Author results

6JK4
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CA2+-DEPENDENT TYPE II ANTIFREEZE PROTEIN
Descriptor:Type II antifreeze protein, CALCIUM ION
Authors:Arai, T., Tsuda, S., Kondo, H., Nishimiya, Y.
Deposit date:2019-02-27
Release date:2019-06-26
Method:X-RAY DIFFRACTION (1.06 Å)
Cite:Calcium-Binding Generates the Semi-Clathrate Waters on a Type II Antifreeze Protein to Adsorb onto an Ice Crystal Surface.
Biomolecules, 9, 2019
6JK5
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CA2+-DEPENDENT TYPE II ANTIFREEZE PROTEIN (CA2+-FREE FORM)
Descriptor:Type II antifreeze protein, SULFATE ION
Authors:Arai, T., Tsuda, S., Kondo, H., Nishimiya, Y.
Deposit date:2019-02-27
Release date:2019-06-26
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Calcium-Binding Generates the Semi-Clathrate Waters on a Type II Antifreeze Protein to Adsorb onto an Ice Crystal Surface.
Biomolecules, 9, 2019
3ACS
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CRYSTAL STRUCTURE OF CELLVIBRIO GILVUS CELLOBIOSE PHOSPHORYLASE W488F MUTANT
Descriptor:Cellobiose Phosphorylase, BETA-D-GLUCOSE, SULFATE ION
Authors:Hidaka, M., Arai, T., Fushinobu, S.
Deposit date:2010-01-08
Release date:2010-12-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Engineering of cellobiose phosphorylase
To be Published
2Z1C
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CRYSTAL STRUCTURE OF HYPC FROM THERMOCOCCUS KODAKARAENSIS KOD1
Descriptor:Hydrogenase expression/formation protein HypC, GLYCEROL, TETRAETHYLENE GLYCOL
Authors:Watanabe, S., Matsumi, R., Arai, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
2Z1D
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CRYSTAL STRUCTURE OF [NIFE] HYDROGENASE MATURATION PROTEIN, HYPD FROM THERMOCOCCUS KODAKARAENSIS
Descriptor:Hydrogenase expression/formation protein hypD, IRON/SULFUR CLUSTER
Authors:Watanabe, S., Matsumi, R., Arai, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2014-11-12
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
2Z1E
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CRYSTAL STRUCTURE OF HYPE FROM THERMOCOCCUS KODAKARAENSIS (OUTWARD FORM)
Descriptor:Hydrogenase expression/formation protein HypE
Authors:Watanabe, S., Matsumi, R., Arai, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
2Z1F
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CRYSTAL STRUCTURE OF HYPE FROM THERMOCOCCUS KODAKARAENSIS (INWARD FORM)
Descriptor:Hydrogenase expression/formation protein HypE
Authors:Watanabe, S., Matsumi, R., Arai, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
3A43
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CRYSTAL STRUCTURE OF HYPA
Descriptor:Hydrogenase nickel incorporation protein hypA, ZINC ION
Authors:Watanabe, S., Arai, T., Matsumi, R., Aromi, H., Imanaka, T., Miki, K.
Deposit date:2009-06-30
Release date:2009-10-06
Last modified:2016-12-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of HypA, a nickel-binding metallochaperone for [NiFe] hydrogenase maturation.
J.Mol.Biol., 394, 2009
3A44
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CRYSTAL STRUCTURE OF HYPA IN THE DIMERIC FORM
Descriptor:Hydrogenase nickel incorporation protein hypA, ZINC ION
Authors:Watanabe, S., Arai, T., Matsumi, R., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2009-06-30
Release date:2009-10-06
Last modified:2017-02-22
Method:X-RAY DIFFRACTION (3.31 Å)
Cite:Crystal structure of HypA, a nickel-binding metallochaperone for [NiFe] hydrogenase maturation.
J.Mol.Biol., 394, 2009
3OQH
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CRYSTAL STRUCTURE OF B. LICHENIFORMIS CDPS YVMC-BLIC
Descriptor:Putative uncharacterized protein yvmC, GLYCEROL
Authors:Bonnefond, L., Arai, T., Suzuki, T., Ishitani, R., Nureki, O.
Deposit date:2010-09-03
Release date:2011-02-23
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Structural basis for nonribosomal peptide synthesis by an aminoacyl-tRNA synthetase paralog.
Proc.Natl.Acad.Sci.USA, 108, 2011
3OQI
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CRYSTAL STRUCTURE OF B. LICHENIFORMIS CDPS YVMC-BLIC IN COMPLEX WITH CHES
Descriptor:Putative uncharacterized protein yvmC, 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, GLYCEROL
Authors:Bonnefond, L., Arai, T., Suzuki, T., Ishitani, R., Nureki, O.
Deposit date:2010-09-03
Release date:2011-02-23
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.701 Å)
Cite:Structural basis for nonribosomal peptide synthesis by an aminoacyl-tRNA synthetase paralog.
