Author results

1GEH
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CRYSTAL STRUCTURE OF ARCHAEAL RUBISCO (RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE)
Descriptor:RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE, SULFATE ION
Authors:Kitano, K., Maeda, N., Fukui, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2000-11-13
Release date:2001-12-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of a Novel-Type Archaeal Rubisco with Pentagonal Symmetry
Structure, 9, 2001
3WDK
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CRYSTAL STRUCTURE OF 4-PHOSPHOPANTOATE-BETA-ALANINE LIGASE COMPLEXED WITH REACTION INTERMEDIATE
Descriptor:4-phosphopantoate--beta-alanine ligase, 5'-O-[(S)-hydroxy{[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]oxy}phosphoryl]adenosine, CITRATE ANION
Authors:Kishimoto, A., Kita, A., Ishibashi, T., Tomita, H., Yokooji, Y., Imanaka, T., Atomi, H., Miki, K.
Deposit date:2013-06-19
Release date:2014-04-02
Last modified:2017-02-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of phosphopantothenate synthetase from Thermococcus kodakarensis
Proteins, 82, 2014
3WDL
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CRYSTAL STRUCTURE OF 4-PHOSPHOPANTOATE-BETA-ALANINE LIGASE COMPLEXED WITH ATP
Descriptor:4-phosphopantoate--beta-alanine ligase, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION
Authors:Kishimoto, A., Kita, A., Ishibashi, T., Tomita, H., Yokooji, Y., Imanaka, T., Atomi, H., Miki, K.
Deposit date:2013-06-19
Release date:2014-04-02
Last modified:2017-02-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of phosphopantothenate synthetase from Thermococcus kodakarensis
Proteins, 82, 2014
3WDM
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CRYSTAL STRUCTURE OF 4-PHOSPHOPANTOATE-BETA-ALANINE LIGASE FROM THERMOCOCCUS KODAKARENSIS
Descriptor:4-phosphopantoate--beta-alanine ligase, ADENOSINE
Authors:Kishimoto, A., Kita, A., Ishibashi, T., Tomita, H., Yokooji, Y., Imanaka, T., Atomi, H., Miki, K.
Deposit date:2013-06-19
Release date:2014-04-02
Last modified:2017-02-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of phosphopantothenate synthetase from Thermococcus kodakarensis
Proteins, 82, 2014
2Z1C
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CRYSTAL STRUCTURE OF HYPC FROM THERMOCOCCUS KODAKARAENSIS KOD1
Descriptor:Hydrogenase expression/formation protein HypC, GLYCEROL, TETRAETHYLENE GLYCOL
Authors:Watanabe, S., Matsumi, R., Arai, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
2Z1D
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CRYSTAL STRUCTURE OF [NIFE] HYDROGENASE MATURATION PROTEIN, HYPD FROM THERMOCOCCUS KODAKARAENSIS
Descriptor:Hydrogenase expression/formation protein hypD, IRON/SULFUR CLUSTER
Authors:Watanabe, S., Matsumi, R., Arai, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2014-11-12
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
2Z1E
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CRYSTAL STRUCTURE OF HYPE FROM THERMOCOCCUS KODAKARAENSIS (OUTWARD FORM)
Descriptor:Hydrogenase expression/formation protein HypE
Authors:Watanabe, S., Matsumi, R., Arai, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
2Z1F
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CRYSTAL STRUCTURE OF HYPE FROM THERMOCOCCUS KODAKARAENSIS (INWARD FORM)
Descriptor:Hydrogenase expression/formation protein HypE
Authors:Watanabe, S., Matsumi, R., Arai, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
3A11
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CRYSTAL STRUCTURE OF RIBOSE-1,5-BISPHOSPHATE ISOMERASE FROM THERMOCOCCUS KODAKARAENSIS KOD1
Descriptor:Translation initiation factor eIF-2B, delta subunit, DI(HYDROXYETHYL)ETHER, ...
