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2RSX
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BU of 2rsx by Molmil
Solution structure of IseA, an inhibitor protein of DL-endopeptidases from Bacillus subtilis
Descriptor: Uncharacterized protein yoeB
Authors:Arai, R, Li, H, Tochio, N, Fukui, S, Kobayashi, N, Kitaura, C, Watanabe, S, Kigawa, T, Sekiguchi, J.
Deposit date:2012-08-09
Release date:2012-10-31
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution Structure of IseA, an Inhibitor Protein of DL-Endopeptidases from Bacillus subtilis, Reveals a Novel Fold with a Characteristic Inhibitory Loop
J.Biol.Chem., 287, 2012
1WZ7
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BU of 1wz7 by Molmil
Crystal structure of enhancer of rudimentary homologue (ERH)
Descriptor: Enhancer of rudimentary homolog
Authors:Arai, R, Kukimoto-Niino, M, Uda-Tochio, H, Morita, S, Uchikubo-Kamo, T, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-02-26
Release date:2005-05-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of an enhancer of rudimentary homolog (ERH) at 2.1 Angstroms resolution.
Protein Sci., 14, 2005
3A3U
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BU of 3a3u by Molmil
Crystal structure of MqnD (TTHA1568), a menaquinone biosynthetic enzyme from Thermus thermophilus HB8
Descriptor: 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL, L(+)-TARTARIC ACID, Menaquinone biosynthetic enzyme, ...
Authors:Arai, R, Nishino, A, Nagano, K, Uchikubo-Kamo, T, Katsura, K, Nishimoto, M, Toyama, M, Terada, T, Kuramitsu, S, Murayama, K, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-06-20
Release date:2009-07-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of MqnD (TTHA1568), a menaquinone biosynthetic enzyme from Thermus thermophilus HB8.
J.Struct.Biol., 168, 2009
1X42
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BU of 1x42 by Molmil
Crystal structure of a haloacid dehalogenase family protein (PH0459) from Pyrococcus horikoshii OT3
Descriptor: hypothetical protein PH0459
Authors:Arai, R, Kukimoto-Niino, M, Sugahara, M, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-12
Release date:2005-11-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the probable haloacid dehalogenase PH0459 from Pyrococcus horikoshii OT3
Protein Sci., 15, 2006
2CZI
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BU of 2czi by Molmil
Crystal structure of human myo-inositol monophosphatase 2 (IMPA2) with calcium and phosphate ions
Descriptor: CALCIUM ION, Inositol monophosphatase 2, PHOSPHATE ION
Authors:Arai, R, Ito, K, Ohnishi, T, Ohba, H, Yoshikawa, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-13
Release date:2006-07-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of human myo-inositol monophosphatase 2, the product of the putative susceptibility gene for bipolar disorder, schizophrenia, and febrile seizures
Proteins, 67, 2007
2CZK
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BU of 2czk by Molmil
Crystal structure of human myo-inositol monophosphatase 2 (IMPA2) (trigonal form)
Descriptor: Inositol monophosphatase 2
Authors:Arai, R, Ito, K, Hanawa-Suetsugu, K, Ohnishi, T, Ohba, H, Yoshikawa, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-13
Release date:2006-07-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of human myo-inositol monophosphatase 2, the product of the putative susceptibility gene for bipolar disorder, schizophrenia, and febrile seizures
Proteins, 67, 2007
2DDK
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BU of 2ddk by Molmil
Crystal structure of human myo-inositol monophosphatase 2 (IMPA2) (orthorhombic form)
Descriptor: Inositol monophosphatase 2
Authors:Arai, R, Ito, K, Kamo-Uchikubo, T, Bessho, Y, Ohba, H, Ohnishi, T, Yoshikawa, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-01-30
Release date:2007-02-06
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of human myo-inositol monophosphatase 2, the product of the putative susceptibility gene for bipolar disorder, schizophrenia, and febrile seizures
Proteins, 67, 2007
2CZL
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BU of 2czl by Molmil
Crystal structure of MqnD (TTHA1568), a menaquinone biosynthetic enzyme from Thermus thermophilus HB8 (Cys11 modified with beta-mercaptoethanol)
Descriptor: 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL, L(+)-TARTARIC ACID, POTASSIUM ION, ...
Authors:Arai, R, Nishino, A, Nagano, K, Kamo-Uchikubo, T, Nishimoto, M, Toyama, M, Terada, T, Murayama, K, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-13
Release date:2006-01-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of MqnD (TTHA1568), a menaquinone biosynthetic enzyme from Thermus thermophilus HB8.
