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2ZTB
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BU of 2ztb by Molmil
Crystal structure of the parasporin-2 Bacillus thuringiensis toxin that recognizes cancer cells
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Crystal protein, ...
Authors:Akiba, T.
Deposit date:2008-09-29
Release date:2009-01-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Crystal structure of the parasporin-2 Bacillus thuringiensis toxin that recognizes cancer cells
J.Mol.Biol., 386, 2009
2CVH
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BU of 2cvh by Molmil
Crystal structure of the RadB recombinase
Descriptor: DNA repair and recombination protein radB
Authors:Akiba, T, Ishii, N, Rashid, N, Morikawa, M, Imanaka, T, Harata, K.
Deposit date:2005-06-03
Release date:2005-08-09
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of RadB recombinase from a hyperthermophilic archaeon, Thermococcus kodakaraensis KOD1: an implication for the formation of a near-7-fold helical assembly
Nucleic Acids Res., 33, 2005
2CVF
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BU of 2cvf by Molmil
Crystal structure of the RadB recombinase
Descriptor: DNA repair and recombination protein radB
Authors:Akiba, T, Ishii, N, Rashid, N, Morikawa, M, Imanaka, T, Harata, K.
Deposit date:2005-06-03
Release date:2005-08-09
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of RadB recombinase from a hyperthermophilic archaeon, Thermococcus kodakaraensis KOD1: an implication for the formation of a near-7-fold helical assembly
Nucleic Acids Res., 33, 2005
2D42
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BU of 2d42 by Molmil
Crystal structure analysis of a non-toxic crystal protein from Bacillus thuringiensis
Descriptor: non-toxic crystal protein
Authors:Akiba, T, Higuchi, K, Mizuki, E, Ekino, K, Shin, T, Ohba, M, Kanai, R, Harata, K.
Deposit date:2005-10-05
Release date:2006-01-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Nontoxic crystal protein from Bacillus thuringiensis demonstrates a remarkable structural similarity to beta-pore-forming toxins
Proteins, 63, 2006
1VFF
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BU of 1vff by Molmil
beta-glycosidase from Pyrococcus horikoshii
Descriptor: beta-glucosidase
Authors:Akiba, T, Nishio, M, Matsui, I, Harata, K.
Deposit date:2004-04-12
Release date:2005-03-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:X-ray structure of a membrane-bound beta-glycosidase from the hyperthermophilic archaeon Pyrococcus horikoshii
Proteins, 57, 2004
5AWL
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BU of 5awl by Molmil
CRYSTAL STRUCTURE OF A MUTANT OF CHIGNOLIN, CLN025
Descriptor: A mutant of Chignolin, CLN025
Authors:Akiba, T, Ishimura, M, Odahara, T, Harata, K, Honda, S.
Deposit date:2015-07-05
Release date:2015-08-12
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.11 Å)
Cite:Crystal structure of a ten-amino acid protein
J.Am.Chem.Soc., 130, 2008
2O4A
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BU of 2o4a by Molmil
Crystal Structure of the N-terminal CUT Domain of SATB1 Bound to Matrix Attachment Region DNA
Descriptor: DNA (5'-D(*DGP*DCP*DAP*DTP*DAP*DTP*DAP*DTP*DTP*DAP*DGP*DC)-3'), DNA (5'-D(*DGP*DCP*DTP*DAP*DAP*DTP*DAP*DTP*DAP*DTP*DGP*DC)-3'), DNA-binding protein SATB1
Authors:Yamasaki, K, Akiba, T, Harata, K.
Deposit date:2006-12-04
Release date:2007-08-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural basis for recognition of the matrix attachment region of DNA by transcription factor SATB1.
Nucleic Acids Res., 35, 2007
2O49
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BU of 2o49 by Molmil
Crystal Structure of the N-terminal CUT domain of SATB1 Bound to Matrix Attachment Region DNA
Descriptor: DNA (5'-D(*DGP*DCP*DAP*DTP*DAP*DTP*DAP*DTP*DTP*DAP*DGP*DC)-3'), DNA (5'-D(*DGP*DCP*DTP*DAP*DAP*DTP*DAP*DTP*DAP*DTP*DGP*DC)-3'), DNA-binding protein SATB1
Authors:Yamasaki, K, Akiba, T, Harata, K.
Deposit date:2006-12-04
Release date:2007-08-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for recognition of the matrix attachment region of DNA by transcription factor SATB1.
