Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6FJ1
DownloadVisualize
BU of 6fj1 by Molmil
Structure of the Ldtfm-avibactam carbamoyl enzyme
Descriptor: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, 3,6,9,12,15-PENTAOXAHEPTADECANE, CHLORIDE ION, ...
Authors:Li de la Sierra Gallay, I, Iannazzo, L, Compain, F, Fonvielle, M, van Tilbeurgh, H, Edoo, Z, Arthur, M, Etheve-Quelquejeu, M, Hugonnet, J.
Deposit date:2018-01-19
Release date:2019-01-30
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Synthesis of Avibactam Derivatives and Activity on beta-Lactamases and Peptidoglycan Biosynthesis Enzymes of Mycobacteria.
Chemistry, 24, 2018
4II9
DownloadVisualize
BU of 4ii9 by Molmil
Crystal structure of Weissella viridescens FemXVv non-ribosomal amino acid transferase in complex with a peptidyl-RNA conjugate
Descriptor: 5-mer peptide, FemX, GLYCEROL, ...
Authors:Li de la Sierra-Gallay, I, Fonvielle, M, van Tilbeurgh, H, Arthur, M, Etheve-Quelquejeu, M.
Deposit date:2012-12-20
Release date:2013-07-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:The Structure of FemXWv in Complex with a Peptidyl-RNA Conjugate: Mechanism of Aminoacyl Transfer from Ala-tRNA(Ala) to Peptidoglycan Precursors
Angew.Chem.Int.Ed.Engl., 52, 2013
2MTZ
DownloadVisualize
BU of 2mtz by Molmil
Haddock model of Bacillus subtilis L,D-transpeptidase in complex with a peptidoglycan hexamuropeptide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid, Putative L,D-transpeptidase YkuD, intact bacterial peptidoglycan
Authors:Schanda, P, Triboulet, S, Laguri, C, Bougault, C, Ayala, I, Callon, M, Arthur, M, Simorre, J.
Deposit date:2014-09-02
Release date:2015-01-14
Last modified:2023-11-15
Method:SOLID-STATE NMR
Cite:Atomic model of a cell-wall cross-linking enzyme in complex with an intact bacterial peptidoglycan.
J.Am.Chem.Soc., 136, 2014
4YFM
DownloadVisualize
BU of 4yfm by Molmil
Class A beta-lactamase from Mycobacterium abscessus
Descriptor: ACETATE ION, Beta-lactamase, GLYCEROL
Authors:Soroka, D, Li de la Sierra-Gallay, I, Dubee, V, van Tilbeurgh, H, Arthur, M.
Deposit date:2015-02-25
Release date:2015-07-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Hydrolysis of Clavulanate by Mycobacterium tuberculosis beta-Lactamase BlaC Harboring a Canonical SDN Motif.
Antimicrob.Agents Chemother., 59, 2015
1ZAT
DownloadVisualize
BU of 1zat by Molmil
Crystal Structure of an Enterococcus faecium peptidoglycan binding protein at 2.4 A resolution
Descriptor: L,D-transpeptidase, SULFATE ION, ZINC ION
Authors:Biarrotte-Sorin, S, Hugonnet, J.-E, Mainardi, J.-L, Gutmann, L, Rice, L, Arthur, M, Mayer, C.
Deposit date:2005-04-07
Release date:2006-03-28
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of a Novel beta-Lactam-insensitive Peptidoglycan Transpeptidase.
J.Mol.Biol., 359, 2006
3GKR
DownloadVisualize
BU of 3gkr by Molmil
Crystal Structure of Weissella viridescens FemX:UDP-MurNAc-hexapeptide complex
Descriptor: ALANINE, FemX, GLYCEROL, ...
Authors:Delfosse, V, Piton, J, Villet, R, Lecerf, M, Arthur, M, Mayer, C.
Deposit date:2009-03-11
Release date:2010-03-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of Weissella viridescens FemX with the UDP-MurNAc-hexapeptide product of the alanine transfer reaction
To be Published
1XE4
DownloadVisualize
BU of 1xe4 by Molmil
Crystal Structure of Weissella viridescens FemX (K36M) Mutant
Descriptor: FemX, MAGNESIUM ION
Authors:Biarrotte-Sorin, S, Maillard, A.P, Arthur, M, Mayer, C.
Deposit date:2004-09-09
Release date:2005-05-31
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure-Based Site-Directed Mutagenesis of the UDP-MurNAc-Pentapeptide-Binding Cavity of the FemX Alanyl Transferase from Weissella viridescens
J.Bacteriol., 187, 2005
1XF8
DownloadVisualize
BU of 1xf8 by Molmil
Crystal Structure of Weissella viridescens FemX (Y254F) Mutant
Descriptor: FemX, MAGNESIUM ION
Authors:Biarrotte-Sorin, S, Maillard, A.P, Arthur, M, Mayer, C.