J.Struct.Biol., 168, 2009
2CZ4
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BU of 2cz4 by Molmil
Crystal structure of a putative PII-like signaling protein (TTHA0516) from Thermus thermophilus HB8
Descriptor: ACETATE ION, CHLORIDE ION, hypothetical protein TTHA0516
Authors:Arai, R, Fusatomi, E, Kukimoto-Niino, M, Kawaguchi, S, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-10
Release date:2006-01-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Crystal structure of a putative PII-like signaling protein (TTHA0516) from Thermus thermophilus HB8
To be Published
2CZE
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BU of 2cze by Molmil
Crystal structure of orotidine 5'-phosphate decarboxylase from Pyrococcus horikoshii OT3 complexed with UMP
Descriptor: CITRIC ACID, GLYCEROL, Orotidine 5'-phosphate decarboxylase, ...
Authors:Arai, R, Ito, K, Kishishita, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-13
Release date:2006-01-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of orotidine 5'-phosphate decarboxylase from Pyrococcus horikoshii OT3 complexed with UMP
To be Published
2CZD
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BU of 2czd by Molmil
Crystal structure of orotidine 5'-phosphate decarboxylase from Pyrococcus horikoshii OT3 at 1.6 A resolution
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, GLYCEROL, Orotidine 5'-phosphate decarboxylase
Authors:Arai, R, Ito, K, Kamo-Uchikubo, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-13
Release date:2006-01-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of orotidine 5'-phosphate decarboxylase from Pyrococcus horikoshii OT3 at 1.6 A resolution
To be Published
2CZ5
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BU of 2cz5 by Molmil
Crystal structure of orotidine 5'-phosphate decarboxylase from Pyrococcus horikoshii OT3
Descriptor: CITRIC ACID, GLYCEROL, Orotidine 5'-phosphate decarboxylase
Authors:Arai, R, Ito, K, Kamo-Uchikubo, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-11
Release date:2006-01-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of orotidine 5'-phosphate decarboxylase from Pyrococcus horikoshii OT3
To be Published
2CWE
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BU of 2cwe by Molmil
Crystal structure of hypothetical transcriptional regulator protein, PH1932 from Pyrococcus horikoshii OT3
Descriptor: hypothetical transcription regulator protein, PH1932
Authors:Arai, R, Kishishita, S, Kukimoto-Niino, M, Wang, H, Sugawara, M, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-20
Release date:2005-12-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of hypothetical transcriptional regulator protein, PH1932 from Pyrococcus horikoshii OT3
To be Published
3VJF
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BU of 3vjf by Molmil
Crystal structure of de novo 4-helix bundle protein WA20
Descriptor: POTASSIUM ION, WA20
Authors:Arai, R, Kimura, A, Kobayashi, N, Matsuo, K, Sato, T, Wang, A.F, Platt, J.M, Bradley, L.H, Hecht, M.H.
Deposit date:2011-10-18
Release date:2012-03-28
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Domain-swapped dimeric structure of a stable and functional de novo four-helix bundle protein, WA20
J.Phys.Chem.B, 116, 2012
2CYX
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BU of 2cyx by Molmil
Structure of human ubiquitin-conjugating enzyme E2 G2 (UBE2G2/UBC7)
Descriptor: Ubiquitin-conjugating enzyme E2 G2
Authors:Yoshikawa, S, Arai, R, Murayama, K, Imai, Y, Takahashi, R, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-08
Release date:2006-04-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Structure of human ubiquitin-conjugating enzyme E2 G2 (UBE2G2/UBC7)
Acta Crystallogr.,Sect.F, 62, 2006
2CZH
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BU of 2czh by Molmil
Crystal structure of human myo-inositol monophosphatase 2 (IMPA2) with phosphate ion (orthorhombic form)
Descriptor: Inositol monophosphatase 2, PHOSPHATE ION
Authors:Ito, K, Arai, R, Kamo-Uchikubo, T, Ohnishi, T, Ohba, H, Yoshikawa, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-13
Release date:2006-07-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of human myo-inositol monophosphatase 2, the product of the putative susceptibility gene for bipolar disorder, schizophrenia, and febrile seizures
Proteins, 67, 2007
5X5X
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BU of 5x5x by Molmil
Crystal structure of the Fab fragment of anti-osteocalcin C-terminal peptide antibody KTM219
Descriptor: DI(HYDROXYETHYL)ETHER, FORMIC ACID, Fd chain of anti-osteocalcin antibody KTM219, ...
