Author results

1HJR
  • Download 1hjr
  • View 1hjr
Molmil generated image of 1hjr
ATOMIC STRUCTURE OF THE RUVC RESOLVASE: A HOLLIDAY JUNCTION-SPECIFIC ENDONUCLEASE FROM E. COLI
Descriptor:HOLLIDAY JUNCTION RESOLVASE (RUVC)
Authors:Ariyoshi, M., Vassylyev, D.G., Morikawa, K.
Deposit date:1994-12-02
Release date:1995-02-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Atomic structure of the RuvC resolvase: a holliday junction-specific endonuclease from E. coli.
Cell(Cambridge,Mass.), 78, 1994
1C7Y
  • Download 1c7y
  • View 1c7y
Molmil generated image of 1c7y
E.COLI RUVA-HOLLIDAY JUNCTION COMPLEX
Descriptor:DNA (5'-D(P*DAP*DAP*DGP*DTP*DTP*DGP*DGP*DGP*DAP*DTP*DTP*DGP*DT)-3'), DNA (5'-D(P*DCP*DTP*DGP*DTP*DGP*DTP*DGP*DTP*DAP*DAP*DGP*DC)-3'), DNA (5'-D(P*DGP*DCP*DTP*DTP*DAP*DCP*DAP*DCP*DAP*DCP*DAP*DGP*DA)-3'), ...
Authors:Ariyoshi, M., Nishino, T., Iwasaki, H., Shinagawa, H., Morikawa, K.
Deposit date:2000-04-03
Release date:2000-07-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structure of the holliday junction DNA in complex with a single RuvA tetramer.
Proc.Natl.Acad.Sci.USA, 97, 2000
1VAS
  • Download 1vas
  • View 1vas
Molmil generated image of 1vas
ATOMIC MODEL OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME COMPLEXED WITH A DNA SUBSTRATE: STRUCTURAL BASIS FOR DAMAGED DNA RECOGNITION
Descriptor:DNA (5'-D(*AP*TP*CP*GP*CP*GP*TP*TP*GP*CP*GP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*CP*GP*CP*AP*AP*CP*GP*CP*GP*A)-3'), PROTEIN (T4 ENDONUCLEASE V (E.C.3.1.25.1))
Authors:Vassylyev, D.G., Kashiwagi, T., Mikami, Y., Ariyoshi, M., Iwai, S., Ohtsuka, E., Morikawa, K.
Deposit date:1995-09-08
Release date:1996-01-31
Last modified:2013-05-01
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Atomic model of a pyrimidine dimer excision repair enzyme complexed with a DNA substrate: structural basis for damaged DNA recognition.
Cell(Cambridge,Mass.), 83, 1995
1ENI
  • Download 1eni
  • View 1eni
Molmil generated image of 1eni
CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE MUTANTS
Descriptor:ENDONUCLEASE V
Authors:Vassylyev, D.G., Ariyoshi, M., Matsumoto, O., Katayanagi, K., Ohtsuka, E., Morikawa, K.
Deposit date:1994-08-08
Release date:1994-10-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a pyrimidine dimer-specific excision repair enzyme from bacteriophage T4: refinement at 1.45 A and X-ray analysis of the three active site mutants.
J.Mol.Biol., 249, 1995
1ENJ
  • Download 1enj
  • View 1enj
Molmil generated image of 1enj
CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE MUTANTS
Descriptor:ENDONUCLEASE V
Authors:Vassylyev, D.G., Ariyoshi, M., Matsumoto, O., Katayanagi, K., Ohtsuka, E., Morikawa, K.
Deposit date:1994-08-08
Release date:1994-10-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of a pyrimidine dimer-specific excision repair enzyme from bacteriophage T4: refinement at 1.45 A and X-ray analysis of the three active site mutants.
J.Mol.Biol., 249, 1995
1ENK
  • Download 1enk
  • View 1enk
Molmil generated image of 1enk
CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE MUTANTS
Descriptor:ENDONUCLEASE V
Authors:Vassylyev, D.G., Ariyoshi, M., Matsumoto, O., Katayanagi, K., Ohtsuka, E., Morikawa, K.
Deposit date:1994-08-08
Release date:1994-10-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a pyrimidine dimer-specific excision repair enzyme from bacteriophage T4: refinement at 1.45 A and X-ray analysis of the three active site mutants.
J.Mol.Biol., 249, 1995
2END
  • Download 2end
  • View 2end
Molmil generated image of 2end
CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE MUTANTS
Descriptor:ENDONUCLEASE V
Authors:Vassylyev, D.G., Ariyoshi, M., Matsumoto, O., Katayanagi, K., Ohtsuka, E., Morikawa, K.