Authors:Nakamura, A., Fujihashi, M., Nishiba, Y., Yoshida, S., Yano, A., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2009-03-25
Release date:2010-03-31
Last modified:2013-06-12
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Dynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1
J.Biol.Chem., 287, 2012
3A12
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CRYSTAL STRUCTURE OF TYPE III RUBISCO COMPLEXED WITH 2-CABP
Descriptor:Ribulose bisphosphate carboxylase, MAGNESIUM ION, 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
Authors:Nishitani, Y., Fujihashi, M., Doi, T., Yoshida, S., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2009-03-25
Release date:2010-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile
J.Biol.Chem., 285, 2010
3A13
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CRYSTAL STRUCTURE OF TYPE III RUBISCO SP4 MUTANT COMPLEXED WITH 2-CABP AND ACTIVATED WITH CA
Descriptor:Ribulose bisphosphate carboxylase, MAGNESIUM ION, 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, ...
Authors:Nishitani, Y., Fujihashi, M., Doi, T., Yoshida, S., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2009-03-25
Release date:2010-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Sturcture-based optimization of a Type III Rubisco from a hyperthermophile
To be Published
3A44
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CRYSTAL STRUCTURE OF HYPA IN THE DIMERIC FORM
Descriptor:Hydrogenase nickel incorporation protein hypA, ZINC ION
Authors:Watanabe, S., Arai, T., Matsumi, R., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2009-06-30
Release date:2009-10-06
Last modified:2017-02-22
Method:X-RAY DIFFRACTION (3.31 Å)
Cite:Crystal structure of HypA, a nickel-binding metallochaperone for [NiFe] hydrogenase maturation.
J.Mol.Biol., 394, 2009
3A9C
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CRYSTAL STRUCTURE OF RIBOSE-1,5-BISPHOSPHATE ISOMERASE FROM THERMOCOCCUS KODAKARAENSIS KOD1 IN COMPLEX WITH RIBULOSE-1,5-BISPHOSPHATE
Descriptor:Translation initiation factor eIF-2B, delta subunit, RIBULOSE-1,5-DIPHOSPHATE, ...
Authors:Nakamura, A., Fujihashi, M., Nishiba, Y., Yoshida, S., Yano, A., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2009-10-22
Release date:2010-11-03
Last modified:2013-06-12
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Dynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1
J.Biol.Chem., 287, 2012
3KDN
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CRYSTAL STRUCTURE OF TYPE III RUBISCO SP4 MUTANT COMPLEXED WITH 2-CABP
Descriptor:Ribulose bisphosphate carboxylase, MAGNESIUM ION, 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
Authors:Nishitani, Y., Fujihashi, M., Doi, T., Yoshida, S., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2009-10-23
Release date:2010-10-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile
J.Biol.Chem., 285, 2010
3KDO
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CRYSTAL STRUCTURE OF TYPE III RUBISCO SP6 MUTANT COMPLEXED WITH 2-CABP
Descriptor:Ribulose bisphosphate carboxylase, 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION
Authors:Nishitani, Y., Fujihashi, M., Doi, T., Yoshida, S., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2009-10-23
Release date:2010-10-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile
J.Biol.Chem., 285, 2010
3VM6
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CRYSTAL STRUCTURE OF RIBOSE-1,5-BISPHOSPHATE ISOMERASE FROM THERMOCOCCUS KODAKARENSIS KOD1 IN COMPLEX WITH ALPHA-D-RIBOSE-1,5-BISPHOSPHATE
Descriptor:Translation initiation factor eIF-2B, delta subunit, 1,5-di-O-phosphono-alpha-D-ribofuranose, ...
Authors:Nakamura, A., Fujihashi, M., Aono, R., Sato, T., Nishiba, Y., Yoshida, S., Yano, A., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2011-12-08
Release date:2012-04-25
Last modified:2013-06-12
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Dynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1
J.Biol.Chem., 287, 2012
4G9I
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CRYSTAL STRUCTURE OF T.KODAKARENSIS HYPF
Descriptor:Hydrogenase maturation protein HypF, ZINC ION
Authors:Tominaga, T., Watanabe, S., Matsumi, R., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2012-07-24
Release date:2012-10-24
Method:X-RAY DIFFRACTION (4.5 Å)
Cite:Structure of the [NiFe]-hydrogenase maturation protein HypF from Thermococcus kodakarensis KOD1.