Authors:Komatsu, M, Dong, J, Ueda, H, Arai, R.
Deposit date:2017-02-18
Release date:2018-02-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the Fab fragment of anti-osteocalcin C-terminal peptide antibody KTM219
To be published
7XM1
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BU of 7xm1 by Molmil
Cryo-EM structure of mTIP60-Ba (metal-ion induced TIP60 (K67E) complex with barium ions
Descriptor: BARIUM ION, TIP60 K67E mutant
Authors:Ohara, N, Kawakami, N, Arai, R, Adachi, N, Moriya, T, Kawasaki, M, Miyamoto, K.
Deposit date:2022-04-24
Release date:2023-01-04
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (3.96 Å)
Cite:Reversible Assembly of an Artificial Protein Nanocage Using Alkaline Earth Metal Ions.
J.Am.Chem.Soc., 145, 2023
8H7C
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BU of 8h7c by Molmil
Crystal structure of a de novo enzyme, ferric enterobactin esterase Syn-F4 (K4T) - Pt derivative
Descriptor: ACETATE ION, CHLORIDE ION, De novo ferric enterobactin esterase Syn-F4, ...
Authors:Kurihara, K, Umezawa, K, Donnelly, A.E, Hecht, M.H, Arai, R.
Deposit date:2022-10-19
Release date:2023-09-20
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure and activity of a de novo enzyme, ferric enterobactin esterase Syn-F4.
Proc.Natl.Acad.Sci.USA, 120, 2023
8H7E
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BU of 8h7e by Molmil
Crystal structure of a de novo enzyme, ferric enterobactin esterase Syn-F4 (K4T) at 2.0 angstrom resolution
Descriptor: ACETATE ION, De novo ferric enterobactin esterase Syn-F4
Authors:Kurihara, K, Umezawa, K, Donnelly, A.E, Hecht, M.H, Arai, R.
Deposit date:2022-10-19
Release date:2023-09-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure and activity of a de novo enzyme, ferric enterobactin esterase Syn-F4.
Proc.Natl.Acad.Sci.USA, 120, 2023
8H7D
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BU of 8h7d by Molmil
Crystal structure of a de novo enzyme, ferric enterobactin esterase Syn-F4 (K4T)
Descriptor: ACETATE ION, De novo ferric enterobactin esterase Syn-F4
Authors:Kurihara, K, Umezawa, K, Donnelly, A.E, Hecht, M.H, Arai, R.
Deposit date:2022-10-19
Release date:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure and activity of a de novo enzyme, ferric enterobactin esterase Syn-F4.
Proc.Natl.Acad.Sci.USA, 120, 2023
4YSH
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BU of 4ysh by Molmil
Crystal structure of glycine oxidase from Geobacillus kaustophilus
Descriptor: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, GLYCINE, ...
Authors:Shiono, T, Nomura, T, Arai, R.
Deposit date:2015-03-17
Release date:2016-03-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of glycine oxidase from Geobacillus kaustophilus
to be published
7EQ9
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BU of 7eq9 by Molmil
Cryo-EM structure of designed protein nanoparticle TIP60 (Truncated Icosahedral Protein composed of 60-mer fusion proteins)
Descriptor: TIP60
Authors:Obata, J, Kawakami, N, Tsutsumi, A, Miyamoto, K, Kikkawa, M, Arai, R.
Deposit date:2021-04-30
Release date:2021-09-15
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Icosahedral 60-meric porous structure of designed supramolecular protein nanoparticle TIP60.
Chem.Commun.(Camb.), 57, 2021
6KOS
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BU of 6kos by Molmil
Crystal structure of SUWA (Super WA20), a hyper-stable de novo protein with a dimeric bisecting topology
Descriptor: SUWA (Super WA20)
Authors:Kimura, N, Arai, R.
Deposit date:2019-08-13
Release date:2020-01-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:HyperstableDe NovoProtein with a Dimeric Bisecting Topology.
Acs Synth Biol, 9, 2020
6KST
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BU of 6kst by Molmil
Crystal structure of the catalytic domain of chitinase ChiL from Chitiniphilus shinanonensis (CsChiL)
Descriptor: 1,2-ETHANEDIOL, 2-METHOXYETHANOL, CHLORIDE ION, ...
Authors:Ueda, M, Shimosaka, M, Arai, R.
Deposit date:2019-08-26
Release date:2020-08-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Crystal structure of a chitinase (CsChiL) from Chitiniphilus shinanonensis
To be published

 

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