Deposit date:1994-08-08
Release date:1994-10-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of a pyrimidine dimer-specific excision repair enzyme from bacteriophage T4: refinement at 1.45 A and X-ray analysis of the three active site mutants.
J.Mol.Biol., 249, 1995
1ISF
  • Download 1isf
  • View 1isf
Molmil generated image of 1isf
CRYSTAL STRUCTURE ANALYSIS OF BST-1/CD157
Descriptor:bone marrow stromal cell antigen 1, N-ACETYL-D-GLUCOSAMINE, GLYCEROL
Authors:Yamamoto-Katayama, S., Ariyoshi, M., Ishihara, K., Hirano, T., Jingami, H., Morikawa, K.
Deposit date:2001-12-05
Release date:2002-03-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystallographic studies on human BST-1/CD157 with ADP-ribosyl cyclase and NAD glycohydrolase activities.
J.Mol.Biol., 316, 2002
1ISG
  • Download 1isg
  • View 1isg
Molmil generated image of 1isg
CRYSTAL STRUCTURE ANALYSIS OF BST-1/CD157 WITH ATPGAMMAS
Descriptor:bone marrow stromal cell antigen 1, N-ACETYL-D-GLUCOSAMINE, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
Authors:Yamamoto-Katayama, S., Ariyoshi, M., Ishihara, K., Hirano, T., Jingami, H., Morikawa, K.
Deposit date:2001-12-05
Release date:2002-03-13
Last modified:2012-02-15
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystallographic studies on human BST-1/CD157 with ADP-ribosyl cyclase and NAD glycohydrolase activities.
J.Mol.Biol., 316, 2002
1ISH
  • Download 1ish
  • View 1ish
Molmil generated image of 1ish
CRYSTAL STRUCTURE ANALYSIS OF BST-1/CD157 COMPLEXED WITH ETHENONADP
Descriptor:bone marrow stromal cell antigen 1, N-ACETYL-D-GLUCOSAMINE, ETHENO-NADP
Authors:Yamamoto-Katayama, S., Ariyoshi, M., Ishihara, K., Hirano, T., Jingami, H., Morikawa, K.
Deposit date:2001-12-05
Release date:2002-03-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystallographic studies on human BST-1/CD157 with ADP-ribosyl cyclase and NAD glycohydrolase activities.
J.Mol.Biol., 316, 2002
1ISI
  • Download 1isi
  • View 1isi
Molmil generated image of 1isi
CRYSTAL STRUCTURE ANALYSIS OF BST-1/CD157 COMPLEXED WITH ETHENONAD
Descriptor:bone marrow stromal cell antigen 1, N-ACETYL-D-GLUCOSAMINE, NICOTINAMIDE, ...
Authors:Yamamoto-Katayama, S., Ariyoshi, M., Ishihara, K., Hirano, T., Jingami, H., Morikawa, K.
Deposit date:2001-12-05
Release date:2002-03-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystallographic studies on human BST-1/CD157 with ADP-ribosyl cyclase and NAD glycohydrolase activities.
J.Mol.Biol., 316, 2002
1ISJ
  • Download 1isj
  • View 1isj
Molmil generated image of 1isj
CRYSTAL STRUCTURE ANALYSIS OF BST-1/CD157 COMPLEXED WITH NMN
Descriptor:bone marrow stromal cell antigen 1, N-ACETYL-D-GLUCOSAMINE, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE
Authors:Yamamoto-Katayama, S., Ariyoshi, M., Ishihara, K., Hirano, T., Jingami, H., Morikawa, K.
Deposit date:2001-12-05
Release date:2002-03-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystallographic studies on human BST-1/CD157 with ADP-ribosyl cyclase and NAD glycohydrolase activities.
J.Mol.Biol., 316, 2002
1ISM
  • Download 1ism
  • View 1ism
Molmil generated image of 1ism
CRYSTAL STRUCTURE ANALYSIS OF BST-1/CD157 COMPLEXED WITH NICOTINAMIDE
Descriptor:bone marrow stromal cell antigen 1, N-ACETYL-D-GLUCOSAMINE, NICOTINAMIDE
Authors:Yamamoto-Katayama, S., Ariyoshi, M., Ishihara, K., Hirano, T., Jingami, H., Morikawa, K.
Deposit date:2001-12-05
Release date:2002-03-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystallographic studies on human BST-1/CD157 with ADP-ribosyl cyclase and NAD glycohydrolase activities.
