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5ZMJ
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BU of 5zmj by Molmil
Crystal structure of the Fab region of a neutralizing fully human antibody against GM-CSF
Descriptor: Heavy chain of a Fab fraction of human IgG, Light chain of a Fab fraction of human IgG, SODIUM ION, ...
Authors:Angkawidjaja, C, Torashima, T.
Deposit date:2018-04-04
Release date:2019-04-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Crystal structure of the Fab region of a neutralizing antibody against granulocyte-macrophage colony-stimulating factor.
Acta Crystallogr.,Sect.F, 75, 2019
2Z8Z
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BU of 2z8z by Molmil
Crystal structure of a platinum-bound S445C mutant of Pseudomonas sp. MIS38 lipase
Descriptor: CALCIUM ION, Lipase, PLATINUM (II) ION, ...
Authors:Angkawidjaja, C, You, D.J, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
Deposit date:2007-09-13
Release date:2007-10-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of a family I.3 lipase from Pseudomonas sp. MIS38 in a closed conformation
FEBS Lett., 581, 2007
2Z8X
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BU of 2z8x by Molmil
Crystal structure of extracellular lipase from Pseudomonas sp. MIS38
Descriptor: CALCIUM ION, Lipase, ZINC ION
Authors:Angkawidjaja, C, You, D.J, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
Deposit date:2007-09-11
Release date:2007-10-30
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Crystal structure of a family I.3 lipase from Pseudomonas sp. MIS38 in a closed conformation
FEBS Lett., 581, 2007
2ZVD
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BU of 2zvd by Molmil
Crystal structure of Pseudomonas sp. MIS38 lipase in an open conformation
Descriptor: CALCIUM ION, Lipase
Authors:Angkawidjaja, C, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
Deposit date:2008-11-05
Release date:2009-11-10
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:X-ray Crystallographic and MD Simulation Studies on the Mechanism of Interfacial Activation of a Family I.3 Lipase with Two Lids
J.Mol.Biol., 2010
3A70
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BU of 3a70 by Molmil
Crystal structure of Pseudomonas sp. MIS38 lipase in complex with diethyl phosphate
Descriptor: ACETATE ION, CALCIUM ION, DIETHYL PHOSPHONATE, ...
Authors:Angkawidjaja, C, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
Deposit date:2009-09-10
Release date:2010-05-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:X-ray Crystallographic and MD Simulation Studies on the Mechanism of Interfacial Activation of a Family I.3 Lipase with Two Lids
J.Mol.Biol., 2010
3AIM
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BU of 3aim by Molmil
R267E mutant of a HSL-like carboxylesterase from Sulfolobus tokodaii
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 303aa long hypothetical esterase, ...
Authors:Angkawidjaja, C, Kanaya, S.
Deposit date:2010-05-16
Release date:2011-06-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and stability of a thermostable carboxylesterase from the thermoacidophilic archaeon Sulfolobustokodaii
Febs J., 279, 2012
3A6Z
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BU of 3a6z by Molmil
Crystal structure of Pseudomonas sp. MIS38 lipase (PML) in the open conformation following dialysis against Ca-free buffer
Descriptor: CALCIUM ION, Lipase
Authors:Angkawidjaja, C, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
Deposit date:2009-09-10
Release date:2010-05-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:X-ray Crystallographic and MD Simulation Studies on the Mechanism of Interfacial Activation of a Family I.3 Lipase with Two Lids
J.Mol.Biol., 2010
3AIL
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BU of 3ail by Molmil
Crystal structure of a HSL-like carboxylesterase from Sulfolobus tokodaii complexed with paraoxon
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, 303aa long hypothetical esterase, DIETHYL PHOSPHONATE, ...
Authors:Angkawidjaja, C, Kanaya, S.
Deposit date:2010-05-16
Release date:2011-06-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Structure and stability of a thermostable carboxylesterase from the thermoacidophilic archaeon Sulfolobustokodaii
Febs J., 279, 2012
3AIK
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BU of 3aik by Molmil
Crystal structure of a HSL-like carboxylesterase from Sulfolobus tokodaii
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 303aa long hypothetical esterase, ...