Acta Crystallogr.,Sect.F, 68, 2012
4GA4
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CRYSTAL STRUCTURE OF AMP PHOSPHORYLASE N-TERMINAL DELETION MUTANT
Descriptor:Putative thymidine phosphorylase, PHOSPHATE ION
Authors:Nishitani, Y., Aono, R., Nakamura, A., Sato, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2012-07-25
Release date:2013-05-15
Last modified:2014-03-12
Method:X-RAY DIFFRACTION (3.51 Å)
Cite:Structure analysis of archaeal AMP phosphorylase reveals two unique modes of dimerization
J.Mol.Biol., 425, 2013
4GA5
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CRYSTAL STRUCTURE OF AMP PHOSPHORYLASE C-TERMINAL DELETION MUTANT IN THE APO-FORM
Descriptor:Putative thymidine phosphorylase
Authors:Nishitani, Y., Aono, R., Nakamura, A., Sato, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2012-07-25
Release date:2013-05-15
Last modified:2014-03-12
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Structure analysis of archaeal AMP phosphorylase reveals two unique modes of dimerization
J.Mol.Biol., 425, 2013
4GA6
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CRYSTAL STRUCTURE OF AMP PHOSPHORYLASE C-TERMINAL DELETION MUTANT IN COMPLEX WITH SUBSTRATES
Descriptor:Putative thymidine phosphorylase, ADENOSINE MONOPHOSPHATE, SULFATE ION
Authors:Nishitani, Y., Aono, R., Nakamura, A., Sato, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2012-07-25
Release date:2013-05-15
Last modified:2014-03-12
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structure analysis of archaeal AMP phosphorylase reveals two unique modes of dimerization
J.Mol.Biol., 425, 2013
2YH2
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PYROBACULUM CALIDIFONTIS ESTERASE MONOCLINIC FORM
Descriptor:ESTERASE, SULFATE ION
Authors:Palm, G.J., Bogdanovic, X., Hinrichs, W.
Deposit date:2011-04-27
Release date:2011-05-18
Last modified:2015-03-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The Crystal Structure of an Esterase Fom the Hyperthermophilic Microorganism Pyrobaculum Calidifontis Va1 Supports Explanation of its Enantioselectivity.
Appl.Microbiol.Biotechnol., 91, 2011
3ZWQ
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HYPERTHERMOPHILIC ESTERASE FROM THE ARCHEON PYROBACULUM CALIDIFONTIS
Descriptor:ALPHA/BETA HYDROLASE FOLD-3 DOMAIN PROTEIN
Authors:Palm, G.J., Bogdanovic, X., Hinrichs, W.
Deposit date:2011-08-02
Release date:2011-08-17
Last modified:2015-03-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Crystal Structure of an Esterase from the Hyperthermophilic Microorganism Pyrobaculum Calidifontis Va1 Supports Explanation of its Enantioselectivity.
Appl.Microbiol.Biotechnol., 91, 2011
3A43
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CRYSTAL STRUCTURE OF HYPA
Descriptor:Hydrogenase nickel incorporation protein hypA, ZINC ION
Authors:Watanabe, S., Arai, T., Matsumi, R., Aromi, H., Imanaka, T., Miki, K.
Deposit date:2009-06-30
Release date:2009-10-06
Last modified:2016-12-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of HypA, a nickel-binding metallochaperone for [NiFe] hydrogenase maturation.
J.Mol.Biol., 394, 2009
3W4S
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MYO-INOSITOL KINASE FROM THERMOCOCCUS KODAKARENSIS
Descriptor:Carbohydrate/pyrimidine kinase, PfkB family, IODIDE ION
Authors:Fujihashi, M., Miyamoto, Y., Miki, K.
Deposit date:2013-01-10
Release date:2017-02-22
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:An uncharacterized member of the ribokinase family in Thermococcus kodakarensis exhibits myo-inositol kinase activity.
J.Biol.Chem., 288, 2013
5AYV
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CRYSTAL STRUCTURE OF ARCHAEAL KETOPANTOATE REDUCTASE COMPLEXED WITH COENZYME A AND 2-OXOPANTOATE
Descriptor:2-dehydropantoate 2-reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ACETATE ION, ...
Authors:Aikawa, Y., Nishitani, Y., Miki, K.
Deposit date:2015-09-08
Release date:2016-01-27
Last modified:2016-03-02
Method:X-RAY DIFFRACTION (1.647 Å)
Cite:Crystal structure of archaeal ketopantoate reductase complexed with coenzyme a and 2-oxopantoate provides structural insights into feedback regulation
Proteins, 84, 2016
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