Deposit date:2004-09-14
Release date:2005-05-31
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure-Based Site-Directed Mutagenesis of the UDP-MurNAc-Pentapeptide-Binding Cavity of the FemX Alanyl Transferase from Weissella viridescens
J.BACTERIOL., 187, 2005
1XIX
DownloadVisualize
BU of 1xix by Molmil
Crystal Structure of Weissella viridescens FemX Form II
Descriptor: FemX
Authors:Biarrotte-Sorin, S, Maillard, A.P, Arthur, M, Mayer, C.
Deposit date:2004-09-22
Release date:2005-05-31
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure-Based Site-Directed Mutagenesis of the UDP-MurNAc-Pentapeptide-Binding Cavity of the FemX Alanyl Transferase from Weissella viridescens
J.Bacteriol., 187, 2005
1NE9
DownloadVisualize
BU of 1ne9 by Molmil
Crystal Structure of Weissella viridescens FemX at 1.7 Ang Resolution
Descriptor: FemX, MAGNESIUM ION
Authors:Biarrotte-Sorin, S, Maillard, A.P, Delettre, J, Sougakoff, W, Arthur, M, Mayer, C.
Deposit date:2002-12-11
Release date:2004-02-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of Weissella viridescens FemX and its complex with UDP-MurNAc-pentapeptide: insights into FemABX family substrates recognition.
Structure, 12, 2004
1P4N
DownloadVisualize
BU of 1p4n by Molmil
Crystal Structure of Weissella viridescens FemX:UDP-MurNAc-pentapeptide complex
Descriptor: FemX, GLYCEROL, MAGNESIUM ION, ...
Authors:Biarrotte-Sorin, S, Maillard, A, Delettre, J, Sougakoff, W, Arthur, M, Mayer, C.
Deposit date:2003-04-23
Release date:2004-02-10
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of Weissella viridescens FemX and its complex with UDP-MurNAc-pentapeptide: insights into FemABX family substrates recognition.
Structure, 12, 2004
3ZG4
DownloadVisualize
BU of 3zg4 by Molmil
NMR structure of the catalytic domain from E. faecium L,D- transpeptidase
Descriptor: ERFK/YBIS/YCFS/YNHG
Authors:Lecoq, L, Dubee, V, Triboulet, S, Bougault, C, Hugonnet, J.E, Arthur, M, Simorre, J.P.
Deposit date:2012-12-14
Release date:2013-04-24
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The Structure of Enterococcus Faecium L,D---Transpeptidase Acylated by Ertapenem Provides Insight Into the Inactivation Mechanism.
Acs Chem.Biol., 8, 2013
3ZGP
DownloadVisualize
BU of 3zgp by Molmil
NMR structure of the catalytic domain from E. faecium L,D- transpeptidase acylated by ertapenem
Descriptor: (4R,5S)-3-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid, ERFK/YBIS/YCFS/YNHG
Authors:Lecoq, L, Triboulet, S, Dubee, V, Bougault, C, Hugonnet, J.E, Arthur, M, Simorre, J.P.
Deposit date:2012-12-18
Release date:2013-04-24
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The Structure of Enterococcus Faecium L,D---Transpeptidase Acylated by Ertapenem Provides Insight Into the Inactivation Mechanism.
Acs Chem.Biol., 8, 2013
3ZQD
DownloadVisualize
BU of 3zqd by Molmil
B. subtilis L,D-transpeptidase
Descriptor: L, D-TRANSPEPTIDASE YKUD
Authors:Lecoq, L, Simorre, J.-P, Bougault, C, Arthur, M, Hugonnet, J.-E, Veckerle, C, Pessey, O.
Deposit date:2011-06-09
Release date:2012-05-23
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Dynamics Induced by Beta-Lactam Antibiotics in the Active Site of Bacillus subtilis L,D-Transpeptidase.
Structure, 20, 2012
4A52
DownloadVisualize
BU of 4a52 by Molmil
NMR structure of the imipenem-acylated L,D-transpeptidase from Bacillus subtilis
Descriptor: (5R)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-[(2-{[(E)-iminomethyl]amino}ethyl)sulfanyl]-4,5-dihydro-1H-pyrrole-2-carboxylic acid, PUTATIVE L, D-TRANSPEPTIDASE YKUD
Authors:Lecoq, L, Simorre, J, Bougault, C, Arthur, M, Hugonnet, J, Veckerle, C, Pessey, O.
Deposit date:2011-10-24
Release date:2012-05-30
Last modified:2018-01-24
Method:SOLUTION NMR
Cite:Dynamics Induced by Beta-Lactam Antibiotics in the Active Site of Bacillus subtilis L,D-Transpeptidase.
Structure, 20, 2012
2HKL
DownloadVisualize
BU of 2hkl by Molmil
Crystal structure of Enterococcus faecium L,D-transpeptidase C442S mutant
Descriptor: L,D-TRANSPEPTIDASE, SULFATE ION
Authors:Delfosse, V, Hugonnet, J.-E, Magnet, S, Mainardi, J.-L, Arthur, M, Mayer, C.