Authors:Angkawidjaja, C, Kanaya, S.
Deposit date:2010-05-16
Release date:2011-06-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure and stability of a thermostable carboxylesterase from the thermoacidophilic archaeon Sulfolobustokodaii
Febs J., 279, 2012
3AIN
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BU of 3ain by Molmil
R267G mutant of a HSL-like carboxylesterase from Sulfolobus tokodaii
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 303aa long hypothetical esterase, ...
Authors:Angkawidjaja, C, Kanaya, S.
Deposit date:2010-05-16
Release date:2011-06-08
Last modified:2012-09-05
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structure and stability of a thermostable carboxylesterase from the thermoacidophilic archaeon Sulfolobustokodaii
Febs J., 279, 2012
3AIO
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BU of 3aio by Molmil
R267K mutant of a HSL-like carboxylesterase from Sulfolobus tokodaii
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 303aa long hypothetical esterase, ...
Authors:Angkawidjaja, C, Kanaya, S.
Deposit date:2010-05-16
Release date:2011-06-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure and stability of a thermostable carboxylesterase from the thermoacidophilic archaeon Sulfolobustokodaii
Febs J., 279, 2012
2ZJ6
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BU of 2zj6 by Molmil
Crystal structure of D337A mutant of Pseudomonas sp. MIS38 lipase
Descriptor: CALCIUM ION, Lipase, ZINC ION
Authors:Angkawidjaja, C, Kuwahara, K, Kanaya, S.
Deposit date:2008-02-29
Release date:2008-12-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Importance of the Ca2+-binding sites in the N-catalytic domain of a family I.3 lipase for activity and stability
Protein Eng.Des.Sel., 21, 2008
2ZJ7
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BU of 2zj7 by Molmil
Crystal structure of D157A mutant of Pseudomonas sp. MIS38 lipase
Descriptor: CALCIUM ION, Lipase, ZINC ION
Authors:Angkawidjaja, C, Kuwahara, K, Kanaya, S.
Deposit date:2008-02-29
Release date:2008-12-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Importance of the Ca2+-binding sites in the N-catalytic domain of a family I.3 lipase for activity and stability
Protein Eng.Des.Sel., 21, 2008
2ZQB
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BU of 2zqb by Molmil
Crystal structure of a psychrotrophic RNaseHI variant with sextuple thermostabilizing mutations
Descriptor: Ribonuclease HI, SULFATE ION
Authors:Angkawidjaja, C, Kanaya, S.
Deposit date:2008-08-07
Release date:2009-06-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Destabilization of psychrotrophic RNase HI in a localized fashion as revealed by mutational and X-ray crystallographic analyses
Febs J., 276, 2009
3ALY
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BU of 3aly by Molmil
Crystal Structure of RNase HI from Sulfolobus tokodaii with C-terminal deletion
Descriptor: Putative uncharacterized protein ST0753
Authors:Angkawidjaja, C, Takano, K, Kanaya, S.
Deposit date:2010-08-10
Release date:2011-06-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Stabilization by fusion to the C-terminus of hyperthermophile Sulfolobus tokodaii RNase HI: a possibility of protein stabilization tag
Plos One, 6, 2011
3ASM
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BU of 3asm by Molmil
Crystal structure of Q54A mutant protein of Bst-RNase HIII
Descriptor: Ribonuclease HIII
Authors:Angkawidjaja, C, Kanaya, S.
Deposit date:2010-12-16
Release date:2011-06-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.603 Å)
Cite:Identification of the substrate binding site in the N-terminal TBP-like domain of RNase H3.
Febs Lett., 585, 2011
3AUK
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BU of 3auk by Molmil
Crystal structure of a lipase from Geobacillus sp. SBS-4S
Descriptor: CALCIUM ION, CHLORIDE ION, Lipase, ...
Authors:Angkawidjaja, C, Tayyab, M, Rashid, N, Kanaya, S.