Nucleic Acids Res., 35, 2007
2Z12
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BU of 2z12 by Molmil
Structure of the transformed monoclinic lysozyme by controlled dehydration
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Harata, K, Akiba, T.
Deposit date:2007-05-07
Release date:2008-03-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Effect of a sodium ion on the dehydration-induced phase transition of monoclinic lysozyme crystals.
Acta Crystallogr.,Sect.D, 63, 2007
2Z18
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BU of 2z18 by Molmil
Phase transition of monoclinic lysozyme crystal soaked in a 10% NaCl solution
Descriptor: CHLORIDE ION, Lysozyme C, NITROGEN MOLECULE, ...
Authors:Harata, K, Akiba, T.
Deposit date:2007-05-08
Release date:2008-03-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Effect of a sodium ion on the dehydration-induced phase transition of monoclinic lysozyme crystals.
Acta Crystallogr.,Sect.D, 63, 2007
2Z19
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BU of 2z19 by Molmil
Phase transition of monoclinic lysozyme crystal soaked in a saturated NaCl solution
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Harata, K, Akiba, T.
Deposit date:2007-05-08
Release date:2008-03-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Effect of a sodium ion on the dehydration-induced phase transition of monoclinic lysozyme crystals.
Acta Crystallogr.,Sect.D, 63, 2007
1WP6
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BU of 1wp6 by Molmil
Crystal structure of maltohexaose-producing amylase from alkalophilic Bacillus sp.707.
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, Glucan 1,4-alpha-maltohexaosidase, ...
Authors:Kanai, R, Haga, K, Akiba, T, Yamane, K, Harata, K.
Deposit date:2004-08-31
Release date:2004-11-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Biochemical and crystallographic analyses of maltohexaose-producing amylase from alkalophilic Bacillus sp. 707
Biochemistry, 43, 2004
1WPC
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BU of 1wpc by Molmil
Crystal structure of maltohexaose-producing amylase complexed with pseudo-maltononaose
Descriptor: 4,6-dideoxy-alpha-D-xylo-hexopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, 4,6-dideoxy-alpha-D-xylo-hexopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-beta-D-galactopyranose, 6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4-ENE-1,2,3-TRIOL, ...
Authors:Kanai, R, Haga, K, Akiba, T, Yamane, K, Harata, K.
Deposit date:2004-09-01
Release date:2004-11-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Biochemical and crystallographic analyses of maltohexaose-producing amylase from alkalophilic Bacillus sp. 707
Biochemistry, 43, 2004
2D3L
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BU of 2d3l by Molmil
Crystal structure of maltohexaose-producing amylase from Bacillus sp.707 complexed with maltopentaose.
Descriptor: CALCIUM ION, Glucan 1,4-alpha-maltohexaosidase, SODIUM ION, ...
Authors:Kanai, R, Haga, K, Akiba, T, Yamane, K, Harata, K.
Deposit date:2005-09-29
Release date:2006-03-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Role of Trp140 at subsite -6 on the maltohexaose production of maltohexaose-producing amylase from alkalophilic Bacillus sp.707
Protein Sci., 15, 2006
2D3N
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BU of 2d3n by Molmil
Crystal structure of maltohexaose-producing amylase from Bacillus sp.707 complexed with maltohexaose
Descriptor: CALCIUM ION, Glucan 1,4-alpha-maltohexaosidase, SODIUM ION, ...
Authors:Kanai, R, Haga, K, Akiba, T, Yamane, K, Harata, K.
Deposit date:2005-09-29
Release date:2006-03-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Role of Trp140 at subsite -6 on the maltohexaose production of maltohexaose-producing amylase from alkalophilic Bacillus sp.707
Protein Sci., 15, 2006
1V3M
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BU of 1v3m by Molmil
Crystal structure of F283Y mutant cyclodextrin glycosyltransferase complexed with a pseudo-tetraose derived from acarbose
Descriptor: 4,6-dideoxy-alpha-D-xylo-hexopyranose-(1-4)-beta-D-galactopyranose, 6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4-ENE-1,2,3-TRIOL, CALCIUM ION, ...
Authors:Kanai, R, Haga, K, Akiba, T, Yamane, K, Harata, K.
Deposit date:2003-11-03
Release date:2004-08-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Role of Phe283 in enzymatic reaction of cyclodextrin glycosyltransferase from alkalophilic Bacillus sp.1011: Substrate binding and arrangement of the catalytic site
PROTEIN SCI., 13, 2004
1V3K
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BU of 1v3k by Molmil
Crystal structure of F283Y mutant cyclodextrin glycosyltransferase
Descriptor: CALCIUM ION, Cyclomaltodextrin glucanotransferase
Authors:Kanai, R, Haga, K, Akiba, T, Yamane, K, Harata, K.
