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6JK5
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BU of 6jk5 by Molmil
Ca2+-dependent type II antifreeze protein (Ca2+-free form)
Descriptor: SULFATE ION, Type II antifreeze protein
Authors:Arai, T, Tsuda, S, Kondo, H, Nishimiya, Y.
Deposit date:2019-02-27
Release date:2019-06-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Calcium-Binding Generates the Semi-Clathrate Waters on a Type II Antifreeze Protein to Adsorb onto an Ice Crystal Surface.
Biomolecules, 9, 2019
6JK4
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BU of 6jk4 by Molmil
Ca2+-dependent type II antifreeze protein
Descriptor: CALCIUM ION, Type II antifreeze protein
Authors:Arai, T, Tsuda, S, Kondo, H, Nishimiya, Y.
Deposit date:2019-02-27
Release date:2019-06-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.06 Å)
Cite:Calcium-Binding Generates the Semi-Clathrate Waters on a Type II Antifreeze Protein to Adsorb onto an Ice Crystal Surface.
Biomolecules, 9, 2019
3ACS
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BU of 3acs by Molmil
Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase W488F mutant
Descriptor: Cellobiose Phosphorylase, SULFATE ION, beta-D-glucopyranose
Authors:Hidaka, M, Arai, T, Fushinobu, S.
Deposit date:2010-01-08
Release date:2010-12-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Engineering of cellobiose phosphorylase
To be Published
4WD3
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BU of 4wd3 by Molmil
Crystal structure of an L-amino acid ligase RizA
Descriptor: L-amino acid ligase
Authors:Kagawa, W, Arai, T, Kino, K, Kurumizaka, H.
Deposit date:2014-09-06
Release date:2015-09-09
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of RizA, an L-amino-acid ligase from Bacillus subtilis.
Acta Crystallogr.,Sect.F, 71, 2015
3OQJ
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BU of 3oqj by Molmil
Crystal structure of B. licheniformis CDPS yvmC-BLIC in complex with CAPSO
Descriptor: (2S)-3-(cyclohexylamino)-2-hydroxypropane-1-sulfonic acid, Putative uncharacterized protein yvmC
Authors:Bonnefond, L, Arai, T, Suzuki, T, Ishitani, R, Nureki, O.
Deposit date:2010-09-03
Release date:2011-02-23
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.399 Å)
Cite:Structural basis for nonribosomal peptide synthesis by an aminoacyl-tRNA synthetase paralog.
Proc.Natl.Acad.Sci.USA, 108, 2011
3OQI
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BU of 3oqi by Molmil
Crystal structure of B. licheniformis CDPS yvmC-BLIC in complex with CHES
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, GLYCEROL, Putative uncharacterized protein yvmC
Authors:Bonnefond, L, Arai, T, Suzuki, T, Ishitani, R, Nureki, O.
Deposit date:2010-09-03
Release date:2011-02-23
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.701 Å)
Cite:Structural basis for nonribosomal peptide synthesis by an aminoacyl-tRNA synthetase paralog.
Proc.Natl.Acad.Sci.USA, 108, 2011
3OQH
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BU of 3oqh by Molmil
Crystal structure of B. licheniformis CDPS yvmC-BLIC
Descriptor: GLYCEROL, Putative uncharacterized protein yvmC
Authors:Bonnefond, L, Arai, T, Suzuki, T, Ishitani, R, Nureki, O.
Deposit date:2010-09-03
Release date:2011-02-23
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Structural basis for nonribosomal peptide synthesis by an aminoacyl-tRNA synthetase paralog.
Proc.Natl.Acad.Sci.USA, 108, 2011
7BWY
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BU of 7bwy by Molmil
Crystal structure of ice-binding protein from an Antarctic ascomycete, Antarctomyces psychrotrophicus.
Descriptor: GLYCEROL, Ice-binding protein isoform1a
Authors:Yamauchi, A, Arai, T, Kondo, H, Tsuda, S.
Deposit date:2020-04-16
Release date:2020-05-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:An Ice-Binding Protein from an Antarctic Ascomycete Is Fine-Tuned to Bind to Specific Water Molecules Located in the Ice Prism Planes.
Biomolecules, 10, 2020
7BWX
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BU of 7bwx by Molmil
Crystal structure of ice-binding protein from an Antarctic ascomycete, Antarctomyces psychrotrophicus.
Descriptor: GLYCEROL, Ice-binding protein isoform1a, SULFATE ION
Authors:Yamauchi, A, Arai, T, Kondo, H, Tsuda, S.
Deposit date:2020-04-16
Release date:2020-05-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.904 Å)
Cite:An Ice-Binding Protein from an Antarctic Ascomycete Is Fine-Tuned to Bind to Specific Water Molecules Located in the Ice Prism Planes.