Deposit date:2011-02-08
Release date:2012-02-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Crystal structure of a lipase from Geobacillus sp. SBS-4S
TO BE PUBLISHED
4E19
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BU of 4e19 by Molmil
Crystal structure of RNase H1 from halophilic archaeon Halobacterium salinarum NRC-1
Descriptor: MANGANESE (II) ION, ribonuclease H1
Authors:You, D.J, Angkawidjaja, C, Koga, Y, Kanaya, S.
Deposit date:2012-03-06
Release date:2013-03-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Crystal structure of RNase H1 from halophilic archaeon Halobacterium salinarum NRC-1
To be Published
5X7K
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BU of 5x7k by Molmil
Crystal structure of the nucleotide-binding domain (NBD) of LipB, a ABC transporter subunit of a type I secretion system
Descriptor: Lipase B
Authors:Okano, H, Angkawidjaja, C, Takano, K.
Deposit date:2017-02-27
Release date:2017-11-15
Last modified:2017-12-13
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural Basis for the Serratia marcescens Lipase Secretion System: Crystal Structures of the Membrane Fusion Protein and Nucleotide-Binding Domain
Biochemistry, 56, 2017
4NYN
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BU of 4nyn by Molmil
Crystal structure of RNase H1 from halophilic archaeon Halobacterium salinarum NRC-1
Descriptor: MANGANESE (II) ION, Ribonuclease HI
Authors:You, D.J, Angkawidjaja, C, Koga, Y, Kanaya, S.
Deposit date:2013-12-11
Release date:2014-02-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Crystal structure of RNase H1 from halophilic archaeon Halobacterium salinarum NRC-1
To be Published
6K79
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BU of 6k79 by Molmil
Glycerol kinase form Thermococcus kodakarensis, complex structure with substrate.
Descriptor: GLYCEROL, Glycerol kinase, TRIETHYLENE GLYCOL
Authors:Koga, Y, Angkawidjaja, C, Matsumura, H, Hokao, R.
Deposit date:2019-06-06
Release date:2020-06-10
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Structural analysis of hexameric structure of glycerol kinase from Thermococcus kodakaraeinsis KOD1
To Be Published
6K78
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BU of 6k78 by Molmil
Glycerol kinase form Thermococcus kodakarensis, complex structure with substrate.
Descriptor: GLYCEROL, Glycerol kinase, TRIETHYLENE GLYCOL
Authors:Koga, Y, Angkawidjaja, C, Matsumura, H, Hokao, R.
Deposit date:2019-06-06
Release date:2020-06-10
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Structural analysis of hexameric structure of glycerol kinase from Thermococcus kodakaraeinsis KOD1
To Be Published
6K76
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BU of 6k76 by Molmil
Glycerol kinase form Thermococcus kodakarensis, complex structure with substrate.
Descriptor: Glycerol kinase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Koga, Y, Angkawidjaja, C, Matsumura, H, Hokao, R.
Deposit date:2019-06-06
Release date:2020-06-10
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Structural analysis of hexameric structure of glycerol kinase from Thermococcus kodakaraeinsis KOD1
To Be Published
3WHI
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BU of 3whi by Molmil
Crystal structure of unautoprocessed form of IS1-inserted Pro-subtilisin E
Descriptor: CALCIUM ION, Subtilisin E
Authors:Uehara, R, Angkawidjaja, C, Koga, Y, Kanaya, S.
Deposit date:2013-08-26
Release date:2013-12-25
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Formation of the High-Affinity Calcium Binding Site in Pro-subtilisin E with the Insertion Sequence IS1 of Pro-Tk-subtilisin
Biochemistry, 52, 2013
3WYD
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BU of 3wyd by Molmil
C-terminal esterase domain of LC-Est1
Descriptor: LC-Est1C
Authors:Okano, H, Hong, X, Angkawidjaja, C, Kanaya, S.
Deposit date:2014-08-26
Release date:2014-11-12
Last modified:2022-08-24
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Structural and biochemical characterization of a metagenome-derived esterase with a long N-terminal extension.
Protein Sci., 24, 2015

 

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