Deposit date:2003-11-03
Release date:2004-08-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Role of Phe283 in enzymatic reaction of cyclodextrin glycosyltransferase from alkalophilic Bacillus sp.1011: substrate binding and arrangement of the catalytic site
PROTEIN SCI., 13, 2004
1V7T
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BU of 1v7t by Molmil
Triclinic lysozyme with low solvent content obtained by phase transition
Descriptor: Lysozyme C, NITRATE ION, SODIUM ION
Authors:Harata, K, Akiba, T.
Deposit date:2003-12-22
Release date:2004-04-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:Phase transition of triclinic hen egg-white lysozyme crystal associated with sodium binding.
Acta Crystallogr.,Sect.D, 60, 2004
1V3J
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BU of 1v3j by Molmil
Crystal structure of F283L mutant cyclodextrin glycosyltransferase
Descriptor: CALCIUM ION, Cyclomaltodextrin glucanotransferase
Authors:Kanai, R, Haga, K, Akiba, T, Yamane, K, Harata, K.
Deposit date:2003-11-03
Release date:2004-08-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Role of Phe283 in enzymatic reaction of cyclodextrin glycosyltransferase from alkalophilic Bacillus sp.1011: Substrate binding and arrangement of the catalytic site
PROTEIN SCI., 13, 2004
1V7S
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BU of 1v7s by Molmil
Triclinic hen lysozyme crystallized at 313K from a D2O solution
Descriptor: Lysozyme C, NITRATE ION
Authors:Harata, K, Akiba, T.
Deposit date:2003-12-22
Release date:2004-04-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:Phase transition of triclinic hen egg-white lysozyme crystal associated with sodium binding.
Acta Crystallogr.,Sect.D, 60, 2004
1V3L
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BU of 1v3l by Molmil
Crystal structure of F283L mutant cyclodextrin glycosyltransferase complexed with a pseudo-tetraose derived from acarbose
Descriptor: 4,6-dideoxy-alpha-D-xylo-hexopyranose-(1-4)-alpha-D-glucopyranose, 4,6-dideoxy-alpha-D-xylo-hexopyranose-(1-4)-beta-D-galactopyranose, 6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4-ENE-1,2,3-TRIOL, ...
Authors:Kanai, R, Haga, K, Akiba, T, Yamane, K, Harata, K.
Deposit date:2003-11-03
Release date:2004-08-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Role of Phe283 in enzymatic reaction of cyclodextrin glycosyltransferase from alkalophilic Bacillus sp.1011: Substrate binding and arrangement of the catalytic site
PROTEIN SCI., 13, 2004
2D4K
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BU of 2d4k by Molmil
Monoclinic hen egg-white lysozyme crystallized at 313K
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Harata, K, Akiba, T.
Deposit date:2005-10-20
Release date:2006-07-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Structural phase transition of monoclinic crystals of hen egg-white lysozyme
ACTA CRYSTALLOGR.,SECT.D, 62, 2006
2D4I
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BU of 2d4i by Molmil
Monoclinic hen egg-white lysozyme crystallized at pH4.5 form heavy water solution
Descriptor: Lysozyme C, NITRATE ION, SODIUM ION
Authors:Harata, K, Akiba, T.
Deposit date:2005-10-20
Release date:2006-07-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Structural phase transition of monoclinic crystals of hen egg-white lysozyme
ACTA CRYSTALLOGR.,SECT.D, 62, 2006
2D4J
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BU of 2d4j by Molmil
Transformed monoclinic crystal of hen egg-white lysozyme from a heavy water solution
Descriptor: Lysozyme C, NITRATE ION
Authors:Harata, K, Akiba, T.
Deposit date:2005-10-20
Release date:2006-07-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Structural phase transition of monoclinic crystals of hen egg-white lysozyme
ACTA CRYSTALLOGR.,SECT.D, 62, 2006
2DFC
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BU of 2dfc by Molmil
Xylanase II from Tricoderma reesei at 293K
Descriptor: Endo-1,4-beta-xylanase 2, IODIDE ION
Authors:Harata, K, Akiba, T.
Deposit date:2006-02-28
Release date:2006-07-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:Structure of an orthorhombic form of xylanase II from Trichoderma reesei and analysis of thermal displacement.
ACTA CRYSTALLOGR.,SECT.D, 62, 2006

 

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