J.Mol.Biol., 316, 2002
1D8L
  • Download 1d8l
  • View 1d8l
Molmil generated image of 1d8l
E. COLI HOLLIDAY JUNCTION BINDING PROTEIN RUVA NH2 REGION LACKING DOMAIN III
Descriptor:PROTEIN (HOLLIDAY JUNCTION DNA HELICASE RUVA)
Authors:Nishino, T., Iwasaki, H., Kataoka, M., Ariyoshi, M., Fujita, T., Shinagawa, H., Morikawa, K.
Deposit date:1999-10-25
Release date:2000-05-03
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Modulation of RuvB function by the mobile domain III of the Holliday junction recognition protein RuvA.
J.Mol.Biol., 298, 2000
1VSR
  • Download 1vsr
  • View 1vsr
Molmil generated image of 1vsr
VERY SHORT PATCH REPAIR (VSR) ENDONUCLEASE FROM ESCHERICHIA COLI
Descriptor:PROTEIN (VSR ENDONUCLEASE), ZINC ION
Authors:Tsutakawa, S.E., Muto, T., Jingami, H., Kunishima, N., Ariyoshi, M., Kohda, D., Nakagawa, M., Morikawa, K.
Deposit date:1999-02-13
Release date:1999-10-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystallographic and functional studies of very short patch repair endonuclease.
Mol.Cell, 3, 1999
2RPQ
  • Download 2rpq
  • View 2rpq
Molmil generated image of 2rpq
SOLUTION STRUCTURE OF A SUMO-INTERACTING MOTIF OF MBD1-CONTAINING CHROMATIN-ASSOCIATED FACTOR 1 BOUND TO SUMO-3
Descriptor:Small ubiquitin-related modifier 2, Activating transcription factor 7-interacting protein 1
Authors:Sekiyama, N., Ikegami, T., Yamane, T., Ikeguchi, M., Uchimura, Y., Baba, D., Ariyoshi, M., Tochio, H., Saitoh, H., Shirakawa, M.
Deposit date:2008-07-07
Release date:2008-10-07
Last modified:2015-12-09
Method:SOLUTION NMR
Cite:Structure of the small ubiquitin-like modifier (SUMO)-interacting motif of MBD1-containing chromatin-associated factor 1 bound to SUMO-3
J.Biol.Chem., 283, 2008
2RR9
  • Download 2rr9
  • View 2rr9
Molmil generated image of 2rr9
THE SOLUTION STRUCTURE OF THE K63-UB2:TUIMS COMPLEX
Descriptor:ubiquitin, Putative uncharacterized protein UIMC1
Authors:Sekiyama, N., Jee, J., Isogai, S., Akagi, K., Huang, T., Ariyoshi, M., Tochio, H., Shirakawa, M.
Deposit date:2010-06-16
Release date:2011-07-06
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The solution structure of the K63-Ub2:tUIMs complex
To be Published
2ZKD
  • Download 2zkd
  • View 2zkd
Molmil generated image of 2zkd
CRYSTAL STRUCTURE OF THE SRA DOMAIN OF MOUSE NP95 IN COMPLEX WITH HEMI-METHYLATED CPG DNA
Descriptor:DNA (5'-D(*DCP*DTP*DAP*DCP*DCP*DGP*DGP*DAP*DTP*DTP*DGP*DC)-3'), DNA (5'-D(*DGP*DCP*DAP*DAP*DTP*DCP*(5CM)P*DGP*DGP*DTP*DAP*DG)-3'), E3 ubiquitin-protein ligase UHRF1, ...
Authors:Arita, K., Ariyoshi, M., Tochio, H., Nakamura, Y., Shirakawa, M.
Deposit date:2008-03-19
Release date:2008-09-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Recognition of hemi-methylated DNA by the SRA protein UHRF1 by a base-flipping mechanism
Nature, 455, 2008
2ZKE
  • Download 2zke
  • View 2zke
Molmil generated image of 2zke
CRYSTAL STRUCTURE OF THE SRA DOMAIN OF MOUSE NP95 IN COMPLEX WITH HEMI-METHYLATED CPG DNA
Descriptor:E3 ubiquitin-protein ligase UHRF1, DNA (5'-D(*DCP*DTP*DAP*DCP*DCP*DGP*DGP*DAP*DTP*DTP*DGP*DC)-3'), DNA (5'-D(*DGP*DCP*DAP*DAP*DTP*DCP*(5CM)P*DGP*DGP*DTP*DAP*DG)-3')
Authors:Arita, K., Ariyoshi, M., Tochio, H., Nakamura, Y., Shirakawa, M.
