyperthermophilic GH6 cellobiohydrolase (HmCel6A) from a hot spring metagenomic data
To Be Published
6K54
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HYPERTHERMOPHILIC GH6 CELLOBIOHYDROLASE II (HMCEL6A) IN COMPLEX WITH TRISACCHARIDE
Descriptor:GH6 cellobiohydrolase, HMCEL6A, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
Authors:Baba, S., Takeda, M., Okuma, J., Hirose, Y., Nishimura, A., Takata, M., Oda, K., Shibata, D., Kondo, Y., Kumasaka, T.
Deposit date:2019-05-28
Release date:2020-06-03
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.905 Å)
Cite:Novel hyperthermophilic cellobiohydrolase II isolated from hot spring microbial community
To Be Published
6K55
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INACTIVATED MUTANT (D140A) OF HYPERTHERMOPHILIC GH6 CELLOBIOHYDROLASE II (HMCEL6A) IN COMPLEX WITH HEXASACCHARIDE
Descriptor:Glucanase, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose, MAGNESIUM ION
Authors:Baba, S., Takeda, M., Okuma, J., Hirose, Y., Nishimura, A., Takata, M., Oda, K., Shibata, D., Kondo, Y., Kumasaka, T.
Deposit date:2019-05-28
Release date:2020-06-03
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.883 Å)
Cite:A hyperthermophilic cellobiohydrolase mined from a hot spring metagenomic data
To Be Published
5X19
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CO BOUND CYTOCHROME C OXIDASE AT 100 MICRO SEC AFTER PUMP LASER IRRADIATION TO RELEASE CO FROM O2 REDUCTION CENTER
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shimada, A., Kubo, M., Baba, S., Yamashita, K., Hirata, K., Ueno, G., Nomura, T., Kimura, T., Shinzawa-Itoh, K., Baba, J., Hatano, K., Eto, Y., Miyamoto, A., Murakami, H., Kumasaka, T., Owada, S., Tono, K., Yabashi, M., Yamaguchi, Y., Yanagisawa, S., Sakaguchi, M., Ogura, T., Komiya, R., Yan, J., Yamashita, E., Yamamoto, M., Ago, H., Yoshikawa, S., Tsukihara, T.
Deposit date:2017-01-25
Release date:2017-08-09
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase.
Sci Adv, 3, 2017
5X1B
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CO BOUND CYTOCHROME C OXIDASE AT 20 NSEC AFTER PUMP LASER IRRADIATION TO RELEASE CO FROM O2 REDUCTION CENTER
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shimada, A., Kubo, M., Baba, S., Yamashita, K., Hirata, K., Ueno, G., Nomura, T., Kimura, T., Shinzawa-Itoh, K., Baba, J., Hatano, K., Eto, Y., Miyamoto, A., Murakami, H., Kumasaka, T., Owada, S., Tono, K., Yabashi, M., Yamaguchi, Y., Yanagisawa, S., Sakaguchi, M., Ogura, T., Komiya, R., Yan, J., Yamashita, E., Yamamoto, M., Ago, H., Yoshikawa, S., Tsukihara, T.
Deposit date:2017-01-25
Release date:2017-08-09
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase.
Sci Adv, 3, 2017
5X1F
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CO BOUND CYTOCHROME C OXIDASE WITHOUT PUMP LASER IRRADIATION AT 278K
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shimada, A., Kubo, M., Baba, S., Yamashita, K., Hirata, K., Ueno, G., Nomura, T., Kimura, T., Shinzawa-Itoh, K., Baba, J., Hatano, K., Eto, Y., Miyamoto, A., Murakami, H., Kumasaka, T., Owada, S., Tono, K., Yabashi, M., Yamaguchi, Y., Yanagisawa, S., Sakaguchi, M., Ogura, T., Komiya, R., Yan, J., Yamashita, E., Yamamoto, M., Ago, H., Yoshikawa, S., Tsukihara, T.
Deposit date:2017-01-25
Release date:2017-08-09
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase.
Sci Adv, 3, 2017
2FDT
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SOLUTION STRUCTURE OF A CONSERVED RNA HAIRPIN OF EEL LINE UNAL2
Descriptor:36-mer
Authors:Nomura, Y., Baba, S., Nakazato, S., Sakamoto, T., Kajikawa, M., Okada, N., Kawai, G.
Deposit date:2005-12-14
Release date:2006-12-05
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure and functional importance of a conserved RNA hairpin of eel LINE UnaL2
Nucleic Acids Res., 34, 2006
2IDE
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CRYSTAL STRUCTURE OF THE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN C (TTHA1789) FROM THERMUS THEROMOPHILUS HB8
Descriptor:Molybdenum cofactor biosynthesis protein C, PHOSPHATE ION
Authors:Jeyakanthan, J., Kanaujia, S.P., Vasuki Ranjani, C., Sekar, K., Baba, S., Ebihara, A., Kuramitsu, S., Shinkai, A., Shiro, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-15
Release date:2007-09-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of the molybdenum cofactor biosynthesis protein C (TTHA1789) from Thermus Theromophilus HB8
To be Published
167132
PDB entries from 2020-07-29