Deposit date:2006-07-05
Release date:2007-05-22
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of Enterococcus faecium L,D-transpeptidase C442S mutant
To be Published
6NTZ
DownloadVisualize
BU of 6ntz by Molmil
Crystal structure of E. coli PBP5-meropenem
Descriptor: (2S,3R,4S)-4-{[(3S,5R)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid, D-alanyl-D-alanine carboxypeptidase
Authors:Caveney, N.A, Strynadka, N.C.J, Caballero, G, Worrall, L.J.
Deposit date:2019-01-30
Release date:2019-03-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural insight into YcbB-mediated beta-lactam resistance in Escherichia coli.
Nat Commun, 10, 2019
6NTW
DownloadVisualize
BU of 6ntw by Molmil
Crystal structure of E. coli YcbB
Descriptor: (2S,3R,4S)-4-{[(3S,5R)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid, Probable L,D-transpeptidase YcbB, SULFATE ION
Authors:Caveney, N.A, Strynadka, N.C.J, Caballero, G, Worrall, L.J.
Deposit date:2019-01-30
Release date:2019-03-20
Last modified:2020-01-08
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Structural insight into YcbB-mediated beta-lactam resistance in Escherichia coli.
Nat Commun, 10, 2019
4G75
DownloadVisualize
BU of 4g75 by Molmil
Structure of PaeM, a colicin M-like bacteriocin produced by Pseudomonas aeruginosa
Descriptor: 1,2-ETHANEDIOL, MAGNESIUM ION, phosphodiesterase
Authors:Touze, T, Graille, M, Mengin-Lecreulx, D.
Deposit date:2012-07-20
Release date:2012-09-12
Last modified:2012-11-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Functional and Structural Characterization of PaeM, a Colicin M-like Bacteriocin Produced by Pseudomonas aeruginosa.
J.Biol.Chem., 287, 2012
4G76
DownloadVisualize
BU of 4g76 by Molmil
Structure of PaeM, a colicin M-like bacteriocin produced by Pseudomonas aeruginosa
Descriptor: Phosphodiesterase
Authors:Touze, T, Graille, M, Mengin-Lecreulx, D.
Deposit date:2012-07-20
Release date:2012-09-12
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.385 Å)
Cite:Functional and Structural Characterization of PaeM, a Colicin M-like Bacteriocin Produced by Pseudomonas aeruginosa.
J.Biol.Chem., 287, 2012
6DZ8
DownloadVisualize
BU of 6dz8 by Molmil
Crystal structure of S. aureus penicillin binding protein 4 (PBP4) mutant (S75C)
Descriptor: Penicillin-binding protein 4, ZINC ION
Authors:Alexander, J.A.N, Strynadka, N.C.J.
Deposit date:2018-07-03
Release date:2018-12-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Recognition of Peptidoglycan Fragments by the Transpeptidase PBP4 FromStaphylococcus aureus.
Front Microbiol, 9, 2018
8F3R
DownloadVisualize
BU of 8f3r by Molmil
Crystal structure of Penicillin Binding Protein 5 (PBP5) T485M T499I variant apo form from Enterococcus faecium
Descriptor: Penicillin binding protein 5, SULFATE ION
Authors:D'Andrea, E.D, Choy, M.S, Schoenle, M.V, Page, R, Peti, W.
Deposit date:2022-11-10
Release date:2023-07-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:The Molecular Basis for Resistance of E. faecium PBP5 to beta-lactam Antibiotics
Nat Commun, 2023
8F3G
DownloadVisualize
BU of 8f3g by Molmil
Crystal structure of Penicillin Binding Protein 5 (PBP5) T485M variant in the penicillin bound form from Enterococcus faecium
Descriptor: OPEN FORM - PENICILLIN G, Penicillin binding protein 5, SULFATE ION
Authors:D'Andrea, E.D, Choy, M.S, Schoenle, M.V, Page, R, Peti, W.
Deposit date:2022-11-10
Release date:2023-07-05
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.59 Å)
Cite:The Molecular Basis for Resistance of E. faecium PBP5 to beta-lactam Antibiotics
Nat Commun, 2023
8F3F
DownloadVisualize
BU of 8f3f by Molmil
Crystal structure of Penicillin Binding Protein 5 (PBP5) T485M variant apo form from Enterococcus faecium
Descriptor: Penicillin binding protein 5, SULFATE ION
Authors:D'Andrea, E.D, Choy, M.S, Hunashal, Y, Schoenle, M.V, Page, R, Peti, W.
Deposit date:2022-11-10
Release date:2023-07-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:The Molecular Basis for Resistance of E. faecium PBP5 to beta-lactam Antibiotics
Nat Commun, 2023
8F3N
DownloadVisualize
BU of 8f3n by Molmil
Crystal structure of Penicillin Binding Protein 5 (PBP5) T485A variant with S466 insertion penicillin bound form from Enterococcus faecium
Descriptor: OPEN FORM - PENICILLIN G, Penicillin binding protein 5, SULFATE ION
Authors:D'Andrea, E.D, Choy, M.S, Schoenle, M.V, Page, R, Peti, W.
Deposit date:2022-11-10
Release date:2023-07-05
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:The Molecular Basis for Resistance of E. faecium PBP5 to beta-lactam Antibiotics
Nat Commun, 2023

 

12>

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon