Author results

1FEQ
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NMR SOLUTION STRUCTURE OF THE ANTICODON OF TRNA(LYS3) WITH T6A MODIFICATION AT POSITION 37
Descriptor:5'-R(*GP*CP*AP*GP*AP*CP*UP*UP*UP*UP*(T6A)P*AP*UP*CP*UP*GP*C)-3'
Authors:Stuart, J.W., Gdaniec, Z., Guenther, R.H., Marszalek, M., Sochacka, E., Malkiewicz, A., Agris, P.F.
Deposit date:2000-07-21
Release date:2000-11-22
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Functional anticodon architecture of human tRNALys3 includes disruption of intraloop hydrogen bonding by the naturally occurring amino acid modification, t6A.
Biochemistry, 39, 2000
1KOS
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SOLUTION NMR STRUCTURE OF AN ANALOG OF THE YEAST TRNA PHE T STEM LOOP CONTAINING RIBOTHYMIDINE AT ITS NATURALLY OCCURRING POSITION
Descriptor:5'-R(*CP*UP*GP*UP*GP*(5MU)P*UP*CP*GP*AP*UP*(CH)P*CP*AP*CP*AP*G)- 3'
Authors:Koshlap, K.M., Guenther, R., Sochacka, E., Malkiewicz, A., Agris, P.F.
Deposit date:1999-05-03
Release date:1999-10-22
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A distinctive RNA fold: the solution structure of an analogue of the yeast tRNAPhe T Psi C domain.
Biochemistry, 38, 1999
1LUU
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NMR SOLUTION STRUCTURE OF THE ANTICODON OF YEAST TRNA-PHE WITH 4 MODIFICATIONS (OMC32 OMG34 1MG37 5MC40)
Descriptor:5'-R(*CP*CP*AP*GP*AP*(OMC)P*UP*(OMG)P*AP*AP*(1MG)P*AP*UP*(5MC)P*UP*GP*G)-3'
Authors:Stuart, J.W., Koshlap, K.M., Guenther, R.H., Agris, P.F.
Deposit date:2002-05-23
Release date:2003-09-09
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Naturally-occurring Modification Restricts the Anticodon Domain Conformational Space of tRNA(Phe).
J.Mol.Biol., 334, 2003
1LUX
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NMR SOLUTION STRUCTURE OF THE ANTICODON OF YEAST TRNA-PHE WITH 3 MODIFICATIONS (OMC32 OMG34 M5C40)
Descriptor:5'-R(*CP*CP*AP*GP*AP*(OMC)P*UP*(OMG)P*AP*AP*GP*AP*UP*(5MC)P*UP*GP*G)-3'
Authors:Stuart, J.W., Koshlap, K.M., Guenther, R.H., Agris, P.F.
Deposit date:2002-05-23
Release date:2003-09-09
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Naturally-occurring Modification Restricts the Anticodon Domain Conformational Space of tRNA(Phe).
J.Mol.Biol., 334, 2003
1XMO
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CRYSTAL STRUCTURE OF MNM5U34T6A37-TRNALYSUUU COMPLEXED WITH AAG-MRNA IN THE DECODING CENTER
Descriptor:16S ribosomal RNA, A-Site Messenger RNA, Anticodon Transfer RNA, ...
Authors:Murphy, F.V., Ramakrishnan, V., Malkiewicz, A., Agris, P.F.
Deposit date:2004-10-04
Release date:2004-12-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:The role of modifications in codon discrimination by tRNA(Lys)(UUU).
Nat.Struct.Mol.Biol., 11, 2004
1XMQ
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CRYSTAL STRUCTURE OF T6A37-ASLLYSUUU AAA-MRNA BOUND TO THE DECODING CENTER
Descriptor:16s ribosomal RNA, A-Site Messenger RNA, Anticodon RNA, ...
Authors:Murphy, F.V., Ramakrishnan, V., Malkiewicz, A., Agris, P.F.
Deposit date:2004-10-04
Release date:2004-12-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:The role of modifications in codon discrimination by tRNA(Lys)(UUU).
Nat.Struct.Mol.Biol., 11, 2004
229D
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DNA ANALOG OF YEAST TRANSFER RNA PHE ANTICODON DOMAIN WITH MODIFIED BASES 5-METHYL CYTOSINE AND 1-METHYL GUANINE
Descriptor:DNA (5'-D(*CP*CP*AP*GP*AP*CP*(UMP)P*GP*AP*AP*(MG1)P*AP*(UMP)P*(5CM)P*(UMP)P*GP*G)-3')
Authors:Basti, M.M., Stuart, J.W., Lam, A.T., Guenther, R., Agris, P.F.
Deposit date:1995-08-16
Release date:1995-12-07
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Design, biological activity and NMR-solution structure of a DNA analogue of yeast tRNA(Phe) anticodon domain.
Nat.Struct.Biol., 3, 1996
2JR4
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NMR SOLUTION STRUCTURE OF THE ANTICODON OF E.COLI TRNA-VAL3 WITH NO MODIFICATIONS
Descriptor:5'-R(*CP*CP*UP*CP*CP*CP*UP*UP*AP*CP*AP*AP*GP*GP*AP*GP*G)-3'
Authors:Vendeix, F.A.P., Dziergowska, A., Gustilo, E.M., Graham, W.D., Sproat, B., Malkiewicz, A., Agris, P.F.
Deposit date:2007-06-20
Release date:2007-07-24
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Anticodon domain modifications contribute order to tRNA for ribosome-mediated codon binding.
Biochemistry, 47, 2008
2JRG
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NMR SOLUTION STRUCTURE OF THE ANTICODON OF E. COLI TRNA-VAL3 WITH 2 MODIFICATIONS (CMO5U34 M6A37)
Descriptor:5'-R(*CP*CP*UP*CP*CP*CP*UP*(CM0)P*AP*CP*(6MZ)P*AP*GP*GP*AP*GP*G)-3'
Authors:Vendeix, F.A., Dziergowska, A., Gustilo, E.M., Graham, W.D., Sproat, B., Malkiewicz, A., Agris, P.F.
Deposit date:2007-06-26
Release date:2007-07-24
Last modified:2012-02-01
Method:SOLUTION NMR
Cite:Anticodon domain modifications contribute order to tRNA for ribosome-mediated codon binding.
Biochemistry, 47, 2008
2JRQ
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NMR SOLUTION STRUCTURE OF THE ANTICODON OF E. COLI TRNA-VAL3 WITH 1 MODIFICATION (CMO5U34)
Descriptor:5'-R(*CP*CP*UP*CP*CP*CP*UP*(CM0)P*AP*CP*AP*AP*GP*GP*AP*GP*G)-3'
Authors:Vendeix, F.A.P., Dziergowska, A., Gustilo, E.M., Graham, W.D., Sproat, B., Malkiewicz, A., Agris, P.F.
Deposit date:2007-06-28
Release date:2007-07-24
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Wobble-Position Modifications Pre-structure tRNA's Anticodon for Ribosome-Mediated Codon Binding
To be Published
2JSG
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NMR SOLUTION STRUCTURE OF THE ANTICODON OF E.COLI TRNA-VAL3 WITH 1 MODIFICATION (M6A37)
Descriptor:5'-R(*CP*CP*UP*CP*CP*CP*UP*UP*AP*CP*(6MZ)P*AP*GP*GP*AP*GP*G)-3'
Authors:Vendeix, F.A.P., Dziergowska, A., Gustilo, E.M., Graham, W.D., Sproat, B., Malkiewicz, A., Agris, P.F.
Deposit date:2007-07-04
Release date:2007-08-07
Last modified:2012-02-01
Method:SOLUTION NMR
Cite:Wobble-Position Modifications Pre-structure tRNA's Anticodon for Ribosome-Mediated Codon Binding
To be Published
2KRP
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SOLUTION STRUCTURE OF THE E. COLI TRNA-ARG2(ACG) ANTICODON STEM AND LOOP
Descriptor:RNA (5'-R(*CP*UP*CP*GP*GP*CP*UP*AP*CP*GP*AP*AP*CP*CP*GP*AP*G)-3')
Authors:Bilbille, Y., Agris, P.F.
Deposit date:2009-12-22
Release date:2010-12-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the tRNA-Arg2 ASL containing the ACG anticodon
To be Published
2KRQ
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SOLUTION STRUCTURE OF THE TRNA-ARG2 (ICG) ASL.
Descriptor:RNA (5'-R(*CP*UP*CP*GP*GP*CP*UP*IP*CP*GP*AP*AP*CP*CP*GP*AP*G)-3')
Authors:Bilbille, Y., Agris, P.F.
Deposit date:2009-12-22
Release date:2010-12-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the tRNA-Arg2 (ICG) ASL
To be Published
2KRV
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SOLUTION STRUCTURE OF THE E. COLI TRNA-ARG1 (ICG) ASL CONTAINING THE 2-THIOCYTIDINE MODIFICATION
Descriptor:RNA (5'-R(*CP*UP*CP*GP*GP*(RSP)P*UP*IP*CP*GP*AP*AP*CP*CP*GP*AP*G)-3')
Authors:Bilbille, Y., Agris, P.F.
Deposit date:2009-12-22
Release date:2010-12-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the tRNA-Arg-1 (ICG) ASL containg the 2-thiocytidine modification in position 32.
To be Published
2KRW
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SOLUTION STRUCTURE OF THE E COLI TRNA-ARG1 (ACG) CONTAINING THE 2-THIOCYTIDINE MODIFICATION IN POSITION 32
Descriptor:RNA (5'-R(*CP*UP*CP*GP*GP*(N)P*UP*AP*CP*GP*AP*AP*CP*CP*GP*AP*G)-3')
Authors:Bilbille, Y., Agris, P.F.
Deposit date:2009-12-22
Release date:2010-12-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the tRNA-Arg1 (ACG) containing the 2-thiocytidine modification in position 32
To be Published
2KRY
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SOLUTION STRUCTURE OF THE HUMAN MITOCHONDRIAL TRNAMET ASL CONTAINING THE 5-FORMYLCYTIDINE MODIFICATION IN POSITION 34
Descriptor:RNA (5'-R(*(PSU)P*CP*GP*GP*GP*CP*CP*(RSQ)P*AP*UP*AP*CP*CP*CP*CP*GP*A)-3')
Authors:Bilbille, Y., Agris, P.F.
Deposit date:2009-12-23
Release date:2010-08-18
Last modified:2016-02-17
Method:SOLUTION NMR
Cite:The Human Mitochondrial tRNAMet ASL structure solved by Nuclear Magnetic Resonance
To be Published
2KRZ
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SOLUTION STRUCTURE OF THE HUMAN MITOCHONDRIAL TRNAMET
Descriptor:RNA (5'-R(*(PSU)P*CP*GP*GP*GP*CP*CP*CP*AP*UP*AP*CP*CP*CP*CP*GP*A)-3')
Authors:Bilbille, Y., Agris, P.F.
Deposit date:2009-12-23
Release date:2010-08-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The Human Mitochondrial tRNAMet ASL structure solved by Nuclear Magnetic Resonance
To be Published
2L9E
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SOLUTION STRUCTURE OF THE HUMAN ANTI-CODON STEM AND LOOP(HASL) OF TRANSFER RNA LYSINE 3 (TRNALYS3)
Descriptor:RNA (5'-R(*GP*CP*AP*GP*AP*CP*UP*(70U)P*UP*UP*(12A)P*AP*UP*CP*UP*GP*C)-3')
Authors:Vendeix, F.A.P., Murphy IV, F.V., Cantara, W., Leszczynska, G., Gustilo, E.M., Sproat, B., Malkiewicz, A.A.P., Agris, P.F.
Deposit date:2011-02-08
Release date:2011-03-02
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of the human Anti-codon Stem and loop(hASL) of transfer RNA Lysine 3 (tRNALys3)
To be Published
2MX1
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STRUCTURE OF THE E. COLI THREONYLCARBAMOYL-AMP SYNTHASE TSAC
Descriptor:Threonylcarbamoyl-AMP synthase
Authors:Harris, K.A., Bobay, B.G., Sarachan, K.L., Sims, A.F., Bilbille, Y., Deutsch, C., Iwata-Reuyl, D., Agris, P.F.
Deposit date:2014-12-06
Release date:2015-06-17
Last modified:2015-09-02
Method:SOLUTION NMR
Cite:NMR-based Structural Analysis of Threonylcarbamoyl-AMP Synthase and Its Substrate Interactions.
J.Biol.Chem., 290, 2015
2UU9
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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE-ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUG-CODON IN THE A-SITE AND PAROMOMYCIN.
Descriptor:16S RRNA, 30S RIBOSOMAL PROTEIN S2, 30S RIBOSOMAL PROTEIN S3, ...
Authors:Weixlbaumer, A., Murphy, F.V., Dziergowska, A., Malkiewicz, A., Vendeix, F.A.P., Agris, P.F., Ramakrishnan, V.
Deposit date:2007-03-01
Release date:2007-05-15
Last modified:2019-02-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines.
Nat. Struct. Mol. Biol., 14, 2007
2UUA
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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE-ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUC-CODON IN THE A-SITE AND PAROMOMYCIN.
Descriptor:16S RRNA, 30S RIBOSOMAL PROTEIN S2, 30S RIBOSOMAL PROTEIN S3, ...
Authors:Weixlbaumer, A., Murphy, F.V., Dziergowska, A., Malkiewicz, A., Vendeix, F.A.P., Agris, P.F., Ramakrishnan, V.
Deposit date:2007-03-01
Release date:2007-05-15
Last modified:2019-02-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines.
Nat. Struct. Mol. Biol., 14, 2007
2UUB
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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE-ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUU-CODON IN THE A-SITE AND PAROMOMYCIN.
Descriptor:16S Ribosomal RNA, 30S RIBOSOMAL PROTEIN S2, 30S RIBOSOMAL PROTEIN S3, ...
Authors:Weixlbaumer, A., Murphy, F.V., Dziergowska, A., Malkiewicz, A., Vendeix, F.A.P., Agris, P.F., Ramakrishnan, V.
Deposit date:2007-03-01
Release date:2007-05-15
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Mechanism for Expanding the Decoding Capacity of Transfer Rnas by Modification of Uridines
Nat.Struct.Mol.Biol., 14, 2007
2UUC
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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE-ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUA-CODON IN THE A-SITE AND PAROMOMYCIN.
Descriptor:16S Ribosomal RNA, 30S RIBOSOMAL PROTEIN S2, 30S RIBOSOMAL PROTEIN S3, ...
Authors:Weixlbaumer, A., Murphy, F.V., Dziergowska, A., Malkiewicz, A., Vendeix, F.A.P., Agris, P.F., Ramakrishnan, V.
Deposit date:2007-03-01
Release date:2007-05-22
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines.
Nat. Struct. Mol. Biol., 14, 2007
3T1H
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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A HUMAN ANTI-CODON STEM LOOP (HASL) OF TRANSFER RNA LYSINE 3 (TRNALYS3) BOUND TO AN MRNA WITH AN AAA-CODON IN THE A-SITE AND PAROMOMYCIN
Descriptor:16s rRNA, 30S ribosomal protein S2, 30S ribosomal protein S3, ...
Authors:Murphy, F.V., Vendeix, F.A.P., Cantara, W., Leszczynska, G., Gustilo, E.M., Sproat, B., Malkiewicz, A.A.P., Agris, P.F.
Deposit date:2011-07-21
Release date:2012-01-25
Last modified:2012-03-07
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Human tRNA(Lys3)(UUU) Is Pre-Structured by Natural Modifications for Cognate and Wobble Codon Binding through Keto-Enol Tautomerism.
J.Mol.Biol., 416, 2012
3T1Y
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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A HUMAN ANTI-CODON STEM LOOP (HASL) OF TRANSFER RNA LYSINE 3 (TRNALYS3) BOUND TO AN MRNA WITH AN AAG-CODON IN THE A-SITE AND PAROMOMYCIN
Descriptor:16S rRNA, 30S ribosomal protein S2, 30S ribosomal protein S3, ...
Authors:Murphy, F.V., Vendeix, F.A.P., Cantara, W., Leszczynska, G., Gustilo, E.M., Sproat, B., Malkiewicz, A.A.P., Agris, P.F.
Deposit date:2011-07-22
Release date:2012-01-25
Last modified:2012-09-12
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Human tRNA(Lys3)(UUU) Is Pre-Structured by Natural Modifications for Cognate and Wobble Codon Binding through Keto-Enol Tautomerism.
J.Mol.Biol., 416, 2012
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