Biomolecules, 10, 2020
2Z1E
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BU of 2z1e by Molmil
Crystal structure of HypE from Thermococcus kodakaraensis (outward form)
Descriptor: Hydrogenase expression/formation protein HypE
Authors:Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
2Z1C
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BU of 2z1c by Molmil
Crystal structure of HypC from Thermococcus kodakaraensis KOD1
Descriptor: GLYCEROL, Hydrogenase expression/formation protein HypC, TETRAETHYLENE GLYCOL
Authors:Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
2Z1F
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BU of 2z1f by Molmil
Crystal structure of HypE from Thermococcus kodakaraensis (inward form)
Descriptor: Hydrogenase expression/formation protein HypE
Authors:Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
2Z1D
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BU of 2z1d by Molmil
Crystal structure of [NiFe] hydrogenase maturation protein, HypD from Thermococcus kodakaraensis
Descriptor: Hydrogenase expression/formation protein hypD, IRON/SULFUR CLUSTER
Authors:Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2014-11-12
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
3A43
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BU of 3a43 by Molmil
Crystal structure of HypA
Descriptor: Hydrogenase nickel incorporation protein hypA, ZINC ION
Authors:Watanabe, S, Arai, T, Matsumi, R, Aromi, H, Imanaka, T, Miki, K.
Deposit date:2009-06-30
Release date:2009-10-06
Last modified:2016-12-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of HypA, a nickel-binding metallochaperone for [NiFe] hydrogenase maturation.
J.Mol.Biol., 394, 2009
7DC5
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BU of 7dc5 by Molmil
Crystal structure of fungal antifreeze protein with intermediate activity
Descriptor: Antifreeze protein, SULFATE ION
Authors:Khan, N.M.M.U, Arai, T, Tsuda, S, Kondo, H.
Deposit date:2020-10-23
Release date:2021-10-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Characterization of microbial antifreeze protein with intermediate activity suggests that a bound-water network is essential for hyperactivity.
Sci Rep, 11, 2021
7DDB
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BU of 7ddb by Molmil
Crystal structure of fungal antifreeze protein with intermediate activity
Descriptor: Antifreeze protein, MAGNESIUM ION
Authors:Khan, N.M.M.U, Arai, T, Tsuda, S, Kondo, H.
Deposit date:2020-10-28
Release date:2021-11-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Characterization of microbial antifreeze protein with intermediate activity suggests that a bound-water network is essential for hyperactivity.
Sci Rep, 11, 2021
3A44
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BU of 3a44 by Molmil
Crystal structure of HypA in the dimeric form
Descriptor: Hydrogenase nickel incorporation protein hypA, ZINC ION
Authors:Watanabe, S, Arai, T, Matsumi, R, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2009-06-30
Release date:2009-10-06
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.31 Å)
Cite:Crystal structure of HypA, a nickel-binding metallochaperone for [NiFe] hydrogenase maturation.
J.Mol.Biol., 394, 2009
3VOT
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BU of 3vot by Molmil
Crystal structure of L-amino acid ligase from Bacillus licheniformis
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, CHLORIDE ION, ...
Authors:Suzuki, M, Takahashi, Y, Noguchi, A, Arai, T, Yagasaki, M, Kino, K, Saito, J.
Deposit date:2012-02-08
Release date:2012-11-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The structure of L-amino-acid ligase from Bacillus licheniformis
Acta Crystallogr.,Sect.D, 68, 2012
3ACT
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BU of 3act by Molmil
Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase Histidine mutant
Descriptor: Cellobiose Phosphorylase, GLYCEROL, PHOSPHATE ION, ...
Authors:Hidaka, M, Hayashi, M.A, Fushinobu, S.
Deposit date:2010-01-08
Release date:2010-12-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Engineering of cellobiose phosphorylase
To be Published
3AFJ
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BU of 3afj by Molmil
Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase triple mutant
Descriptor: Cellobiose Phosphorylase, PHOSPHATE ION, POTASSIUM ION, ...
Authors:Hidaka, M, Ogawa, N, Fushinobu, S.
Deposit date:2010-03-04
Release date:2011-03-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Engineering of cellobiose phosphorylase
To be Published
3S7T
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BU of 3s7t by Molmil
Crystal structure of SeMet B. licheniformis CDPS YvmC-Blic
Descriptor: Putative uncharacterized protein yvmC
Authors:Bonnefond, L, Ishitani, R, Nureki, O.
Deposit date:2011-05-26
Release date:2011-06-22
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.808 Å)
Cite:Structural basis for nonribosomal peptide synthesis by an aminoacyl-tRNA synthetase paralog.
Proc.Natl.Acad.Sci.USA, 108, 2011
5XQN
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BU of 5xqn by Molmil
Crystal structure of Notched-fin eelpout type III antifreeze protein (NFE6, AFP), C2221 form.
Descriptor: Ice-structuring protein, SULFATE ION
Authors:Adachi, M, Kondo, H, Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQR
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BU of 5xqr by Molmil
Crystal structure of Notched-fin eelpout type III antifreeze protein A20V mutant (NFE6, AFP), C2221 form
Descriptor: ACETATE ION, Ice-structuring protein
Authors:Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQP
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BU of 5xqp by Molmil
Crystal structure of Notched-fin eelpout type III antifreeze protein (NFE6, AFP), P212121 form
Descriptor: Ice-structuring protein, SULFATE ION
Authors:Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQU
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BU of 5xqu by Molmil
Crystal structure of Notched-fin eelpout type III antifreeze protein A20I mutant (NFE6, AFP), P212121 form
Descriptor: Ice-structuring protein
Authors:Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018

 

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