Proc.Natl.Acad.Sci.USA, 108, 2011
3OQJ
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CRYSTAL STRUCTURE OF B. LICHENIFORMIS CDPS YVMC-BLIC IN COMPLEX WITH CAPSO
Descriptor:Putative uncharacterized protein yvmC, (2S)-3-(cyclohexylamino)-2-hydroxypropane-1-sulfonic acid
Authors:Bonnefond, L., Arai, T., Suzuki, T., Ishitani, R., Nureki, O.
Deposit date:2010-09-03
Release date:2011-02-23
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.399 Å)
Cite:Structural basis for nonribosomal peptide synthesis by an aminoacyl-tRNA synthetase paralog.
Proc.Natl.Acad.Sci.USA, 108, 2011
3VOT
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CRYSTAL STRUCTURE OF L-AMINO ACID LIGASE FROM BACILLUS LICHENIFORMIS
Descriptor:L-amino acid ligase, BL00235, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Suzuki, M., Takahashi, Y., Noguchi, A., Arai, T., Yagasaki, M., Kino, K., Saito, J.
Deposit date:2012-02-08
Release date:2012-11-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The structure of L-amino-acid ligase from Bacillus licheniformis
Acta Crystallogr.,Sect.D, 68, 2012
4WD3
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CRYSTAL STRUCTURE OF AN L-AMINO ACID LIGASE RIZA
Descriptor:L-amino acid ligase
Authors:Kagawa, W., Arai, T., Kino, K., Kurumizaka, H.
Deposit date:2014-09-06
Release date:2015-09-09
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of RizA, an L-amino-acid ligase from Bacillus subtilis
Acta Crystallogr.,Sect.F, 71, 2015
3ACT
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CRYSTAL STRUCTURE OF CELLVIBRIO GILVUS CELLOBIOSE PHOSPHORYLASE HISTIDINE MUTANT
Descriptor:Cellobiose Phosphorylase, BETA-D-GLUCOSE, PHOSPHATE ION, ...
Authors:Hidaka, M., Hayashi, M.A., Fushinobu, S.
Deposit date:2010-01-08
Release date:2010-12-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Engineering of cellobiose phosphorylase
To be Published
3AFJ
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CRYSTAL STRUCTURE OF CELLVIBRIO GILVUS CELLOBIOSE PHOSPHORYLASE TRIPLE MUTANT
Descriptor:Cellobiose Phosphorylase, BETA-D-GLUCOSE, PHOSPHATE ION, ...
Authors:Hidaka, M., Ogawa, N., Fushinobu, S.
Deposit date:2010-03-04
Release date:2011-03-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Engineering of cellobiose phosphorylase
To be Published
3S7T
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CRYSTAL STRUCTURE OF SEMET B. LICHENIFORMIS CDPS YVMC-BLIC
Descriptor:Putative uncharacterized protein yvmC
Authors:Bonnefond, L., Ishitani, R., Nureki, O.
Deposit date:2011-05-26
Release date:2011-06-22
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.808 Å)
Cite:Structural basis for nonribosomal peptide synthesis by an aminoacyl-tRNA synthetase paralog.
Proc.Natl.Acad.Sci.USA, 108, 2011
5XQN
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CRYSTAL STRUCTURE OF NOTCHED-FIN EELPOUT TYPE III ANTIFREEZE PROTEIN (NFE6, AFP), C2221 FORM.
Descriptor:Ice-structuring protein, SULFATE ION
Authors:Adachi, M., Kondo, H., Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQP
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CRYSTAL STRUCTURE OF NOTCHED-FIN EELPOUT TYPE III ANTIFREEZE PROTEIN (NFE6, AFP), P212121 FORM
Descriptor:Ice-structuring protein, SULFATE ION
Authors:Adachi, M., Shimizu, R., Shibazaki, C., Kondo, H., Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (1 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQR
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CRYSTAL STRUCTURE OF NOTCHED-FIN EELPOUT TYPE III ANTIFREEZE PROTEIN A20V MUTANT (NFE6, AFP), C2221 FORM
Descriptor:Ice-structuring protein, ACETATE ION
Authors:Adachi, M., Shimizu, R., Shibazaki, C., Kondo, H., Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQU
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CRYSTAL STRUCTURE OF NOTCHED-FIN EELPOUT TYPE III ANTIFREEZE PROTEIN A20I MUTANT (NFE6, AFP), P212121 FORM
Descriptor:Ice-structuring protein
Authors:Adachi, M., Shimizu, R., Shibazaki, C., Kondo, H., Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (1 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQV
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CRYSTAL STRUCTURE OF NOTCHED-FIN EELPOUT TYPE III ANTIFREEZE PROTEIN A20L MUTANT (NFE6, AFP), P21 FORM
Descriptor:Ice-structuring protein
Authors:Adachi, M., Shimizu, R., Shibazaki, C., Kondo, H., Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (0.97 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XR0
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CRYSTAL STRUCTURE OF NOTCHED-FIN EELPOUT TYPE III ANTIFREEZE PROTEIN A20T MUTANT (NFE6, AFP), P21 FORM
Descriptor:Ice-structuring protein
Authors:Adachi, M., Shimizu, R., Shibazaki, C., Kondo, H., Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (0.98 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018