Deposit date:2008-03-19
Release date:2008-09-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Recognition of hemi-methylated DNA by the SRA protein UHRF1 by a base-flipping mechanism
Nature, 455, 2008
2ZKF
  • Download 2zkf
  • View 2zkf
Molmil generated image of 2zkf
CRYSTAL STRUCTURE OF THE SRA DOMAIN OF MOUSE NP95 IN COMPLEX WITH HEMI-METHYLATED CPG DNA
Descriptor:E3 ubiquitin-protein ligase UHRF1, DNA (5'-D(P*DCP*DAP*DCP*DCP*DGP*DGP*DAP*DTP*DAP*DGP*DA)-3'), DNA (5'-D(*DCP*DTP*DAP*DTP*DCP*(5CM)P*DGP*DGP*DTP*DGP*DA)-3')
Authors:Arita, K., Ariyoshi, M., Tochio, H., Nakamura, Y., Shirakawa, M.
Deposit date:2008-03-19
Release date:2008-09-09
Last modified:2017-01-11
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Recognition of hemi-methylated DNA by the SRA protein UHRF1 by a base-flipping mechanism
Nature, 455, 2008
2ZKG
  • Download 2zkg
  • View 2zkg
Molmil generated image of 2zkg
CRYSTAL STRUCTURE OF UNLIGANDED SRA DOMAIN OF MOUSE NP95
Descriptor:E3 ubiquitin-protein ligase UHRF1, 1,2-ETHANEDIOL
Authors:Arita, K., Ariyoshi, M., Tochio, H., Nakamura, Y., Shirakawa, M.
Deposit date:2008-03-19
Release date:2008-09-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Recognition of hemi-methylated DNA by the SRA protein UHRF1 by a base-flipping mechanism
Nature, 455, 2008
3A1A
  • Download 3a1a
  • View 3a1a
Molmil generated image of 3a1a
CRYSTAL STRUCTURE OF THE DNMT3A ADD DOMAIN
Descriptor:DNA (cytosine-5)-methyltransferase 3A, ZINC ION, 1,2-ETHANEDIOL
Authors:Otani, J., Arita, K., Ariyoshi, M., Shirakawa, M.
Deposit date:2009-03-28
Release date:2009-11-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for recognition of H3K4 methylation status by the DNA methyltransferase 3A ATRX-DNMT3-DNMT3L domain
Embo Rep., 10, 2009
3A1B
  • Download 3a1b
  • View 3a1b
Molmil generated image of 3a1b
CRYSTAL STRUCTURE OF THE DNMT3A ADD DOMAIN IN COMPLEX WITH HISTONE H3
Descriptor:DNA (cytosine-5)-methyltransferase 3A, Histone H3.1, ZINC ION, ...
Authors:Otani, J., Arita, K., Ariyoshi, M., Shirakawa, M.
Deposit date:2009-03-28
Release date:2009-11-10
Last modified:2017-08-09
Method:X-RAY DIFFRACTION (2.292 Å)
Cite:Structural basis for recognition of H3K4 methylation status by the DNA methyltransferase 3A ATRX-DNMT3-DNMT3L domain
Embo Rep., 10, 2009
3A4R
  • Download 3a4r
  • View 3a4r
Molmil generated image of 3a4r
THE CRYSTAL STRUCTURE OF SUMO-LIKE DOMAIN 2 IN NIP45
Descriptor:NFATC2-interacting protein, 1,2-ETHANEDIOL, SULFATE ION
Authors:Sekiyama, N., Arita, K., Ikeda, Y., Ariyoshi, M., Tochio, H., Saitoh, H., Shirakawa, M.
Deposit date:2009-07-14
Release date:2010-02-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1 Å)
Cite:Structural basis for regulation of poly-SUMO chain by a SUMO-like domain of Nip45
Proteins, 78, 2009
3A4S
  • Download 3a4s
  • View 3a4s
Molmil generated image of 3a4s
THE CRYSTAL STRUCTURE OF THE SLD2:UBC9 COMPLEX
Descriptor:SUMO-conjugating enzyme UBC9, NFATC2-interacting protein
Authors:Sekiyama, N., Arita, K., Ikeda, Y., Ariyoshi, M., Tochio, H., Saitoh, H., Shirakawa, M.
Deposit date:2009-07-14
Release date:2010-02-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis for regulation of poly-SUMO chain by a SUMO-like domain of Nip45
Proteins, 78, 2009
<12>